Wall clock time and date at job start Mon Mar 30 2020 03:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47013 * 2 1 4 4 H 1.09003 * 109.47504 * 175.37249 * 3 2 1 5 5 C 1.50707 * 109.47133 * 55.37806 * 3 2 1 6 6 H 1.08003 * 119.99614 * 243.88185 * 5 3 2 7 7 C 1.37873 * 119.99835 * 63.87456 * 5 3 2 8 8 N 1.31513 * 120.00339 * 8.75362 * 7 5 3 9 9 Si 1.86805 * 119.99726 * 188.74455 * 7 5 3 10 10 H 1.48500 * 109.46905 * 60.00795 * 9 7 5 11 11 H 1.48500 * 109.47461 * 300.00607 * 9 7 5 12 12 H 1.48505 * 109.46803 * 180.02562 * 9 7 5 13 13 N 1.46897 * 109.47266 * 295.37836 * 3 2 1 14 14 C 1.46897 * 110.99886 * 273.98697 * 13 3 2 15 15 H 1.09000 * 109.47283 * 35.92369 * 14 13 3 16 16 C 1.53004 * 109.47240 * 275.92316 * 14 13 3 17 17 C 1.53004 * 109.47306 * 180.02562 * 16 14 13 18 18 C 1.52995 * 109.47220 * 59.99716 * 17 16 14 19 19 C 1.53004 * 109.47213 * 300.00341 * 18 17 16 20 20 H 1.09000 * 109.47026 * 299.99684 * 19 18 17 21 21 C 1.53003 * 109.47252 * 180.02562 * 19 18 17 22 22 N 1.46899 * 109.46923 * 64.99695 * 21 19 18 23 23 C 1.52998 * 109.47544 * 59.99880 * 19 18 17 24 24 H 1.09005 * 109.47244 * 185.23679 * 1 2 3 25 25 H 1.08997 * 109.47391 * 305.23921 * 1 2 3 26 26 H 1.08998 * 109.47231 * 65.23670 * 1 2 3 27 27 H 1.08997 * 109.47267 * 240.00529 * 2 1 3 28 28 H 1.08995 * 109.47170 * 119.99814 * 2 1 3 29 29 H 0.97004 * 119.99525 * 3.41946 * 8 7 5 30 30 H 1.00898 * 111.00646 * 37.94091 * 13 3 2 31 31 H 1.09007 * 109.46987 * 299.99544 * 16 14 13 32 32 H 1.08994 * 109.47323 * 59.99725 * 16 14 13 33 33 H 1.08998 * 109.46772 * 299.99558 * 17 16 14 34 34 H 1.09002 * 109.46913 * 179.97438 * 17 16 14 35 35 H 1.09004 * 109.47207 * 180.02562 * 18 17 16 36 36 H 1.08998 * 109.47377 * 60.00212 * 18 17 16 37 37 H 1.09004 * 109.47211 * 184.99722 * 21 19 18 38 38 H 1.08997 * 109.46883 * 304.99999 * 21 19 18 39 39 H 1.00897 * 111.00630 * 56.04998 * 22 21 19 40 40 H 1.00901 * 110.99487 * 179.97438 * 22 21 19 41 41 H 1.08998 * 109.47583 * 180.02562 * 23 19 18 42 42 H 1.09009 * 109.46924 * 59.99805 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1268 1.4437 0.0829 5 6 1.4463 2.1852 1.1693 6 1 0.7849 3.0217 0.9981 7 6 1.7474 1.7967 2.4574 8 7 2.6808 0.8953 2.6712 9 14 0.8295 2.5509 3.8991 10 1 -0.6213 2.2629 3.7674 11 1 1.0437 4.0204 3.9081 12 1 1.3370 1.9693 5.1677 13 7 1.6435 2.1020 -1.2513 14 6 2.6241 1.8462 -2.3148 15 1 3.0146 0.8337 -2.2130 16 6 3.7733 2.8499 -2.2012 17 6 4.7942 2.5838 -3.3093 18 6 4.1178 2.7352 -4.6732 19 6 2.9686 1.7315 -4.7867 20 1 3.3592 0.7189 -4.6854 21 6 2.2924 1.8824 -6.1509 22 7 3.2394 1.5106 -7.2106 23 6 1.9476 1.9975 -3.6788 24 1 -0.3634 -1.0234 0.0938 25 1 -0.3634 0.5929 0.8393 26 1 -0.3633 0.4304 -0.9331 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.1917 0.5402 1.9270 30 1 0.7191 1.8139 -1.5349 31 1 3.3827 3.8625 -2.3031 32 1 4.2549 2.7424 -1.2294 33 1 5.1849 1.5713 -3.2078 34 1 5.6127 3.2992 -3.2286 35 1 4.8450 2.5452 -5.4626 36 1 3.7271 3.7477 -4.7746 37 1 1.4200 1.2307 -6.1982 38 1 1.9806 2.9176 -6.2893 39 1 3.5930 0.5763 -7.0681 40 1 2.8161 1.6015 -8.1220 41 1 1.1291 1.2822 -3.7594 42 1 1.5569 3.0102 -3.7802 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724119527.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:46 Heat of formation + Delta-G solvation = -55.115355 kcal Electronic energy + Delta-G solvation = -18290.569067 eV Core-core repulsion = 15688.790923 eV Total energy + Delta-G solvation = -2601.778145 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.28222 -38.05942 -35.59811 -34.10471 -32.49375 -31.47404 -29.46737 -27.19691 -25.70350 -25.21110 -23.18587 -22.08252 -20.95886 -20.67586 -18.70189 -17.09318 -16.52675 -16.03307 -15.74203 -15.61572 -15.50565 -15.25406 -15.04583 -14.74150 -14.48340 -14.08432 -13.28374 -13.13980 -13.09937 -12.83231 -12.72814 -12.61055 -12.32201 -12.07530 -11.97562 -11.92550 -11.79206 -11.70579 -11.40990 -11.20109 -10.93926 -10.62417 -10.32904 -9.54270 -9.00688 -8.49926 -6.18046 1.55286 1.62298 1.81205 2.60969 3.26188 3.35546 3.67573 3.73285 3.92709 4.14015 4.20568 4.30813 4.34059 4.34605 4.46073 4.50274 4.56042 4.60427 4.66860 4.73808 4.78458 4.89692 4.91761 5.02194 5.10513 5.20100 5.21359 5.28691 5.33269 5.37433 5.42590 5.44806 5.55658 5.57863 6.04754 6.23276 6.25340 6.58454 6.63653 6.82273 6.84651 7.57249 8.85364 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.038959 B = 0.005497 C = 0.005192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.529482 B = 5092.284265 C = 5391.323733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.142 4.142 3 C 0.211 3.789 4 H -0.012 1.012 5 C -0.574 4.574 6 H 0.044 0.956 7 C -0.028 4.028 8 N -0.939 5.939 9 Si 1.106 2.894 10 H -0.270 1.270 11 H -0.277 1.277 12 H -0.288 1.288 13 N -0.680 5.680 14 C 0.090 3.910 15 H 0.014 0.986 16 C -0.100 4.100 17 C -0.114 4.114 18 C -0.093 4.093 19 C -0.076 4.076 20 H 0.061 0.939 21 C 0.073 3.927 22 N -0.854 5.854 23 C -0.102 4.102 24 H 0.048 0.952 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.033 0.967 28 H 0.036 0.964 29 H 0.254 0.746 30 H 0.333 0.667 31 H 0.059 0.941 32 H 0.024 0.976 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.030 0.970 38 H 0.072 0.928 39 H 0.344 0.656 40 H 0.350 0.650 41 H 0.061 0.939 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.149 0.407 -17.374 17.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.182 4.182 3 C 0.102 3.898 4 H 0.006 0.994 5 C -0.612 4.612 6 H 0.062 0.938 7 C -0.226 4.226 8 N -0.577 5.577 9 Si 0.930 3.070 10 H -0.195 1.195 11 H -0.203 1.203 12 H -0.214 1.214 13 N -0.311 5.311 14 C -0.020 4.020 15 H 0.032 0.968 16 C -0.139 4.139 17 C -0.152 4.152 18 C -0.131 4.131 19 C -0.096 4.096 20 H 0.080 0.920 21 C -0.058 4.058 22 N -0.384 5.384 23 C -0.141 4.141 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.152 0.848 31 H 0.077 0.923 32 H 0.042 0.958 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.048 0.952 38 H 0.090 0.910 39 H 0.157 0.843 40 H 0.163 0.837 41 H 0.080 0.920 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.607 1.592 -15.298 15.392 hybrid contribution -0.380 -1.819 -1.549 2.419 sum -0.987 -0.227 -16.847 16.878 Atomic orbital electron populations 1.21488 0.94818 1.00183 1.01495 1.22051 0.97772 0.99933 0.98457 1.19070 0.92952 0.89306 0.88462 0.99411 1.22085 1.30312 1.16590 0.92251 0.93768 1.26966 0.96851 0.95950 1.02854 1.70920 1.21672 1.30265 1.34886 0.83062 0.75512 0.75529 0.72924 1.19547 1.20280 1.21403 1.60669 1.04674 1.62615 1.03125 1.21463 0.93424 0.95666 0.91406 0.96761 1.21453 0.95772 0.99294 0.97357 1.21537 0.97506 1.01288 0.94891 1.21386 0.97269 0.98740 0.95671 1.21064 0.95494 0.99499 0.93507 0.92013 1.21716 0.92915 1.00827 0.90382 1.58672 1.40975 1.33296 1.05495 1.21621 0.97700 1.02298 0.92455 0.93283 0.93236 0.92643 0.94797 0.94572 0.93531 0.84788 0.92269 0.95757 0.92873 0.91351 0.90339 0.92302 0.95166 0.90977 0.84335 0.83682 0.92014 0.91165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.01 9.40 71.98 0.68 -4.33 16 2 C -0.14 -6.63 5.46 30.59 0.17 -6.46 16 3 C 0.21 10.68 1.76 44.17 0.08 10.76 16 4 H -0.01 -0.69 6.40 -2.39 -0.02 -0.70 16 5 C -0.57 -32.12 7.21 25.60 0.18 -31.93 16 6 H 0.04 2.52 7.83 -2.91 -0.02 2.50 16 7 C -0.03 -1.62 5.23 84.65 0.44 -1.18 16 8 N -0.94 -57.31 12.92 21.45 0.28 -57.03 16 9 Si 1.11 50.94 29.91 68.60 2.05 53.00 16 10 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 12 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 13 N -0.68 -28.86 6.04 -473.30 -2.86 -31.72 16 14 C 0.09 3.22 2.30 44.92 0.10 3.33 16 15 H 0.01 0.56 7.17 -2.39 -0.02 0.54 16 16 C -0.10 -3.56 5.40 30.60 0.17 -3.40 16 17 C -0.11 -3.15 5.92 30.59 0.18 -2.97 16 18 C -0.09 -2.16 5.09 30.59 0.16 -2.00 16 19 C -0.08 -1.70 2.33 -10.79 -0.03 -1.73 16 20 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 21 C 0.07 1.29 6.18 86.30 0.53 1.83 16 22 N -0.85 -12.94 9.08 -186.71 -1.69 -14.64 16 23 C -0.10 -2.76 4.48 30.59 0.14 -2.63 16 24 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 25 H 0.05 2.26 6.89 -2.39 -0.02 2.24 16 26 H 0.05 1.98 6.62 -2.39 -0.02 1.97 16 27 H 0.03 1.44 7.45 -2.39 -0.02 1.42 16 28 H 0.04 1.89 6.37 -2.39 -0.02 1.87 16 29 H 0.25 15.82 6.09 -92.71 -0.56 15.25 16 30 H 0.33 13.13 6.24 -89.70 -0.56 12.58 16 31 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 32 H 0.02 1.01 7.37 -2.39 -0.02 0.99 16 33 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.08 1.70 7.75 -2.38 -0.02 1.68 16 36 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.03 0.51 8.14 -2.38 -0.02 0.49 16 38 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.34 4.70 8.99 -89.70 -0.81 3.89 16 40 H 0.35 4.01 9.08 -89.69 -0.81 3.19 16 41 H 0.06 1.58 8.12 -2.39 -0.02 1.56 16 42 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 Total: -1.00 -63.17 315.68 -0.40 -63.57 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: -0.97 Total: 27.54 kcal Atomic # 6 Polarization: -43.52 SS G_CDS: 2.80 Total: -40.72 kcal Atomic # 7 Polarization: -99.11 SS G_CDS: -4.28 Total: -103.39 kcal Atomic # 14 Polarization: 50.94 SS G_CDS: 2.05 Total: 53.00 kcal Total: -63.17 -0.40 -63.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724119527.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.455 kcal (2) G-P(sol) polarization free energy of solvation -63.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds