Wall clock time and date at job start Mon Mar 30 2020 03:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47355 * 2 1 4 4 H 1.08997 * 109.46978 * 305.63809 * 3 2 1 5 5 C 1.50704 * 109.47000 * 185.63569 * 3 2 1 6 6 H 1.08001 * 119.99415 * 239.99932 * 5 3 2 7 7 C 1.37871 * 120.00201 * 60.00115 * 5 3 2 8 8 N 1.31514 * 119.99835 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00113 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47172 * 60.00023 * 9 7 5 11 11 H 1.48508 * 109.47246 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.46982 * 299.99856 * 9 7 5 13 13 N 1.46905 * 109.46812 * 65.63566 * 3 2 1 14 14 C 1.46903 * 110.99682 * 203.31456 * 13 3 2 15 15 H 1.09003 * 109.47033 * 325.73134 * 14 13 3 16 16 C 1.52996 * 109.46778 * 85.73361 * 14 13 3 17 17 C 1.52996 * 109.47409 * 59.99990 * 16 14 13 18 18 C 1.52992 * 109.47371 * 59.99610 * 17 16 14 19 19 C 1.53004 * 109.47400 * 300.00555 * 18 17 16 20 20 H 1.09001 * 109.46679 * 299.99785 * 19 18 17 21 21 C 1.52997 * 109.47120 * 179.97438 * 19 18 17 22 22 N 1.46902 * 109.47296 * 65.00134 * 21 19 18 23 23 C 1.52996 * 109.47312 * 59.99409 * 19 18 17 24 24 H 1.09000 * 109.47596 * 174.14227 * 1 2 3 25 25 H 1.09001 * 109.47299 * 294.13998 * 1 2 3 26 26 H 1.09002 * 109.47269 * 54.14074 * 1 2 3 27 27 H 1.09008 * 109.47351 * 239.99657 * 2 1 3 28 28 H 1.09007 * 109.46940 * 119.99865 * 2 1 3 29 29 H 0.97001 * 120.00318 * 180.02562 * 8 7 5 30 30 H 1.00896 * 111.00437 * 327.27472 * 13 3 2 31 31 H 1.09001 * 109.47262 * 180.02562 * 16 14 13 32 32 H 1.08998 * 109.47335 * 299.99688 * 16 14 13 33 33 H 1.09001 * 109.46942 * 299.99682 * 17 16 14 34 34 H 1.08995 * 109.47434 * 180.02562 * 17 16 14 35 35 H 1.09002 * 109.47851 * 180.02562 * 18 17 16 36 36 H 1.09001 * 109.47029 * 60.00125 * 18 17 16 37 37 H 1.09003 * 109.46832 * 184.99398 * 21 19 18 38 38 H 1.08999 * 109.47566 * 304.99746 * 21 19 18 39 39 H 1.00899 * 111.00114 * 56.04536 * 22 21 19 40 40 H 1.00902 * 110.99708 * 179.97438 * 22 21 19 41 41 H 1.09001 * 109.46943 * 59.99981 * 23 19 18 42 42 H 1.08995 * 109.47434 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5966 1.9846 -0.8352 5 6 3.5406 1.4447 -0.1395 6 1 4.1539 1.8864 0.6319 7 6 4.1303 0.8829 -1.2519 8 7 3.3833 0.3455 -2.1915 9 14 5.9902 0.8863 -1.4252 10 1 6.5947 0.1481 -0.2873 11 1 6.3698 0.2275 -2.7009 12 1 6.4848 2.2866 -1.4256 13 7 1.6645 2.0946 1.2617 14 6 1.6229 3.5549 1.1075 15 1 2.3940 3.8680 0.4035 16 6 0.2494 3.9729 0.5788 17 6 -0.8328 3.5334 1.5669 18 6 -0.5850 4.1966 2.9231 19 6 0.7886 3.7786 3.4519 20 1 0.8195 2.6951 3.5663 21 6 1.0367 4.4424 4.8078 22 7 0.0703 3.9296 5.7882 23 6 1.8709 4.2181 2.4638 24 1 -0.3634 -1.0223 -0.1049 25 1 -0.3634 0.4203 0.9378 26 1 -0.3634 0.6020 -0.8329 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5138 0.8901 29 1 3.7982 -0.0501 -2.9740 30 1 0.7830 1.7417 1.6028 31 1 0.2186 5.0564 0.4639 32 1 0.0728 3.5003 -0.3874 33 1 -0.8020 2.4498 1.6813 34 1 -1.8114 3.8308 1.1900 35 1 -1.3557 3.8832 3.6273 36 1 -0.6158 5.2802 2.8087 37 1 2.0490 4.2165 5.1431 38 1 0.9182 5.5217 4.7112 39 1 0.1160 2.9234 5.8488 40 1 0.2139 4.3528 6.6929 41 1 1.8399 5.3017 2.3493 42 1 2.8494 3.9208 2.8407 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724119529.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:49 Heat of formation + Delta-G solvation = -29.852844 kcal Electronic energy + Delta-G solvation = -18598.576041 eV Core-core repulsion = 15997.893361 eV Total energy + Delta-G solvation = -2600.682680 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.06446 -35.85127 -34.10834 -31.91673 -31.02235 -30.18769 -28.11612 -25.98998 -24.36431 -22.75227 -21.94856 -20.60917 -19.58569 -18.42553 -16.14117 -15.95457 -15.04447 -14.75422 -14.48635 -14.33427 -14.15118 -13.90723 -13.06864 -12.73273 -12.69720 -12.20196 -11.87449 -11.57934 -11.54208 -11.49733 -11.22778 -11.00019 -10.81244 -10.65059 -10.59591 -10.15208 -9.89285 -9.81250 -9.64047 -9.61541 -9.30147 -8.96688 -8.64574 -8.30419 -7.08437 -5.92061 -3.95908 3.35888 3.40064 3.43439 4.48171 4.61209 4.97661 5.14223 5.22830 5.34738 5.41824 5.51745 5.60357 5.78800 5.87282 5.93874 5.97274 6.04043 6.11988 6.19836 6.21223 6.25458 6.30836 6.43502 6.52100 6.56272 6.66810 6.83190 6.86650 6.87510 6.90683 7.13271 7.17279 7.27096 7.42003 7.60892 7.84298 7.98036 8.42208 8.47518 8.88077 9.12460 9.68938 11.13105 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026707 B = 0.006804 C = 0.006113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.159419 B = 4114.473549 C = 4579.589213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.219 3.781 4 H 0.001 0.999 5 C -0.491 4.491 6 H 0.059 0.941 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.680 5.680 14 C 0.095 3.905 15 H 0.080 0.920 16 C -0.148 4.148 17 C -0.121 4.121 18 C -0.100 4.100 19 C -0.082 4.082 20 H 0.076 0.924 21 C 0.065 3.935 22 N -0.851 5.851 23 C -0.098 4.098 24 H 0.036 0.964 25 H 0.034 0.966 26 H 0.042 0.958 27 H 0.098 0.902 28 H 0.039 0.961 29 H 0.259 0.741 30 H 0.318 0.682 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.025 0.975 38 H 0.065 0.935 39 H 0.340 0.660 40 H 0.335 0.665 41 H 0.050 0.950 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.717 6.205 9.905 13.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C 0.111 3.889 4 H 0.019 0.981 5 C -0.530 4.530 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.205 1.205 13 N -0.312 5.312 14 C -0.016 4.016 15 H 0.098 0.902 16 C -0.187 4.187 17 C -0.159 4.159 18 C -0.138 4.138 19 C -0.101 4.101 20 H 0.094 0.906 21 C -0.066 4.066 22 N -0.379 5.379 23 C -0.137 4.137 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.116 0.884 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.138 0.862 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.043 0.957 38 H 0.084 0.916 39 H 0.152 0.848 40 H 0.146 0.854 41 H 0.069 0.931 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.596 6.418 9.485 13.217 hybrid contribution 1.043 -0.289 -0.255 1.112 sum -5.553 6.129 9.230 12.393 Atomic orbital electron populations 1.21892 0.99699 0.99576 0.99479 1.21752 0.91140 1.00589 1.02873 1.19140 0.95149 0.89824 0.84762 0.98144 1.21196 0.91449 1.36292 1.04051 0.92246 1.24950 0.97897 0.95780 0.95927 1.69865 1.34647 1.39629 1.09572 0.86641 0.86053 0.78066 0.77062 1.20407 1.21521 1.20509 1.60830 1.35015 1.02314 1.33091 1.21379 0.94862 0.90052 0.95335 0.90178 1.22198 0.97146 1.00547 0.98846 1.21555 0.98018 1.00601 0.95681 1.21435 0.96976 0.99519 0.95865 1.21105 0.95278 1.00731 0.92968 0.90570 1.21881 0.92617 0.99399 0.92664 1.58753 1.55973 1.11373 1.11844 1.21538 0.98311 0.98346 0.95496 0.94522 0.94678 0.93921 0.88391 0.94242 0.93128 0.86238 0.92663 0.92248 0.92031 0.92864 0.91624 0.93009 0.95711 0.91620 0.84799 0.85389 0.93095 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.63 37.15 0.36 -2.56 16 2 C -0.13 -2.96 5.37 -26.73 -0.14 -3.10 16 3 C 0.22 5.39 1.85 -68.86 -0.13 5.26 16 4 H 0.00 0.03 7.17 -51.93 -0.37 -0.35 16 5 C -0.49 -13.50 8.41 -34.44 -0.29 -13.79 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -25.61 11.29 55.43 0.63 -24.98 16 9 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.68 -14.07 5.54 -100.95 -0.56 -14.63 16 14 C 0.09 1.76 2.66 -67.71 -0.18 1.58 16 15 H 0.08 1.71 7.56 -51.93 -0.39 1.31 16 16 C -0.15 -2.44 5.51 -26.74 -0.15 -2.59 16 17 C -0.12 -1.76 5.67 -26.74 -0.15 -1.91 16 18 C -0.10 -1.34 5.09 -26.73 -0.14 -1.48 16 19 C -0.08 -1.13 2.10 -90.62 -0.19 -1.32 16 20 H 0.08 1.17 7.23 -51.93 -0.38 0.80 16 21 C 0.06 0.77 6.17 -3.82 -0.02 0.75 16 22 N -0.85 -8.87 9.08 -10.37 -0.09 -8.96 16 23 C -0.10 -1.54 4.92 -26.73 -0.13 -1.67 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.03 0.62 6.06 -51.93 -0.31 0.30 16 26 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.10 2.61 5.94 -51.92 -0.31 2.30 16 28 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.32 6.12 3.55 -39.29 -0.14 5.98 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.06 1.09 7.46 -51.93 -0.39 0.70 16 33 H 0.06 0.95 5.64 -51.93 -0.29 0.66 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.87 7.75 -51.93 -0.40 0.47 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.34 3.39 8.99 -39.29 -0.35 3.04 16 40 H 0.33 2.84 9.08 -39.29 -0.36 2.48 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 313.41 15.07 4.72 4.72 Total: -1.00 -27.78 313.41 -9.05 -36.83 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -7.47 Total: 9.85 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: -1.26 Total: -19.42 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: -0.03 Total: -48.58 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.78 -9.05 -36.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724119529.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.978 kcal (2) G-P(sol) polarization free energy of solvation -27.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds