Wall clock time and date at job start Mon Mar 30 2020 03:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46701 * 2 1 4 4 H 1.09005 * 109.46637 * 174.71322 * 3 2 1 5 5 C 1.50703 * 109.47120 * 54.72203 * 3 2 1 6 6 H 1.07997 * 119.99941 * 244.86532 * 5 3 2 7 7 C 1.37877 * 120.00203 * 64.85620 * 5 3 2 8 8 N 1.31513 * 119.99987 * 6.23397 * 7 5 3 9 9 Si 1.86805 * 120.00181 * 186.22449 * 7 5 3 10 10 H 1.48499 * 109.47176 * 270.00606 * 9 7 5 11 11 H 1.48503 * 109.46549 * 30.00497 * 9 7 5 12 12 H 1.48498 * 109.46773 * 150.00240 * 9 7 5 13 13 N 1.46897 * 109.47393 * 294.72010 * 3 2 1 14 14 C 1.46896 * 110.99935 * 329.86584 * 13 3 2 15 15 C 1.46902 * 110.99769 * 205.91579 * 13 3 2 16 16 C 1.52997 * 110.01776 * 183.22260 * 15 13 3 17 17 N 1.46900 * 109.47147 * 62.61350 * 16 15 13 18 18 C 1.54265 * 110.03479 * 61.82463 * 15 13 3 19 19 C 1.54957 * 104.16396 * 217.13671 * 18 15 13 20 20 C 1.54896 * 102.77836 * 37.88880 * 19 18 15 21 21 C 1.53874 * 110.03076 * 304.61042 * 15 13 3 22 22 H 1.09006 * 109.46922 * 183.80100 * 1 2 3 23 23 H 1.09000 * 109.47157 * 303.79979 * 1 2 3 24 24 H 1.09002 * 109.47442 * 63.80175 * 1 2 3 25 25 H 1.08995 * 109.46832 * 240.00606 * 2 1 3 26 26 H 1.08998 * 109.47231 * 120.00276 * 2 1 3 27 27 H 0.96999 * 120.00029 * 355.35124 * 8 7 5 28 28 H 1.08995 * 109.47194 * 65.15440 * 14 13 3 29 29 H 1.09000 * 109.47162 * 185.16289 * 14 13 3 30 30 H 1.09007 * 109.47347 * 305.15686 * 14 13 3 31 31 H 1.09000 * 109.47092 * 182.61955 * 16 15 13 32 32 H 1.08996 * 109.46798 * 302.61753 * 16 15 13 33 33 H 1.00906 * 110.99691 * 56.05285 * 17 16 15 34 34 H 1.00907 * 110.99942 * 179.97438 * 17 16 15 35 35 H 1.08993 * 110.48551 * 335.78953 * 18 15 13 36 36 H 1.09004 * 110.48147 * 98.42690 * 18 15 13 37 37 H 1.09004 * 110.72455 * 279.57836 * 19 18 15 38 38 H 1.09001 * 110.92666 * 156.30060 * 19 18 15 39 39 H 1.08998 * 110.48777 * 203.40399 * 20 19 18 40 40 H 1.08998 * 110.47982 * 80.76248 * 20 19 18 41 41 H 1.08999 * 110.03414 * 238.57058 * 21 15 13 42 42 H 1.08997 * 110.03522 * 0.02562 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1258 1.4440 0.0947 5 6 1.4336 2.1897 1.1599 6 1 0.7616 3.0154 0.9784 7 6 1.7367 1.8190 2.4529 8 7 2.6469 0.8963 2.6762 9 14 0.8548 2.6274 3.8875 10 1 1.6109 3.8304 4.3190 11 1 -0.5123 3.0266 3.4665 12 1 0.7645 1.6678 5.0172 13 7 1.6571 2.0973 -1.2580 14 6 1.5809 1.1243 -2.3559 15 6 2.5829 3.1897 -1.5859 16 6 2.1187 3.9064 -2.8554 17 7 0.8016 4.5135 -2.6211 18 6 4.0079 2.6330 -1.7844 19 6 4.9284 3.7226 -1.1788 20 6 4.1265 4.2002 0.0573 21 6 2.6582 4.1860 -0.4157 22 1 -0.3633 -1.0255 0.0681 23 1 -0.3633 0.5717 0.8540 24 1 -0.3634 0.4537 -0.9221 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 3.0564 0.4288 1.9315 28 1 0.7748 0.4175 -2.1598 29 1 1.3859 1.6474 -3.2921 30 1 2.5259 0.5860 -2.4306 31 1 2.8361 4.6844 -3.1164 32 1 2.0476 3.1886 -3.6725 33 1 0.8262 5.1351 -1.8266 34 1 0.4730 4.9938 -3.4454 35 1 4.1277 1.6916 -1.2485 36 1 4.2207 2.4990 -2.8450 37 1 5.0737 4.5406 -1.8845 38 1 5.8867 3.2994 -0.8778 39 1 4.4265 5.2092 0.3402 40 1 4.2654 3.5121 0.8912 41 1 2.3648 5.1803 -0.7523 42 1 2.0081 3.8587 0.3957 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725007445.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:12 Heat of formation + Delta-G solvation = 14.598914 kcal Electronic energy + Delta-G solvation = -19699.743660 eV Core-core repulsion = 17100.988553 eV Total energy + Delta-G solvation = -2598.755107 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.54651 -35.68127 -33.67057 -32.55830 -30.52531 -28.45144 -27.18114 -26.63767 -23.97104 -23.29790 -22.78395 -20.14107 -19.44777 -17.72986 -16.70334 -15.80863 -15.33008 -14.80861 -14.09996 -13.90201 -13.66225 -13.51631 -13.08777 -12.70236 -12.44287 -12.28059 -11.78237 -11.50969 -11.28495 -10.95746 -10.80652 -10.66506 -10.55728 -10.37009 -10.22759 -10.07554 -10.02026 -9.77339 -9.69662 -9.53828 -9.23188 -8.43502 -8.23267 -8.12235 -6.90857 -6.19129 -3.87616 3.47336 3.52235 3.66771 4.56266 4.79950 5.08534 5.27956 5.30037 5.45331 5.50193 5.71282 5.80482 5.91800 6.06305 6.13281 6.17864 6.20747 6.29913 6.31052 6.34340 6.37620 6.44204 6.53645 6.61202 6.67008 6.74081 6.79708 6.93012 7.08247 7.15613 7.30292 7.36127 7.57677 7.60817 7.63870 7.88252 8.16416 8.32011 8.52162 8.74044 9.02167 9.75626 11.12570 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021125 B = 0.011079 C = 0.009581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.095432 B = 2526.793847 C = 2921.625104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.128 4.128 3 C 0.198 3.802 4 H 0.004 0.996 5 C -0.555 4.555 6 H 0.063 0.937 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 1.061 2.939 10 H -0.291 1.291 11 H -0.288 1.288 12 H -0.288 1.288 13 N -0.495 5.495 14 C 0.019 3.981 15 C 0.126 3.874 16 C 0.080 3.920 17 N -0.830 5.830 18 C -0.153 4.153 19 C -0.120 4.120 20 C -0.117 4.117 21 C -0.143 4.143 22 H 0.016 0.984 23 H 0.068 0.932 24 H 0.049 0.951 25 H 0.025 0.975 26 H 0.060 0.940 27 H 0.269 0.731 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.005 0.995 31 H 0.015 0.985 32 H 0.063 0.937 33 H 0.341 0.659 34 H 0.325 0.675 35 H 0.073 0.927 36 H 0.049 0.951 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.048 0.952 40 H 0.072 0.928 41 H 0.035 0.965 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.655 4.857 -8.672 9.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.167 4.167 3 C 0.092 3.908 4 H 0.021 0.979 5 C -0.593 4.593 6 H 0.081 0.919 7 C -0.187 4.187 8 N -0.554 5.554 9 Si 0.890 3.110 10 H -0.218 1.218 11 H -0.214 1.214 12 H -0.214 1.214 13 N -0.218 5.218 14 C -0.129 4.129 15 C 0.035 3.965 16 C -0.051 4.051 17 N -0.360 5.360 18 C -0.193 4.193 19 C -0.158 4.158 20 C -0.155 4.155 21 C -0.180 4.180 22 H 0.036 0.964 23 H 0.087 0.913 24 H 0.068 0.932 25 H 0.044 0.956 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.023 0.977 31 H 0.033 0.967 32 H 0.081 0.919 33 H 0.156 0.844 34 H 0.136 0.864 35 H 0.091 0.909 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.091 0.909 41 H 0.053 0.947 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.154 4.365 -6.815 8.095 hybrid contribution 1.554 0.408 -2.120 2.660 sum 1.400 4.773 -8.935 10.226 Atomic orbital electron populations 1.21636 0.96277 0.97932 1.02510 1.21876 0.96614 0.99158 0.99022 1.19542 0.94018 0.90004 0.87279 0.97851 1.21772 1.29953 1.16804 0.90777 0.91942 1.25610 0.96126 0.97182 0.99752 1.70766 1.24249 1.24685 1.35716 0.83652 0.75812 0.75708 0.75789 1.21762 1.21362 1.21363 1.62199 1.48027 1.09365 1.02221 1.22539 0.99124 0.96137 0.95094 1.21512 0.88402 0.92888 0.93696 1.21859 0.89152 0.96639 0.97452 1.58513 1.27576 1.41322 1.08548 1.23078 0.97228 0.99685 0.99289 1.22419 0.97834 0.97736 0.97799 1.22277 0.95794 0.99865 0.97579 1.22911 0.98194 0.95846 1.01073 0.96442 0.91348 0.93239 0.95610 0.92098 0.91887 0.91220 0.93167 0.97699 0.96705 0.91858 0.84439 0.86407 0.90884 0.93198 0.92816 0.92764 0.93318 0.90944 0.94652 0.83933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.13 37.16 0.34 -2.40 16 2 C -0.13 -2.92 4.84 -26.73 -0.13 -3.05 16 3 C 0.20 4.63 1.07 -68.86 -0.07 4.55 16 4 H 0.00 0.11 5.23 -51.93 -0.27 -0.17 16 5 C -0.55 -14.12 4.67 -34.44 -0.16 -14.28 16 6 H 0.06 1.66 6.64 -52.49 -0.35 1.31 16 7 C 0.02 0.45 5.27 -17.82 -0.09 0.36 16 8 N -0.92 -26.16 13.18 55.43 0.73 -25.43 16 9 Si 1.06 24.53 29.91 -169.99 -5.08 19.45 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 13 N -0.50 -10.18 4.15 -219.32 -0.91 -11.09 16 14 C 0.02 0.36 7.42 60.06 0.45 0.81 16 15 C 0.13 2.32 0.36 -130.48 -0.05 2.27 16 16 C 0.08 1.28 5.23 -3.83 -0.02 1.26 16 17 N -0.83 -12.68 9.51 -10.37 -0.10 -12.78 16 18 C -0.15 -2.73 4.57 -25.04 -0.11 -2.85 16 19 C -0.12 -1.99 6.91 -24.70 -0.17 -2.16 16 20 C -0.12 -2.18 6.83 -25.07 -0.17 -2.35 16 21 C -0.14 -2.77 5.11 -25.61 -0.13 -2.90 16 22 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 23 H 0.07 1.62 6.92 -51.93 -0.36 1.27 16 24 H 0.05 1.03 5.97 -51.93 -0.31 0.72 16 25 H 0.03 0.54 6.02 -51.93 -0.31 0.23 16 26 H 0.06 1.53 6.15 -51.93 -0.32 1.21 16 27 H 0.27 7.70 5.63 -40.82 -0.23 7.47 16 28 H 0.07 1.32 4.72 -51.93 -0.24 1.08 16 29 H 0.05 0.87 5.83 -51.93 -0.30 0.56 16 30 H 0.00 0.09 6.84 -51.92 -0.36 -0.27 16 31 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 1.00 6.12 -51.93 -0.32 0.68 16 33 H 0.34 5.25 7.11 -39.29 -0.28 4.97 16 34 H 0.32 4.05 9.08 -39.29 -0.36 3.69 16 35 H 0.07 1.48 5.73 -51.93 -0.30 1.19 16 36 H 0.05 0.81 7.84 -51.93 -0.41 0.40 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 41 H 0.03 0.61 6.39 -51.93 -0.33 0.28 16 42 H 0.14 3.26 3.44 -51.93 -0.18 3.08 16 LS Contribution 294.01 15.07 4.43 4.43 Total: -1.00 -27.11 294.01 -7.81 -34.92 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -6.56 Total: 11.23 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: -0.33 Total: -20.74 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: -0.28 Total: -49.29 kcal Atomic # 14 Polarization: 24.53 SS G_CDS: -5.08 Total: 19.45 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.11 -7.81 -34.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725007445.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.521 kcal (2) G-P(sol) polarization free energy of solvation -27.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds