Wall clock time and date at job start Mon Mar 30 2020 03:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47355 * 2 1 4 4 H 1.08997 * 109.46978 * 305.63809 * 3 2 1 5 5 C 1.50704 * 109.47000 * 185.63569 * 3 2 1 6 6 H 1.08001 * 119.99415 * 239.99932 * 5 3 2 7 7 C 1.37871 * 120.00201 * 60.00115 * 5 3 2 8 8 N 1.31514 * 119.99835 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00113 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47172 * 60.00023 * 9 7 5 11 11 H 1.48508 * 109.47246 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.46982 * 299.99856 * 9 7 5 13 13 N 1.46905 * 109.46812 * 65.63566 * 3 2 1 14 14 C 1.46903 * 110.99682 * 203.31456 * 13 3 2 15 15 H 1.09003 * 109.47033 * 325.73134 * 14 13 3 16 16 C 1.52996 * 109.46778 * 85.73361 * 14 13 3 17 17 C 1.52996 * 109.47409 * 59.99990 * 16 14 13 18 18 C 1.52992 * 109.47371 * 59.99610 * 17 16 14 19 19 C 1.53004 * 109.47400 * 300.00555 * 18 17 16 20 20 H 1.09001 * 109.46679 * 299.99785 * 19 18 17 21 21 C 1.52997 * 109.47120 * 179.97438 * 19 18 17 22 22 N 1.46902 * 109.47296 * 65.00134 * 21 19 18 23 23 C 1.52996 * 109.47312 * 59.99409 * 19 18 17 24 24 H 1.09000 * 109.47596 * 174.14227 * 1 2 3 25 25 H 1.09001 * 109.47299 * 294.13998 * 1 2 3 26 26 H 1.09002 * 109.47269 * 54.14074 * 1 2 3 27 27 H 1.09008 * 109.47351 * 239.99657 * 2 1 3 28 28 H 1.09007 * 109.46940 * 119.99865 * 2 1 3 29 29 H 0.97001 * 120.00318 * 180.02562 * 8 7 5 30 30 H 1.00896 * 111.00437 * 327.27472 * 13 3 2 31 31 H 1.09001 * 109.47262 * 180.02562 * 16 14 13 32 32 H 1.08998 * 109.47335 * 299.99688 * 16 14 13 33 33 H 1.09001 * 109.46942 * 299.99682 * 17 16 14 34 34 H 1.08995 * 109.47434 * 180.02562 * 17 16 14 35 35 H 1.09002 * 109.47851 * 180.02562 * 18 17 16 36 36 H 1.09001 * 109.47029 * 60.00125 * 18 17 16 37 37 H 1.09003 * 109.46832 * 184.99398 * 21 19 18 38 38 H 1.08999 * 109.47566 * 304.99746 * 21 19 18 39 39 H 1.00899 * 111.00114 * 56.04536 * 22 21 19 40 40 H 1.00902 * 110.99708 * 179.97438 * 22 21 19 41 41 H 1.09001 * 109.46943 * 59.99981 * 23 19 18 42 42 H 1.08995 * 109.47434 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5966 1.9846 -0.8352 5 6 3.5406 1.4447 -0.1395 6 1 4.1539 1.8864 0.6319 7 6 4.1303 0.8829 -1.2519 8 7 3.3833 0.3455 -2.1915 9 14 5.9902 0.8863 -1.4252 10 1 6.5947 0.1481 -0.2873 11 1 6.3698 0.2275 -2.7009 12 1 6.4848 2.2866 -1.4256 13 7 1.6645 2.0946 1.2617 14 6 1.6229 3.5549 1.1075 15 1 2.3940 3.8680 0.4035 16 6 0.2494 3.9729 0.5788 17 6 -0.8328 3.5334 1.5669 18 6 -0.5850 4.1966 2.9231 19 6 0.7886 3.7786 3.4519 20 1 0.8195 2.6951 3.5663 21 6 1.0367 4.4424 4.8078 22 7 0.0703 3.9296 5.7882 23 6 1.8709 4.2181 2.4638 24 1 -0.3634 -1.0223 -0.1049 25 1 -0.3634 0.4203 0.9378 26 1 -0.3634 0.6020 -0.8329 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5138 0.8901 29 1 3.7982 -0.0501 -2.9740 30 1 0.7830 1.7417 1.6028 31 1 0.2186 5.0564 0.4639 32 1 0.0728 3.5003 -0.3874 33 1 -0.8020 2.4498 1.6813 34 1 -1.8114 3.8308 1.1900 35 1 -1.3557 3.8832 3.6273 36 1 -0.6158 5.2802 2.8087 37 1 2.0490 4.2165 5.1431 38 1 0.9182 5.5217 4.7112 39 1 0.1160 2.9234 5.8488 40 1 0.2139 4.3528 6.6929 41 1 1.8399 5.3017 2.3493 42 1 2.8494 3.9208 2.8407 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724119529.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:49 Heat of formation + Delta-G solvation = -47.990580 kcal Electronic energy + Delta-G solvation = -18599.362552 eV Core-core repulsion = 15997.893361 eV Total energy + Delta-G solvation = -2601.469191 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.42487 -37.42092 -35.42336 -33.83850 -32.54641 -31.34657 -29.68145 -27.93334 -25.44967 -24.62702 -23.21035 -21.78421 -21.45915 -19.81104 -18.25096 -17.12112 -16.60904 -16.40165 -15.70599 -15.63573 -15.43971 -15.29860 -14.66027 -14.38762 -14.23563 -13.64624 -13.24427 -13.17863 -12.88581 -12.84634 -12.78815 -12.60844 -12.54582 -12.50315 -11.98357 -11.83493 -11.54920 -11.46828 -11.24643 -11.04637 -10.86162 -10.71460 -10.41428 -9.48563 -8.85310 -8.04700 -6.16661 1.40613 1.41818 1.49590 2.44148 3.19779 3.70529 3.73154 3.87189 4.04021 4.06728 4.30877 4.42900 4.49161 4.56250 4.57521 4.68063 4.72851 4.74060 4.82634 4.86819 4.94594 4.97054 5.08745 5.09348 5.23818 5.25846 5.34450 5.38188 5.43193 5.55206 5.56300 5.65451 5.69520 5.80408 5.93255 6.30701 6.40882 6.60861 6.69024 6.98811 7.12426 7.52616 8.97882 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026707 B = 0.006804 C = 0.006113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.159419 B = 4114.473549 C = 4579.589213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.121 4.121 3 C 0.227 3.773 4 H -0.034 1.034 5 C -0.510 4.510 6 H 0.047 0.953 7 C 0.009 3.991 8 N -0.920 5.920 9 Si 0.953 3.047 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.275 1.275 13 N -0.677 5.677 14 C 0.091 3.909 15 H 0.042 0.958 16 C -0.141 4.141 17 C -0.116 4.116 18 C -0.091 4.091 19 C -0.076 4.076 20 H 0.060 0.940 21 C 0.072 3.928 22 N -0.851 5.851 23 C -0.091 4.091 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.035 0.965 27 H 0.066 0.934 28 H 0.034 0.966 29 H 0.259 0.741 30 H 0.328 0.672 31 H 0.071 0.929 32 H 0.033 0.967 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.022 0.978 38 H 0.073 0.927 39 H 0.343 0.657 40 H 0.348 0.652 41 H 0.069 0.931 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.537 6.963 11.492 15.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.160 4.160 3 C 0.119 3.881 4 H -0.016 1.016 5 C -0.548 4.548 6 H 0.065 0.935 7 C -0.189 4.189 8 N -0.561 5.561 9 Si 0.780 3.220 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.201 1.201 13 N -0.311 5.311 14 C -0.019 4.019 15 H 0.060 0.940 16 C -0.181 4.181 17 C -0.154 4.154 18 C -0.129 4.129 19 C -0.095 4.095 20 H 0.079 0.921 21 C -0.059 4.059 22 N -0.381 5.381 23 C -0.129 4.129 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.054 0.946 27 H 0.084 0.916 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.149 0.851 31 H 0.090 0.910 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.040 0.960 38 H 0.092 0.908 39 H 0.155 0.845 40 H 0.161 0.839 41 H 0.087 0.913 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.427 7.187 11.097 15.164 hybrid contribution 1.295 -0.498 -0.752 1.579 sum -6.131 6.689 10.345 13.761 Atomic orbital electron populations 1.21745 0.96394 1.00979 1.00316 1.21584 0.94121 0.99299 1.00957 1.18878 0.93630 0.90391 0.85225 1.01627 1.21467 0.93058 1.36339 1.03983 0.93451 1.25664 1.02099 0.95473 0.95652 1.69998 1.36182 1.40044 1.09850 0.85690 0.81045 0.78144 0.77170 1.19920 1.20932 1.20097 1.60747 1.35780 1.03645 1.30886 1.21395 0.95146 0.88854 0.96527 0.93951 1.22098 0.96483 1.01351 0.98137 1.21530 0.97906 1.00046 0.95877 1.21367 0.96611 0.99907 0.94982 1.21011 0.94866 0.99910 0.93692 0.92146 1.21738 0.92842 0.99574 0.91759 1.58715 1.55255 1.11747 1.12430 1.21447 0.98398 0.99074 0.94028 0.92493 0.92572 0.94613 0.91564 0.94740 0.93169 0.85126 0.90991 0.94775 0.93035 0.91136 0.90729 0.92028 0.96011 0.90850 0.84472 0.83936 0.91256 0.93242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.27 9.63 71.98 0.69 -4.58 16 2 C -0.12 -5.84 5.37 30.59 0.16 -5.67 16 3 C 0.23 11.57 1.85 44.17 0.08 11.65 16 4 H -0.03 -1.93 7.17 -2.39 -0.02 -1.94 16 5 C -0.51 -28.92 8.41 25.60 0.22 -28.70 16 6 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 7 C 0.01 0.51 5.29 84.65 0.45 0.96 16 8 N -0.92 -53.90 11.29 21.45 0.24 -53.66 16 9 Si 0.95 44.99 29.54 68.60 2.03 47.01 16 10 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 13 N -0.68 -28.49 5.54 -473.29 -2.62 -31.11 16 14 C 0.09 3.43 2.66 44.91 0.12 3.55 16 15 H 0.04 1.89 7.56 -2.39 -0.02 1.87 16 16 C -0.14 -4.60 5.51 30.59 0.17 -4.43 16 17 C -0.12 -3.13 5.67 30.59 0.17 -2.96 16 18 C -0.09 -2.17 5.09 30.59 0.16 -2.01 16 19 C -0.08 -1.94 2.10 -10.79 -0.02 -1.96 16 20 H 0.06 1.76 7.23 -2.39 -0.02 1.74 16 21 C 0.07 1.51 6.17 86.30 0.53 2.05 16 22 N -0.85 -15.33 9.08 -186.72 -1.70 -17.02 16 23 C -0.09 -2.76 4.92 30.59 0.15 -2.61 16 24 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.06 1.91 6.06 -2.39 -0.01 1.89 16 26 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.07 3.63 5.94 -2.38 -0.01 3.62 16 28 H 0.03 1.65 8.14 -2.38 -0.02 1.63 16 29 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 30 H 0.33 12.52 3.55 -89.70 -0.32 12.20 16 31 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.03 1.27 7.46 -2.39 -0.02 1.25 16 33 H 0.05 1.50 5.64 -2.39 -0.01 1.48 16 34 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.07 1.71 7.75 -2.39 -0.02 1.69 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.37 16 37 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 39 H 0.34 5.98 8.99 -89.69 -0.81 5.17 16 40 H 0.35 4.89 9.08 -89.69 -0.81 4.07 16 41 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -60.83 313.41 -0.11 -60.93 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: -0.94 Total: 28.56 kcal Atomic # 6 Polarization: -37.60 SS G_CDS: 2.88 Total: -34.72 kcal Atomic # 7 Polarization: -97.72 SS G_CDS: -4.08 Total: -101.79 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -60.83 -0.11 -60.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724119529.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.943 kcal (2) G-P(sol) polarization free energy of solvation -60.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds