Wall clock time and date at job start Mon Mar 30 2020 03:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47408 * 2 1 4 4 H 1.08993 * 109.47500 * 174.24962 * 3 2 1 5 5 C 1.50702 * 109.47161 * 54.24748 * 3 2 1 6 6 H 1.07999 * 120.00137 * 240.00249 * 5 3 2 7 7 C 1.37878 * 119.99608 * 60.00106 * 5 3 2 8 8 N 1.31512 * 120.00427 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99678 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47010 * 90.00267 * 9 7 5 11 11 H 1.48506 * 109.46745 * 210.00010 * 9 7 5 12 12 H 1.48502 * 109.47149 * 329.99878 * 9 7 5 13 13 N 1.46900 * 109.47040 * 294.25139 * 3 2 1 14 14 C 1.46901 * 111.00030 * 274.73642 * 13 3 2 15 15 H 1.08995 * 109.47106 * 35.29974 * 14 13 3 16 16 C 1.53006 * 109.46911 * 275.30222 * 14 13 3 17 17 C 1.53005 * 109.47147 * 299.99821 * 16 14 13 18 18 C 1.53001 * 109.47131 * 300.00267 * 17 16 14 19 19 C 1.53001 * 109.47002 * 59.99786 * 18 17 16 20 20 H 1.08997 * 109.47391 * 60.00230 * 19 18 17 21 21 C 1.53003 * 109.46842 * 180.02562 * 19 18 17 22 22 N 1.46903 * 109.46983 * 294.99958 * 21 19 18 23 23 C 1.52992 * 109.47250 * 155.30518 * 14 13 3 24 24 H 1.09000 * 109.47349 * 178.75106 * 1 2 3 25 25 H 1.08996 * 109.47452 * 298.75032 * 1 2 3 26 26 H 1.09002 * 109.47334 * 58.75403 * 1 2 3 27 27 H 1.08999 * 109.47486 * 240.00024 * 2 1 3 28 28 H 1.08999 * 109.47316 * 119.99812 * 2 1 3 29 29 H 0.96997 * 120.00321 * 179.97438 * 8 7 5 30 30 H 1.00899 * 111.00094 * 38.68936 * 13 3 2 31 31 H 1.08997 * 109.47276 * 179.97438 * 16 14 13 32 32 H 1.08996 * 109.47226 * 59.99940 * 16 14 13 33 33 H 1.08999 * 109.47089 * 180.02562 * 17 16 14 34 34 H 1.08997 * 109.46996 * 59.99873 * 17 16 14 35 35 H 1.09006 * 109.46748 * 300.00284 * 18 17 16 36 36 H 1.08995 * 109.47209 * 179.97438 * 18 17 16 37 37 H 1.09000 * 109.47310 * 174.99960 * 21 19 18 38 38 H 1.08996 * 109.47490 * 55.00190 * 21 19 18 39 39 H 1.00904 * 110.99974 * 180.02562 * 22 21 19 40 40 H 1.00904 * 110.99874 * 303.95483 * 22 21 19 41 41 H 1.09007 * 109.46631 * 299.99567 * 23 14 13 42 42 H 1.09008 * 109.47366 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1250 1.4442 0.1030 5 6 1.4248 2.1928 1.1531 6 1 0.8174 3.0661 0.9665 7 6 1.6373 1.7643 2.4462 8 7 2.3765 0.7006 2.6734 9 14 0.8742 2.6940 3.8755 10 1 -0.4670 2.1302 4.1730 11 1 1.7433 2.5620 5.0724 12 1 0.7397 4.1289 3.5173 13 7 1.6669 2.0937 -1.2628 14 6 2.6578 1.8162 -2.3111 15 1 3.0437 0.8044 -2.1876 16 6 3.8093 2.8179 -2.2025 17 6 3.2676 4.2384 -2.3758 18 6 2.6067 4.3680 -3.7496 19 6 1.4553 3.3663 -3.8582 20 1 0.7200 3.5722 -3.0803 21 6 0.7947 3.4956 -5.2322 22 7 0.1704 4.8198 -5.3527 23 6 1.9969 1.9460 -3.6848 24 1 -0.3634 -1.0274 -0.0224 25 1 -0.3634 0.4943 0.9009 26 1 -0.3634 0.5331 -0.8786 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.5263 0.3994 3.5832 30 1 0.7429 1.8130 -1.5552 31 1 4.5448 2.6118 -2.9800 32 1 4.2801 2.7256 -1.2238 33 1 4.0880 4.9519 -2.2989 34 1 2.5323 4.4442 -1.5980 35 1 3.3420 4.1620 -4.5275 36 1 2.2204 5.3798 -3.8729 37 1 0.0334 2.7235 -5.3434 38 1 1.5486 3.3771 -6.0104 39 1 -0.2735 4.9299 -6.2522 40 1 -0.4866 4.9794 -4.6037 41 1 1.1766 1.2323 -3.7622 42 1 2.7321 1.7396 -4.4627 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724119526.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:43 Heat of formation + Delta-G solvation = -46.252845 kcal Electronic energy + Delta-G solvation = -18586.670561 eV Core-core repulsion = 15985.276724 eV Total energy + Delta-G solvation = -2601.393837 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.24742 -37.58479 -35.41001 -33.85940 -32.20739 -31.32181 -29.59804 -27.65784 -25.53266 -24.97763 -23.12749 -21.87443 -21.22461 -19.68261 -18.13286 -17.06736 -16.74247 -16.24251 -15.68862 -15.53432 -15.41055 -14.93950 -14.79942 -14.43795 -14.20882 -13.83204 -13.21534 -13.07278 -12.95761 -12.78727 -12.60834 -12.57143 -12.42850 -12.37446 -11.91962 -11.70362 -11.59919 -11.42814 -11.20962 -10.97188 -10.78216 -10.74821 -10.39466 -9.45955 -8.77206 -8.02506 -6.09889 1.41921 1.43903 1.53477 2.46973 3.26505 3.63489 3.79035 3.91734 4.00657 4.19458 4.44143 4.53164 4.54317 4.57651 4.60336 4.67181 4.76600 4.81654 4.84654 4.90518 4.95197 5.00469 5.09643 5.13860 5.22100 5.40122 5.45926 5.49136 5.53991 5.57910 5.64981 5.70403 5.77401 5.82645 5.92725 6.33449 6.38529 6.70156 6.78581 6.97195 7.07348 7.58130 9.02919 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027519 B = 0.006528 C = 0.006350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.236450 B = 4288.283484 C = 4408.609947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.139 4.139 3 C 0.224 3.776 4 H -0.007 1.007 5 C -0.492 4.492 6 H 0.051 0.949 7 C 0.012 3.988 8 N -0.923 5.923 9 Si 0.947 3.053 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.273 1.273 13 N -0.669 5.669 14 C 0.085 3.915 15 H 0.015 0.985 16 C -0.100 4.100 17 C -0.106 4.106 18 C -0.087 4.087 19 C -0.073 4.073 20 H 0.061 0.939 21 C 0.071 3.929 22 N -0.855 5.855 23 C -0.103 4.103 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.050 0.950 27 H 0.022 0.978 28 H 0.057 0.943 29 H 0.257 0.743 30 H 0.328 0.672 31 H 0.068 0.932 32 H 0.026 0.974 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.028 0.972 38 H 0.073 0.927 39 H 0.348 0.652 40 H 0.343 0.657 41 H 0.060 0.940 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.913 3.512 -14.921 15.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.178 4.178 3 C 0.116 3.884 4 H 0.011 0.989 5 C -0.531 4.531 6 H 0.069 0.931 7 C -0.185 4.185 8 N -0.564 5.564 9 Si 0.774 3.226 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.197 1.197 13 N -0.301 5.301 14 C -0.025 4.025 15 H 0.033 0.967 16 C -0.138 4.138 17 C -0.143 4.143 18 C -0.124 4.124 19 C -0.092 4.092 20 H 0.080 0.920 21 C -0.060 4.060 22 N -0.386 5.386 23 C -0.141 4.141 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.040 0.960 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.147 0.853 31 H 0.087 0.913 32 H 0.045 0.955 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.046 0.954 38 H 0.091 0.909 39 H 0.161 0.839 40 H 0.155 0.845 41 H 0.078 0.922 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.825 4.309 -14.533 15.267 hybrid contribution -1.104 -1.369 1.119 2.085 sum -2.930 2.939 -13.413 14.041 Atomic orbital electron populations 1.21424 0.95905 0.99170 1.00853 1.21955 0.96495 1.00402 0.98986 1.18904 0.93333 0.89082 0.87124 0.98874 1.21287 1.29818 1.11094 0.90875 0.93065 1.25570 0.96115 0.95927 1.00935 1.70019 1.40458 1.25392 1.20508 0.85722 0.78315 0.79272 0.79300 1.20229 1.21489 1.19736 1.60739 1.04130 1.62374 1.02833 1.21453 0.93771 0.95392 0.91909 0.96673 1.21442 0.96696 0.96151 0.99558 1.21325 0.99487 0.95217 0.98312 1.21296 0.96537 0.99167 0.95427 1.20970 0.97571 0.94157 0.96474 0.92040 1.21779 0.97678 0.89469 0.97034 1.58681 1.40706 1.30802 1.08377 1.21640 1.00022 0.97087 0.95367 0.94061 0.94045 0.93159 0.95952 0.92401 0.93416 0.85256 0.91326 0.95492 0.93061 0.93038 0.92313 0.91731 0.95405 0.90889 0.83925 0.84501 0.92174 0.90480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.84 9.39 71.98 0.68 -4.16 16 2 C -0.14 -6.53 5.48 30.59 0.17 -6.37 16 3 C 0.22 11.15 2.14 44.17 0.09 11.25 16 4 H -0.01 -0.38 7.09 -2.39 -0.02 -0.40 16 5 C -0.49 -26.81 7.35 25.60 0.19 -26.62 16 6 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 7 C 0.01 0.67 5.23 84.66 0.44 1.12 16 8 N -0.92 -53.46 11.38 21.45 0.24 -53.22 16 9 Si 0.95 44.36 29.54 68.60 2.03 46.39 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 12 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 13 N -0.67 -27.11 4.55 -473.33 -2.15 -29.27 16 14 C 0.09 2.95 2.62 44.91 0.12 3.07 16 15 H 0.02 0.58 7.12 -2.39 -0.02 0.56 16 16 C -0.10 -3.44 5.51 30.60 0.17 -3.27 16 17 C -0.11 -3.39 5.77 30.60 0.18 -3.21 16 18 C -0.09 -2.28 5.09 30.59 0.16 -2.12 16 19 C -0.07 -1.82 2.17 -10.79 -0.02 -1.84 16 20 H 0.06 1.81 7.49 -2.39 -0.02 1.79 16 21 C 0.07 1.41 6.17 86.30 0.53 1.94 16 22 N -0.86 -15.64 9.08 -186.71 -1.69 -17.33 16 23 C -0.10 -2.71 4.58 30.59 0.14 -2.57 16 24 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.04 1.92 7.05 -2.39 -0.02 1.90 16 26 H 0.05 1.85 6.42 -2.39 -0.02 1.84 16 27 H 0.02 0.96 7.39 -2.39 -0.02 0.94 16 28 H 0.06 3.13 6.24 -2.39 -0.01 3.11 16 29 H 0.26 14.32 8.31 -92.71 -0.77 13.54 16 30 H 0.33 12.61 6.06 -89.69 -0.54 12.06 16 31 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.03 1.09 7.41 -2.39 -0.02 1.07 16 33 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.05 1.96 7.60 -2.39 -0.02 1.95 16 35 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.06 1.71 7.75 -2.39 -0.02 1.70 16 37 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.35 4.87 9.08 -89.69 -0.81 4.05 16 40 H 0.34 6.20 8.99 -89.69 -0.81 5.39 16 41 H 0.06 1.52 8.12 -2.38 -0.02 1.50 16 42 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 Total: -1.00 -58.98 314.31 0.10 -58.88 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: -1.16 Total: 27.33 kcal Atomic # 6 Polarization: -35.62 SS G_CDS: 2.84 Total: -32.78 kcal Atomic # 7 Polarization: -96.21 SS G_CDS: -3.60 Total: -99.82 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -58.98 0.10 -58.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724119526.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.629 kcal (2) G-P(sol) polarization free energy of solvation -58.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds