Wall clock time and date at job start Mon Mar 30 2020 03:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47408 * 2 1 4 4 H 1.08993 * 109.47500 * 174.24962 * 3 2 1 5 5 C 1.50702 * 109.47161 * 54.24748 * 3 2 1 6 6 H 1.07999 * 120.00137 * 240.00249 * 5 3 2 7 7 C 1.37878 * 119.99608 * 60.00106 * 5 3 2 8 8 N 1.31512 * 120.00427 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99678 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47010 * 90.00267 * 9 7 5 11 11 H 1.48506 * 109.46745 * 210.00010 * 9 7 5 12 12 H 1.48502 * 109.47149 * 329.99878 * 9 7 5 13 13 N 1.46900 * 109.47040 * 294.25139 * 3 2 1 14 14 C 1.46901 * 111.00030 * 274.73642 * 13 3 2 15 15 H 1.08995 * 109.47106 * 35.29974 * 14 13 3 16 16 C 1.53006 * 109.46911 * 275.30222 * 14 13 3 17 17 C 1.53005 * 109.47147 * 299.99821 * 16 14 13 18 18 C 1.53001 * 109.47131 * 300.00267 * 17 16 14 19 19 C 1.53001 * 109.47002 * 59.99786 * 18 17 16 20 20 H 1.08997 * 109.47391 * 60.00230 * 19 18 17 21 21 C 1.53003 * 109.46842 * 180.02562 * 19 18 17 22 22 N 1.46903 * 109.46983 * 294.99958 * 21 19 18 23 23 C 1.52992 * 109.47250 * 155.30518 * 14 13 3 24 24 H 1.09000 * 109.47349 * 178.75106 * 1 2 3 25 25 H 1.08996 * 109.47452 * 298.75032 * 1 2 3 26 26 H 1.09002 * 109.47334 * 58.75403 * 1 2 3 27 27 H 1.08999 * 109.47486 * 240.00024 * 2 1 3 28 28 H 1.08999 * 109.47316 * 119.99812 * 2 1 3 29 29 H 0.96997 * 120.00321 * 179.97438 * 8 7 5 30 30 H 1.00899 * 111.00094 * 38.68936 * 13 3 2 31 31 H 1.08997 * 109.47276 * 179.97438 * 16 14 13 32 32 H 1.08996 * 109.47226 * 59.99940 * 16 14 13 33 33 H 1.08999 * 109.47089 * 180.02562 * 17 16 14 34 34 H 1.08997 * 109.46996 * 59.99873 * 17 16 14 35 35 H 1.09006 * 109.46748 * 300.00284 * 18 17 16 36 36 H 1.08995 * 109.47209 * 179.97438 * 18 17 16 37 37 H 1.09000 * 109.47310 * 174.99960 * 21 19 18 38 38 H 1.08996 * 109.47490 * 55.00190 * 21 19 18 39 39 H 1.00904 * 110.99974 * 180.02562 * 22 21 19 40 40 H 1.00904 * 110.99874 * 303.95483 * 22 21 19 41 41 H 1.09007 * 109.46631 * 299.99567 * 23 14 13 42 42 H 1.09008 * 109.47366 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1250 1.4442 0.1030 5 6 1.4248 2.1928 1.1531 6 1 0.8174 3.0661 0.9665 7 6 1.6373 1.7643 2.4462 8 7 2.3765 0.7006 2.6734 9 14 0.8742 2.6940 3.8755 10 1 -0.4670 2.1302 4.1730 11 1 1.7433 2.5620 5.0724 12 1 0.7397 4.1289 3.5173 13 7 1.6669 2.0937 -1.2628 14 6 2.6578 1.8162 -2.3111 15 1 3.0437 0.8044 -2.1876 16 6 3.8093 2.8179 -2.2025 17 6 3.2676 4.2384 -2.3758 18 6 2.6067 4.3680 -3.7496 19 6 1.4553 3.3663 -3.8582 20 1 0.7200 3.5722 -3.0803 21 6 0.7947 3.4956 -5.2322 22 7 0.1704 4.8198 -5.3527 23 6 1.9969 1.9460 -3.6848 24 1 -0.3634 -1.0274 -0.0224 25 1 -0.3634 0.4943 0.9009 26 1 -0.3634 0.5331 -0.8786 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.5263 0.3994 3.5832 30 1 0.7429 1.8130 -1.5552 31 1 4.5448 2.6118 -2.9800 32 1 4.2801 2.7256 -1.2238 33 1 4.0880 4.9519 -2.2989 34 1 2.5323 4.4442 -1.5980 35 1 3.3420 4.1620 -4.5275 36 1 2.2204 5.3798 -3.8729 37 1 0.0334 2.7235 -5.3434 38 1 1.5486 3.3771 -6.0104 39 1 -0.2735 4.9299 -6.2522 40 1 -0.4866 4.9794 -4.6037 41 1 1.1766 1.2323 -3.7622 42 1 2.7321 1.7396 -4.4627 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724119526.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:44 Heat of formation + Delta-G solvation = -29.096997 kcal Electronic energy + Delta-G solvation = -18585.926628 eV Core-core repulsion = 15985.276724 eV Total energy + Delta-G solvation = -2600.649904 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.90198 -35.98609 -34.16033 -32.02529 -30.57469 -30.15362 -28.02455 -25.75355 -24.34419 -23.19924 -21.82111 -20.58866 -19.59836 -18.19350 -16.15242 -15.98235 -14.83809 -14.71312 -14.55229 -14.42693 -13.99185 -13.51681 -13.30578 -12.81323 -12.47357 -12.05407 -11.94101 -11.74352 -11.48735 -11.40388 -11.20125 -10.89035 -10.60809 -10.52513 -10.45950 -10.13875 -9.97800 -9.75414 -9.63662 -9.48986 -9.36405 -8.87422 -8.64186 -8.29387 -7.07811 -5.92702 -3.93519 3.34398 3.41542 3.45922 4.48149 4.58323 5.00345 5.15415 5.21587 5.39206 5.45200 5.55954 5.73719 5.77248 5.88654 5.96582 6.04835 6.06642 6.11762 6.27183 6.37669 6.39547 6.44568 6.48909 6.60972 6.70647 6.79124 6.82881 6.92202 6.95198 7.11955 7.17533 7.34767 7.38261 7.42189 7.54908 7.76032 7.96015 8.37070 8.65517 8.72393 9.12676 9.70085 11.14421 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027519 B = 0.006528 C = 0.006350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.236450 B = 4288.283484 C = 4408.609947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.145 4.145 3 C 0.216 3.784 4 H 0.033 0.967 5 C -0.484 4.484 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.673 5.673 14 C 0.088 3.912 15 H 0.031 0.969 16 C -0.102 4.102 17 C -0.110 4.110 18 C -0.096 4.096 19 C -0.077 4.077 20 H 0.081 0.919 21 C 0.064 3.936 22 N -0.849 5.849 23 C -0.112 4.112 24 H 0.020 0.980 25 H 0.065 0.935 26 H 0.028 0.972 27 H 0.009 0.991 28 H 0.090 0.910 29 H 0.258 0.742 30 H 0.323 0.677 31 H 0.044 0.956 32 H 0.061 0.939 33 H 0.043 0.957 34 H 0.082 0.918 35 H 0.044 0.956 36 H 0.063 0.937 37 H 0.020 0.980 38 H 0.065 0.935 39 H 0.334 0.666 40 H 0.341 0.659 41 H 0.052 0.948 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.958 3.055 -13.001 13.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.185 4.185 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.523 4.523 6 H 0.078 0.922 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.304 5.304 14 C -0.023 4.023 15 H 0.049 0.951 16 C -0.140 4.140 17 C -0.148 4.148 18 C -0.134 4.134 19 C -0.096 4.096 20 H 0.099 0.901 21 C -0.067 4.067 22 N -0.378 5.378 23 C -0.150 4.150 24 H 0.039 0.961 25 H 0.084 0.916 26 H 0.047 0.953 27 H 0.027 0.973 28 H 0.109 0.891 29 H 0.068 0.932 30 H 0.142 0.858 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.101 0.899 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.039 0.961 38 H 0.083 0.917 39 H 0.146 0.854 40 H 0.153 0.847 41 H 0.071 0.929 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.857 3.842 -12.591 13.192 hybrid contribution -1.455 -1.241 0.546 1.989 sum -2.312 2.602 -12.045 12.538 Atomic orbital electron populations 1.21550 0.97807 0.97838 1.01149 1.22106 0.94892 1.01461 1.00018 1.19209 0.95955 0.88330 0.85738 0.94945 1.21070 1.30129 1.11326 0.89743 0.92153 1.24904 0.95645 0.95189 0.98663 1.69883 1.39390 1.24212 1.20244 0.86622 0.78934 0.80409 0.82171 1.20986 1.21515 1.19957 1.60869 1.03286 1.62920 1.03369 1.21369 0.94031 0.96224 0.90676 0.95074 1.21458 0.96404 0.95438 1.00699 1.21399 0.99909 0.95799 0.97691 1.21380 0.96244 0.98887 0.96839 1.21050 0.98174 0.94962 0.95437 0.90071 1.21914 0.97379 0.88736 0.98674 1.58713 1.40257 1.31395 1.07439 1.21712 0.99532 0.96314 0.97450 0.96099 0.91580 0.95268 0.97262 0.89120 0.93247 0.85827 0.93700 0.91992 0.93842 0.89937 0.93701 0.91791 0.96142 0.91679 0.85415 0.84660 0.92943 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.39 37.15 0.35 -2.33 16 2 C -0.15 -3.39 5.48 -26.74 -0.15 -3.53 16 3 C 0.22 5.21 2.14 -68.86 -0.15 5.07 16 4 H 0.03 0.88 7.09 -51.93 -0.37 0.52 16 5 C -0.48 -12.90 7.35 -34.44 -0.25 -13.15 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.53 5.23 -17.82 -0.09 1.43 16 8 N -0.90 -25.33 11.38 55.43 0.63 -24.70 16 9 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.67 -13.56 4.55 -100.96 -0.46 -14.02 16 14 C 0.09 1.54 2.62 -67.71 -0.18 1.37 16 15 H 0.03 0.60 7.12 -51.93 -0.37 0.23 16 16 C -0.10 -1.75 5.51 -26.73 -0.15 -1.90 16 17 C -0.11 -1.80 5.77 -26.73 -0.15 -1.95 16 18 C -0.10 -1.36 5.09 -26.73 -0.14 -1.50 16 19 C -0.08 -1.06 2.17 -90.62 -0.20 -1.25 16 20 H 0.08 1.26 7.49 -51.93 -0.39 0.87 16 21 C 0.06 0.73 6.17 -3.82 -0.02 0.71 16 22 N -0.85 -8.95 9.08 -10.37 -0.09 -9.04 16 23 C -0.11 -1.61 4.58 -26.74 -0.12 -1.73 16 24 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 1.55 7.05 -51.93 -0.37 1.18 16 26 H 0.03 0.56 6.42 -51.93 -0.33 0.22 16 27 H 0.01 0.19 7.39 -51.93 -0.38 -0.19 16 28 H 0.09 2.39 6.24 -51.93 -0.32 2.07 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.32 6.34 6.06 -39.29 -0.24 6.10 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 1.21 7.41 -51.93 -0.38 0.82 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 1.55 7.60 -51.93 -0.39 1.16 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.92 7.75 -51.93 -0.40 0.52 16 37 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.33 2.84 9.08 -39.29 -0.36 2.48 16 40 H 0.34 3.47 8.99 -39.29 -0.35 3.12 16 41 H 0.05 0.74 8.12 -51.92 -0.42 0.32 16 42 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 LS Contribution 314.31 15.07 4.74 4.74 Total: -1.00 -27.03 314.31 -9.05 -36.08 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -7.59 Total: 9.36 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -1.25 Total: -18.78 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: 0.08 Total: -47.76 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.03 -9.05 -36.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724119526.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.983 kcal (2) G-P(sol) polarization free energy of solvation -27.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds