Wall clock time and date at job start Mon Mar 30 2020 03:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47087 * 2 1 4 4 H 1.09001 * 109.47760 * 304.00238 * 3 2 1 5 5 C 1.50707 * 109.47215 * 184.00232 * 3 2 1 6 6 H 1.07990 * 120.00112 * 240.00205 * 5 3 2 7 7 C 1.37879 * 119.99683 * 60.00229 * 5 3 2 8 8 N 1.31518 * 119.99948 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99799 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47023 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47197 * 119.99978 * 9 7 5 12 12 H 1.48502 * 109.46827 * 239.99978 * 9 7 5 13 13 N 1.46898 * 109.47349 * 64.00536 * 3 2 1 14 14 C 1.46896 * 111.00513 * 203.92434 * 13 3 2 15 15 H 1.09001 * 109.46604 * 325.44550 * 14 13 3 16 16 C 1.52993 * 109.47283 * 85.44249 * 14 13 3 17 17 C 1.53000 * 109.47106 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.47313 * 300.00210 * 17 16 14 19 19 C 1.53001 * 109.47109 * 60.00086 * 18 17 16 20 20 H 1.08992 * 109.47029 * 59.99682 * 19 18 17 21 21 C 1.52989 * 109.47242 * 180.02562 * 19 18 17 22 22 N 1.46906 * 109.47018 * 294.99910 * 21 19 18 23 23 C 1.53001 * 109.46646 * 299.99921 * 19 18 17 24 24 H 1.09003 * 109.46942 * 174.92162 * 1 2 3 25 25 H 1.08999 * 109.47225 * 294.91816 * 1 2 3 26 26 H 1.08994 * 109.47226 * 54.92602 * 1 2 3 27 27 H 1.09005 * 109.46976 * 240.00138 * 2 1 3 28 28 H 1.08998 * 109.47288 * 120.00748 * 2 1 3 29 29 H 0.97000 * 119.99362 * 180.02562 * 8 7 5 30 30 H 1.00898 * 110.99877 * 79.96309 * 13 3 2 31 31 H 1.09001 * 109.47055 * 60.00577 * 16 14 13 32 32 H 1.08997 * 109.47490 * 300.00068 * 16 14 13 33 33 H 1.09003 * 109.47292 * 60.00320 * 17 16 14 34 34 H 1.09008 * 109.46749 * 180.02562 * 17 16 14 35 35 H 1.08995 * 109.47219 * 180.02562 * 18 17 16 36 36 H 1.08998 * 109.46593 * 300.00092 * 18 17 16 37 37 H 1.09011 * 109.47378 * 54.99654 * 21 19 18 38 38 H 1.08998 * 109.47568 * 174.99886 * 21 19 18 39 39 H 1.00898 * 110.99847 * 179.97438 * 22 21 19 40 40 H 1.00893 * 110.99854 * 303.94936 * 22 21 19 41 41 H 1.08994 * 109.47721 * 299.99630 * 23 19 18 42 42 H 1.09007 * 109.46994 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6193 1.9767 -0.8519 5 6 3.5437 1.4436 -0.0992 6 1 4.1362 1.8927 0.6841 7 6 4.1631 0.8714 -1.1900 8 7 3.4415 0.3250 -2.1442 9 14 6.0271 0.8722 -1.3127 10 1 6.6013 1.5432 -0.1189 11 1 6.5195 -0.5273 -1.3781 12 1 6.4421 1.6008 -2.5383 13 7 1.6309 2.1065 1.2448 14 6 1.5796 3.5643 1.0717 15 1 2.3664 3.8764 0.3850 16 6 0.2171 3.9625 0.5010 17 6 0.1639 5.4808 0.3201 18 6 0.3690 6.1633 1.6740 19 6 1.7316 5.7651 2.2447 20 1 2.5183 6.0769 1.5578 21 6 1.9365 6.4470 3.5988 22 7 2.0048 7.9022 3.4089 23 6 1.7847 4.2468 2.4256 24 1 -0.3633 -1.0237 -0.0910 25 1 -0.3633 0.4330 0.9320 26 1 -0.3633 0.5905 -0.8410 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8773 -0.0779 -2.9115 30 1 2.2420 1.8541 2.0070 31 1 -0.5697 3.6504 1.1878 32 1 0.0711 3.4767 -0.4637 33 1 0.9507 5.7927 -0.3668 34 1 -0.8071 5.7645 -0.0861 35 1 0.3307 7.2449 1.5452 36 1 -0.4178 5.8515 2.3609 37 1 1.1020 6.2054 4.2573 38 1 2.8660 6.0949 4.0461 39 1 2.1395 8.3758 4.2896 40 1 2.7300 8.1473 2.7516 41 1 0.9980 3.9349 3.1126 42 1 2.7556 3.9630 2.8318 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724119531.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:51 Heat of formation + Delta-G solvation = -55.285901 kcal Electronic energy + Delta-G solvation = -18276.159938 eV Core-core repulsion = 15674.374398 eV Total energy + Delta-G solvation = -2601.785540 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.08542 -37.58041 -35.42833 -33.98901 -32.80985 -31.36331 -29.68937 -27.54902 -25.50917 -24.53804 -23.06206 -21.69698 -21.02462 -20.56109 -18.62136 -17.02530 -16.69244 -16.08048 -15.72768 -15.57835 -15.45176 -15.18915 -14.74665 -14.61544 -14.22935 -13.41561 -13.37909 -13.11489 -13.01698 -12.95147 -12.74470 -12.62725 -12.43986 -12.17906 -12.04191 -11.80781 -11.53194 -11.51046 -11.33726 -11.14902 -10.89724 -10.75766 -10.45682 -9.52806 -9.01627 -8.05688 -6.28308 1.34423 1.36926 1.46758 2.38213 3.13129 3.47826 3.76308 3.82941 4.00435 4.22400 4.34922 4.44299 4.50967 4.61977 4.66672 4.69751 4.76603 4.80715 4.82588 4.85639 4.93842 4.97441 5.11183 5.20413 5.28595 5.37435 5.38908 5.44260 5.46700 5.49471 5.54138 5.62269 5.69730 5.80084 6.12844 6.22453 6.26486 6.43183 6.65081 6.87207 7.05158 7.43354 8.90472 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022279 B = 0.006775 C = 0.005737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.459858 B = 4131.896018 C = 4879.309846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.103 4.103 3 C 0.225 3.775 4 H -0.003 1.003 5 C -0.557 4.557 6 H 0.047 0.953 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.949 3.051 10 H -0.271 1.271 11 H -0.278 1.278 12 H -0.282 1.282 13 N -0.677 5.677 14 C 0.096 3.904 15 H 0.008 0.992 16 C -0.097 4.097 17 C -0.116 4.116 18 C -0.091 4.091 19 C -0.078 4.078 20 H 0.053 0.947 21 C 0.073 3.927 22 N -0.853 5.853 23 C -0.102 4.102 24 H 0.043 0.957 25 H 0.058 0.942 26 H 0.028 0.972 27 H 0.059 0.941 28 H 0.028 0.972 29 H 0.261 0.739 30 H 0.327 0.673 31 H 0.067 0.933 32 H 0.029 0.971 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.025 0.975 39 H 0.349 0.651 40 H 0.343 0.657 41 H 0.075 0.925 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.104 11.044 9.638 15.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.142 4.142 3 C 0.116 3.884 4 H 0.015 0.985 5 C -0.596 4.596 6 H 0.065 0.935 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.775 3.225 10 H -0.195 1.195 11 H -0.204 1.204 12 H -0.208 1.208 13 N -0.306 5.306 14 C -0.014 4.014 15 H 0.026 0.974 16 C -0.135 4.135 17 C -0.154 4.154 18 C -0.128 4.128 19 C -0.098 4.098 20 H 0.072 0.928 21 C -0.058 4.058 22 N -0.383 5.383 23 C -0.140 4.140 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.047 0.953 27 H 0.077 0.923 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.143 0.857 31 H 0.085 0.915 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.044 0.956 39 H 0.163 0.837 40 H 0.155 0.845 41 H 0.093 0.907 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.518 10.790 9.081 15.144 hybrid contribution 3.160 -0.302 -0.330 3.192 sum -2.358 10.489 8.751 13.862 Atomic orbital electron populations 1.21528 0.96375 0.99406 1.00591 1.21362 0.94421 0.98487 0.99924 1.18899 0.91174 0.91287 0.87033 0.98522 1.22209 0.94182 1.37442 1.05758 0.93461 1.25669 1.02110 0.94870 0.95452 1.70022 1.36346 1.38704 1.10007 0.85654 0.81182 0.77831 0.77839 1.19522 1.20400 1.20814 1.60881 1.55815 1.06511 1.07394 1.21316 0.95854 0.88201 0.96077 0.97423 1.21426 0.96933 0.95641 0.99486 1.21547 1.01436 0.94256 0.98201 1.21363 0.95957 1.00296 0.95227 1.21069 0.98328 0.93594 0.96794 0.92826 1.21723 1.00045 0.88019 0.96016 1.58679 1.55697 1.07085 1.16871 1.21616 1.01361 0.94906 0.96145 0.93788 0.92326 0.95303 0.92285 0.95338 0.92935 0.85650 0.91475 0.95165 0.93597 0.91001 0.90665 0.91837 0.90601 0.95636 0.83720 0.84471 0.90677 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 9.73 71.98 0.70 -4.33 16 2 C -0.10 -5.07 5.44 30.59 0.17 -4.90 16 3 C 0.22 11.43 1.80 44.17 0.08 11.51 16 4 H 0.00 -0.18 7.15 -2.39 -0.02 -0.20 16 5 C -0.56 -30.69 8.21 25.60 0.21 -30.47 16 6 H 0.05 2.59 7.76 -2.92 -0.02 2.56 16 7 C 0.02 1.05 5.30 84.65 0.45 1.49 16 8 N -0.91 -52.97 11.30 21.45 0.24 -52.73 16 9 Si 0.95 43.95 29.54 68.60 2.03 45.98 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 N -0.68 -28.51 5.55 -473.33 -2.63 -31.14 16 14 C 0.10 3.59 2.30 44.91 0.10 3.70 16 15 H 0.01 0.34 7.59 -2.39 -0.02 0.33 16 16 C -0.10 -3.31 5.41 30.59 0.17 -3.15 16 17 C -0.12 -3.27 5.92 30.59 0.18 -3.09 16 18 C -0.09 -2.19 5.09 30.60 0.16 -2.03 16 19 C -0.08 -1.95 2.33 -10.80 -0.03 -1.97 16 20 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 21 C 0.07 1.45 6.17 86.30 0.53 1.99 16 22 N -0.85 -14.59 9.08 -186.71 -1.70 -16.28 16 23 C -0.10 -2.98 4.47 30.60 0.14 -2.85 16 24 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.06 2.27 7.87 -2.39 -0.02 2.25 16 26 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.06 3.26 5.97 -2.38 -0.01 3.25 16 28 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 30 H 0.33 13.56 8.06 -89.70 -0.72 12.83 16 31 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.03 1.19 7.45 -2.39 -0.02 1.17 16 33 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 35 H 0.07 1.72 7.75 -2.39 -0.02 1.70 16 36 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.35 4.58 9.08 -89.70 -0.81 3.77 16 40 H 0.34 5.56 8.99 -89.70 -0.81 4.75 16 41 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.05 1.54 8.12 -2.38 -0.02 1.52 16 Total: -1.00 -59.46 322.63 -0.55 -60.01 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: -1.35 Total: 28.27 kcal Atomic # 6 Polarization: -36.96 SS G_CDS: 2.86 Total: -34.11 kcal Atomic # 7 Polarization: -96.07 SS G_CDS: -4.08 Total: -100.15 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -59.46 -0.55 -60.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724119531.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.727 kcal (2) G-P(sol) polarization free energy of solvation -59.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds