Wall clock time and date at job start Mon Mar 30 2020 03:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47087 * 2 1 4 4 H 1.09001 * 109.47760 * 304.00238 * 3 2 1 5 5 C 1.50707 * 109.47215 * 184.00232 * 3 2 1 6 6 H 1.07990 * 120.00112 * 240.00205 * 5 3 2 7 7 C 1.37879 * 119.99683 * 60.00229 * 5 3 2 8 8 N 1.31518 * 119.99948 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99799 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47023 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47197 * 119.99978 * 9 7 5 12 12 H 1.48502 * 109.46827 * 239.99978 * 9 7 5 13 13 N 1.46898 * 109.47349 * 64.00536 * 3 2 1 14 14 C 1.46896 * 111.00513 * 203.92434 * 13 3 2 15 15 H 1.09001 * 109.46604 * 325.44550 * 14 13 3 16 16 C 1.52993 * 109.47283 * 85.44249 * 14 13 3 17 17 C 1.53000 * 109.47106 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.47313 * 300.00210 * 17 16 14 19 19 C 1.53001 * 109.47109 * 60.00086 * 18 17 16 20 20 H 1.08992 * 109.47029 * 59.99682 * 19 18 17 21 21 C 1.52989 * 109.47242 * 180.02562 * 19 18 17 22 22 N 1.46906 * 109.47018 * 294.99910 * 21 19 18 23 23 C 1.53001 * 109.46646 * 299.99921 * 19 18 17 24 24 H 1.09003 * 109.46942 * 174.92162 * 1 2 3 25 25 H 1.08999 * 109.47225 * 294.91816 * 1 2 3 26 26 H 1.08994 * 109.47226 * 54.92602 * 1 2 3 27 27 H 1.09005 * 109.46976 * 240.00138 * 2 1 3 28 28 H 1.08998 * 109.47288 * 120.00748 * 2 1 3 29 29 H 0.97000 * 119.99362 * 180.02562 * 8 7 5 30 30 H 1.00898 * 110.99877 * 79.96309 * 13 3 2 31 31 H 1.09001 * 109.47055 * 60.00577 * 16 14 13 32 32 H 1.08997 * 109.47490 * 300.00068 * 16 14 13 33 33 H 1.09003 * 109.47292 * 60.00320 * 17 16 14 34 34 H 1.09008 * 109.46749 * 180.02562 * 17 16 14 35 35 H 1.08995 * 109.47219 * 180.02562 * 18 17 16 36 36 H 1.08998 * 109.46593 * 300.00092 * 18 17 16 37 37 H 1.09011 * 109.47378 * 54.99654 * 21 19 18 38 38 H 1.08998 * 109.47568 * 174.99886 * 21 19 18 39 39 H 1.00898 * 110.99847 * 179.97438 * 22 21 19 40 40 H 1.00893 * 110.99854 * 303.94936 * 22 21 19 41 41 H 1.08994 * 109.47721 * 299.99630 * 23 19 18 42 42 H 1.09007 * 109.46994 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6193 1.9767 -0.8519 5 6 3.5437 1.4436 -0.0992 6 1 4.1362 1.8927 0.6841 7 6 4.1631 0.8714 -1.1900 8 7 3.4415 0.3250 -2.1442 9 14 6.0271 0.8722 -1.3127 10 1 6.6013 1.5432 -0.1189 11 1 6.5195 -0.5273 -1.3781 12 1 6.4421 1.6008 -2.5383 13 7 1.6309 2.1065 1.2448 14 6 1.5796 3.5643 1.0717 15 1 2.3664 3.8764 0.3850 16 6 0.2171 3.9625 0.5010 17 6 0.1639 5.4808 0.3201 18 6 0.3690 6.1633 1.6740 19 6 1.7316 5.7651 2.2447 20 1 2.5183 6.0769 1.5578 21 6 1.9365 6.4470 3.5988 22 7 2.0048 7.9022 3.4089 23 6 1.7847 4.2468 2.4256 24 1 -0.3633 -1.0237 -0.0910 25 1 -0.3633 0.4330 0.9320 26 1 -0.3633 0.5905 -0.8410 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8773 -0.0779 -2.9115 30 1 2.2420 1.8541 2.0070 31 1 -0.5697 3.6504 1.1878 32 1 0.0711 3.4767 -0.4637 33 1 0.9507 5.7927 -0.3668 34 1 -0.8071 5.7645 -0.0861 35 1 0.3307 7.2449 1.5452 36 1 -0.4178 5.8515 2.3609 37 1 1.1020 6.2054 4.2573 38 1 2.8660 6.0949 4.0461 39 1 2.1395 8.3758 4.2896 40 1 2.7300 8.1473 2.7516 41 1 0.9980 3.9349 3.1126 42 1 2.7556 3.9630 2.8318 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724119531.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:52 Heat of formation + Delta-G solvation = -37.428607 kcal Electronic energy + Delta-G solvation = -18275.385588 eV Core-core repulsion = 15674.374398 eV Total energy + Delta-G solvation = -2601.011190 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.76990 -35.94440 -34.17566 -32.16910 -31.09129 -30.21691 -28.08282 -25.67217 -24.40755 -22.69055 -21.79341 -20.30644 -19.32200 -19.17880 -16.53736 -15.96383 -14.82810 -14.74889 -14.56547 -14.39439 -14.00168 -13.65223 -13.36681 -12.78045 -12.76030 -12.06320 -11.79035 -11.64822 -11.54727 -11.24143 -11.13967 -10.95361 -10.73091 -10.63595 -10.58485 -10.28256 -10.01241 -9.99293 -9.64724 -9.48670 -9.33589 -8.95790 -8.73553 -8.35164 -7.18228 -5.97499 -4.10395 3.25514 3.34130 3.36877 4.40047 4.48752 4.86652 5.06839 5.13134 5.27664 5.43554 5.56375 5.58996 5.73272 5.85613 5.93650 5.95734 6.05167 6.09306 6.21311 6.31601 6.43842 6.53789 6.58677 6.59318 6.62644 6.72892 6.76994 6.87002 7.02692 7.04042 7.18516 7.22049 7.32786 7.50484 7.64896 7.80855 8.13484 8.21932 8.39766 8.73811 9.04050 9.57154 11.02219 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022279 B = 0.006775 C = 0.005737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.459858 B = 4131.896018 C = 4879.309846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.033 0.967 5 C -0.542 4.542 6 H 0.052 0.948 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.687 5.687 14 C 0.096 3.904 15 H 0.045 0.955 16 C -0.103 4.103 17 C -0.121 4.121 18 C -0.100 4.100 19 C -0.082 4.082 20 H 0.065 0.935 21 C 0.065 3.935 22 N -0.850 5.850 23 C -0.112 4.112 24 H 0.023 0.977 25 H 0.046 0.954 26 H 0.036 0.964 27 H 0.089 0.911 28 H 0.029 0.971 29 H 0.260 0.740 30 H 0.325 0.675 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.024 0.976 39 H 0.336 0.664 40 H 0.339 0.661 41 H 0.063 0.937 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.917 9.982 8.089 13.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.051 0.949 5 C -0.582 4.582 6 H 0.070 0.930 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.316 5.316 14 C -0.015 4.015 15 H 0.063 0.937 16 C -0.141 4.141 17 C -0.159 4.159 18 C -0.137 4.137 19 C -0.102 4.102 20 H 0.084 0.916 21 C -0.065 4.065 22 N -0.379 5.379 23 C -0.150 4.150 24 H 0.042 0.958 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.107 0.893 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.142 0.858 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.042 0.958 39 H 0.148 0.852 40 H 0.151 0.849 41 H 0.082 0.918 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.328 9.712 7.514 13.386 hybrid contribution 3.118 0.017 0.171 3.123 sum -2.210 9.729 7.685 12.594 Atomic orbital electron populations 1.21678 0.99002 0.98136 1.00390 1.21493 0.92085 0.99379 1.01545 1.19168 0.92394 0.91021 0.86683 0.94919 1.21923 0.92873 1.37613 1.05765 0.92984 1.24932 0.97822 0.95102 0.95693 1.69893 1.34707 1.38147 1.09591 0.86637 0.86329 0.77726 0.77866 1.20019 1.20965 1.21072 1.60920 1.56479 1.05093 1.09082 1.21258 0.96139 0.89471 0.94588 0.93736 1.21496 0.97762 0.93777 1.01054 1.21578 1.00864 0.96316 0.97147 1.21429 0.95989 1.00018 0.96308 1.21128 0.98471 0.95026 0.95543 0.91631 1.21871 0.99691 0.87324 0.97641 1.58720 1.55368 1.07953 1.15881 1.21721 1.01184 0.93672 0.98461 0.95814 0.93449 0.94499 0.89307 0.95228 0.92993 0.85814 0.92309 0.92262 0.92474 0.92651 0.91622 0.92651 0.91192 0.95802 0.85183 0.84892 0.91800 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.73 37.16 0.36 -2.45 16 2 C -0.11 -2.57 5.44 -26.74 -0.15 -2.72 16 3 C 0.22 5.31 1.80 -68.87 -0.12 5.19 16 4 H 0.03 0.90 7.15 -51.93 -0.37 0.53 16 5 C -0.54 -14.62 8.21 -34.44 -0.28 -14.90 16 6 H 0.05 1.40 7.76 -52.49 -0.41 1.00 16 7 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 8 N -0.88 -25.11 11.30 55.43 0.63 -24.49 16 9 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 N -0.69 -14.30 5.55 -100.96 -0.56 -14.86 16 14 C 0.10 1.78 2.30 -67.72 -0.16 1.62 16 15 H 0.04 0.96 7.59 -51.93 -0.39 0.57 16 16 C -0.10 -1.76 5.41 -26.73 -0.14 -1.90 16 17 C -0.12 -1.76 5.92 -26.73 -0.16 -1.91 16 18 C -0.10 -1.31 5.09 -26.73 -0.14 -1.45 16 19 C -0.08 -1.09 2.33 -90.62 -0.21 -1.30 16 20 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 21 C 0.07 0.74 6.17 -3.83 -0.02 0.71 16 22 N -0.85 -8.40 9.08 -10.37 -0.09 -8.49 16 23 C -0.11 -1.70 4.47 -26.73 -0.12 -1.82 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.95 7.87 -51.93 -0.41 0.54 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.09 2.39 5.97 -51.93 -0.31 2.08 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.33 6.75 8.06 -39.29 -0.32 6.43 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 1.13 7.45 -51.93 -0.39 0.75 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.74 8.14 -51.92 -0.42 0.31 16 35 H 0.07 0.84 7.75 -51.93 -0.40 0.44 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 38 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 39 H 0.34 2.68 9.08 -39.29 -0.36 2.32 16 40 H 0.34 3.13 8.99 -39.30 -0.35 2.77 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.05 0.85 8.12 -51.92 -0.42 0.42 16 LS Contribution 322.63 15.07 4.86 4.86 Total: -1.00 -27.47 322.63 -9.34 -36.81 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -7.91 Total: 9.18 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -1.23 Total: -19.20 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: -0.03 Total: -47.84 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.47 -9.34 -36.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724119531.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.619 kcal (2) G-P(sol) polarization free energy of solvation -27.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds