Wall clock time and date at job start Mon Mar 30 2020 03:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47013 * 2 1 4 4 H 1.09003 * 109.47504 * 175.37249 * 3 2 1 5 5 C 1.50707 * 109.47133 * 55.37806 * 3 2 1 6 6 H 1.08003 * 119.99614 * 243.88185 * 5 3 2 7 7 C 1.37873 * 119.99835 * 63.87456 * 5 3 2 8 8 N 1.31513 * 120.00339 * 8.75362 * 7 5 3 9 9 Si 1.86805 * 119.99726 * 188.74455 * 7 5 3 10 10 H 1.48500 * 109.46905 * 60.00795 * 9 7 5 11 11 H 1.48500 * 109.47461 * 300.00607 * 9 7 5 12 12 H 1.48505 * 109.46803 * 180.02562 * 9 7 5 13 13 N 1.46897 * 109.47266 * 295.37836 * 3 2 1 14 14 C 1.46897 * 110.99886 * 273.98697 * 13 3 2 15 15 H 1.09000 * 109.47283 * 35.92369 * 14 13 3 16 16 C 1.53004 * 109.47240 * 275.92316 * 14 13 3 17 17 C 1.53004 * 109.47306 * 180.02562 * 16 14 13 18 18 C 1.52995 * 109.47220 * 59.99716 * 17 16 14 19 19 C 1.53004 * 109.47213 * 300.00341 * 18 17 16 20 20 H 1.09000 * 109.47026 * 299.99684 * 19 18 17 21 21 C 1.53003 * 109.47252 * 180.02562 * 19 18 17 22 22 N 1.46899 * 109.46923 * 64.99695 * 21 19 18 23 23 C 1.52998 * 109.47544 * 59.99880 * 19 18 17 24 24 H 1.09005 * 109.47244 * 185.23679 * 1 2 3 25 25 H 1.08997 * 109.47391 * 305.23921 * 1 2 3 26 26 H 1.08998 * 109.47231 * 65.23670 * 1 2 3 27 27 H 1.08997 * 109.47267 * 240.00529 * 2 1 3 28 28 H 1.08995 * 109.47170 * 119.99814 * 2 1 3 29 29 H 0.97004 * 119.99525 * 3.41946 * 8 7 5 30 30 H 1.00898 * 111.00646 * 37.94091 * 13 3 2 31 31 H 1.09007 * 109.46987 * 299.99544 * 16 14 13 32 32 H 1.08994 * 109.47323 * 59.99725 * 16 14 13 33 33 H 1.08998 * 109.46772 * 299.99558 * 17 16 14 34 34 H 1.09002 * 109.46913 * 179.97438 * 17 16 14 35 35 H 1.09004 * 109.47207 * 180.02562 * 18 17 16 36 36 H 1.08998 * 109.47377 * 60.00212 * 18 17 16 37 37 H 1.09004 * 109.47211 * 184.99722 * 21 19 18 38 38 H 1.08997 * 109.46883 * 304.99999 * 21 19 18 39 39 H 1.00897 * 111.00630 * 56.04998 * 22 21 19 40 40 H 1.00901 * 110.99487 * 179.97438 * 22 21 19 41 41 H 1.08998 * 109.47583 * 180.02562 * 23 19 18 42 42 H 1.09009 * 109.46924 * 59.99805 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1268 1.4437 0.0829 5 6 1.4463 2.1852 1.1693 6 1 0.7849 3.0217 0.9981 7 6 1.7474 1.7967 2.4574 8 7 2.6808 0.8953 2.6712 9 14 0.8295 2.5509 3.8991 10 1 -0.6213 2.2629 3.7674 11 1 1.0437 4.0204 3.9081 12 1 1.3370 1.9693 5.1677 13 7 1.6435 2.1020 -1.2513 14 6 2.6241 1.8462 -2.3148 15 1 3.0146 0.8337 -2.2130 16 6 3.7733 2.8499 -2.2012 17 6 4.7942 2.5838 -3.3093 18 6 4.1178 2.7352 -4.6732 19 6 2.9686 1.7315 -4.7867 20 1 3.3592 0.7189 -4.6854 21 6 2.2924 1.8824 -6.1509 22 7 3.2394 1.5106 -7.2106 23 6 1.9476 1.9975 -3.6788 24 1 -0.3634 -1.0234 0.0938 25 1 -0.3634 0.5929 0.8393 26 1 -0.3633 0.4304 -0.9331 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.1917 0.5402 1.9270 30 1 0.7191 1.8139 -1.5349 31 1 3.3827 3.8625 -2.3031 32 1 4.2549 2.7424 -1.2294 33 1 5.1849 1.5713 -3.2078 34 1 5.6127 3.2992 -3.2286 35 1 4.8450 2.5452 -5.4626 36 1 3.7271 3.7477 -4.7746 37 1 1.4200 1.2307 -6.1982 38 1 1.9806 2.9176 -6.2893 39 1 3.5930 0.5763 -7.0681 40 1 2.8161 1.6015 -8.1220 41 1 1.1291 1.2822 -3.7594 42 1 1.5569 3.0102 -3.7802 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724119527.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:47 Heat of formation + Delta-G solvation = -35.638452 kcal Electronic energy + Delta-G solvation = -18289.724486 eV Core-core repulsion = 15688.790923 eV Total energy + Delta-G solvation = -2600.933563 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.97272 -36.42624 -34.41788 -32.35042 -30.77548 -30.37397 -27.92297 -25.32216 -24.42530 -23.47960 -21.94966 -20.64591 -19.62131 -19.08545 -16.67115 -16.05839 -15.10284 -14.78127 -14.57427 -14.34750 -13.84914 -13.72672 -13.56953 -13.09922 -12.91142 -12.42159 -12.11906 -11.70886 -11.66385 -11.47707 -11.08354 -10.95290 -10.74347 -10.73313 -10.37435 -10.22966 -10.09030 -10.03512 -9.90873 -9.86331 -9.55718 -8.83348 -8.58235 -8.18407 -7.23480 -6.25466 -3.92698 3.48803 3.49876 3.68576 4.36627 4.58479 4.74075 4.92691 4.99703 5.30220 5.42906 5.44034 5.46235 5.55865 5.72219 5.77290 5.84215 5.88955 5.94720 5.97841 6.13700 6.17690 6.20806 6.34943 6.38550 6.47456 6.50953 6.57808 6.69423 6.75497 6.87010 6.94092 7.05984 7.13886 7.23213 7.30682 7.35376 8.03676 8.35186 8.54671 8.72242 8.98962 9.74659 11.10450 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.038959 B = 0.005497 C = 0.005192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.529482 B = 5092.284265 C = 5391.323733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.150 4.150 3 C 0.205 3.795 4 H 0.024 0.976 5 C -0.569 4.569 6 H 0.054 0.946 7 C 0.018 3.982 8 N -0.916 5.916 9 Si 1.063 2.937 10 H -0.289 1.289 11 H -0.289 1.289 12 H -0.285 1.285 13 N -0.675 5.675 14 C 0.090 3.910 15 H 0.029 0.971 16 C -0.104 4.104 17 C -0.121 4.121 18 C -0.101 4.101 19 C -0.081 4.081 20 H 0.063 0.937 21 C 0.065 3.935 22 N -0.850 5.850 23 C -0.112 4.112 24 H 0.026 0.974 25 H 0.073 0.927 26 H 0.032 0.968 27 H 0.018 0.982 28 H 0.066 0.934 29 H 0.267 0.733 30 H 0.326 0.674 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.024 0.976 38 H 0.071 0.929 39 H 0.338 0.662 40 H 0.338 0.662 41 H 0.053 0.947 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.081 0.195 -15.477 15.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.190 4.190 3 C 0.097 3.903 4 H 0.042 0.958 5 C -0.607 4.607 6 H 0.072 0.928 7 C -0.186 4.186 8 N -0.553 5.553 9 Si 0.892 3.108 10 H -0.216 1.216 11 H -0.216 1.216 12 H -0.210 1.210 13 N -0.305 5.305 14 C -0.020 4.020 15 H 0.047 0.953 16 C -0.142 4.142 17 C -0.159 4.159 18 C -0.139 4.139 19 C -0.101 4.101 20 H 0.082 0.918 21 C -0.065 4.065 22 N -0.379 5.379 23 C -0.151 4.151 24 H 0.045 0.955 25 H 0.092 0.908 26 H 0.051 0.949 27 H 0.036 0.964 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.145 0.855 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.042 0.958 38 H 0.090 0.910 39 H 0.151 0.849 40 H 0.149 0.851 41 H 0.071 0.929 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.469 1.378 -13.359 13.438 hybrid contribution -0.761 -1.768 -2.095 2.845 sum -0.292 -0.390 -15.454 15.462 Atomic orbital electron populations 1.21586 0.96830 0.98999 1.01360 1.22198 0.96093 1.01466 0.99245 1.19332 0.95342 0.88232 0.87428 0.95774 1.21833 1.30976 1.16901 0.91038 0.92756 1.25680 0.96827 0.96119 0.99925 1.70805 1.20379 1.28678 1.35429 0.83630 0.75588 0.75663 0.75917 1.21593 1.21572 1.21048 1.60776 1.03588 1.62906 1.03245 1.21391 0.93785 0.96496 0.90332 0.95278 1.21499 0.95180 0.99632 0.97893 1.21584 0.98089 1.01108 0.95106 1.21446 0.97058 0.98538 0.96826 1.21125 0.96170 0.99788 0.93005 0.91816 1.21866 0.92775 1.00531 0.91362 1.58718 1.41206 1.32790 1.05150 1.21718 0.97217 1.01942 0.94210 0.95493 0.90814 0.94936 0.96355 0.91533 0.92146 0.85527 0.91806 0.92005 0.92692 0.92374 0.91459 0.92438 0.95816 0.91042 0.84946 0.85060 0.92863 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.40 37.16 0.35 -2.40 16 2 C -0.15 -3.47 5.46 -26.73 -0.15 -3.61 16 3 C 0.21 5.05 1.76 -68.86 -0.12 4.93 16 4 H 0.02 0.66 6.40 -51.93 -0.33 0.33 16 5 C -0.57 -15.63 7.21 -34.44 -0.25 -15.88 16 6 H 0.05 1.54 7.83 -52.48 -0.41 1.13 16 7 C 0.02 0.50 5.23 -17.82 -0.09 0.41 16 8 N -0.92 -27.16 12.92 55.43 0.72 -26.44 16 9 Si 1.06 25.23 29.91 -169.99 -5.08 20.14 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 N -0.67 -14.27 6.04 -100.95 -0.61 -14.88 16 14 C 0.09 1.62 2.30 -67.71 -0.16 1.46 16 15 H 0.03 0.56 7.17 -51.93 -0.37 0.19 16 16 C -0.10 -1.81 5.40 -26.73 -0.14 -1.95 16 17 C -0.12 -1.71 5.92 -26.73 -0.16 -1.87 16 18 C -0.10 -1.28 5.09 -26.73 -0.14 -1.42 16 19 C -0.08 -1.01 2.33 -90.62 -0.21 -1.22 16 20 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 21 C 0.07 0.68 6.18 -3.82 -0.02 0.66 16 22 N -0.85 -7.73 9.08 -10.37 -0.09 -7.83 16 23 C -0.11 -1.62 4.48 -26.73 -0.12 -1.74 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 1.71 6.89 -51.93 -0.36 1.36 16 26 H 0.03 0.61 6.62 -51.93 -0.34 0.27 16 27 H 0.02 0.38 7.45 -51.93 -0.39 0.00 16 28 H 0.07 1.70 6.37 -51.93 -0.33 1.37 16 29 H 0.27 7.93 6.09 -40.82 -0.25 7.68 16 30 H 0.33 6.61 6.24 -39.29 -0.25 6.36 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.06 1.23 7.37 -51.93 -0.38 0.85 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.83 7.75 -51.93 -0.40 0.42 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.34 2.81 8.99 -39.29 -0.35 2.45 16 40 H 0.34 2.45 9.08 -39.29 -0.36 2.10 16 41 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 42 H 0.07 1.01 8.14 -51.92 -0.42 0.58 16 LS Contribution 315.68 15.07 4.76 4.76 Total: -1.00 -28.87 315.68 -9.07 -37.94 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -7.55 Total: 8.94 kcal Atomic # 6 Polarization: -21.42 SS G_CDS: -1.21 Total: -22.63 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: 0.01 Total: -49.15 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -5.08 Total: 20.14 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.87 -9.07 -37.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724119527.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.300 kcal (2) G-P(sol) polarization free energy of solvation -28.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds