Wall clock time and date at job start Mon Mar 30 2020 03:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46701 * 2 1 4 4 H 1.09005 * 109.46637 * 174.71322 * 3 2 1 5 5 C 1.50703 * 109.47120 * 54.72203 * 3 2 1 6 6 H 1.07997 * 119.99941 * 244.86532 * 5 3 2 7 7 C 1.37877 * 120.00203 * 64.85620 * 5 3 2 8 8 N 1.31513 * 119.99987 * 6.23397 * 7 5 3 9 9 Si 1.86805 * 120.00181 * 186.22449 * 7 5 3 10 10 H 1.48499 * 109.47176 * 270.00606 * 9 7 5 11 11 H 1.48503 * 109.46549 * 30.00497 * 9 7 5 12 12 H 1.48498 * 109.46773 * 150.00240 * 9 7 5 13 13 N 1.46897 * 109.47393 * 294.72010 * 3 2 1 14 14 C 1.46896 * 110.99935 * 329.86584 * 13 3 2 15 15 C 1.46902 * 110.99769 * 205.91579 * 13 3 2 16 16 C 1.52997 * 110.01776 * 183.22260 * 15 13 3 17 17 N 1.46900 * 109.47147 * 62.61350 * 16 15 13 18 18 C 1.54265 * 110.03479 * 61.82463 * 15 13 3 19 19 C 1.54957 * 104.16396 * 217.13671 * 18 15 13 20 20 C 1.54896 * 102.77836 * 37.88880 * 19 18 15 21 21 C 1.53874 * 110.03076 * 304.61042 * 15 13 3 22 22 H 1.09006 * 109.46922 * 183.80100 * 1 2 3 23 23 H 1.09000 * 109.47157 * 303.79979 * 1 2 3 24 24 H 1.09002 * 109.47442 * 63.80175 * 1 2 3 25 25 H 1.08995 * 109.46832 * 240.00606 * 2 1 3 26 26 H 1.08998 * 109.47231 * 120.00276 * 2 1 3 27 27 H 0.96999 * 120.00029 * 355.35124 * 8 7 5 28 28 H 1.08995 * 109.47194 * 65.15440 * 14 13 3 29 29 H 1.09000 * 109.47162 * 185.16289 * 14 13 3 30 30 H 1.09007 * 109.47347 * 305.15686 * 14 13 3 31 31 H 1.09000 * 109.47092 * 182.61955 * 16 15 13 32 32 H 1.08996 * 109.46798 * 302.61753 * 16 15 13 33 33 H 1.00906 * 110.99691 * 56.05285 * 17 16 15 34 34 H 1.00907 * 110.99942 * 179.97438 * 17 16 15 35 35 H 1.08993 * 110.48551 * 335.78953 * 18 15 13 36 36 H 1.09004 * 110.48147 * 98.42690 * 18 15 13 37 37 H 1.09004 * 110.72455 * 279.57836 * 19 18 15 38 38 H 1.09001 * 110.92666 * 156.30060 * 19 18 15 39 39 H 1.08998 * 110.48777 * 203.40399 * 20 19 18 40 40 H 1.08998 * 110.47982 * 80.76248 * 20 19 18 41 41 H 1.08999 * 110.03414 * 238.57058 * 21 15 13 42 42 H 1.08997 * 110.03522 * 0.02562 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1258 1.4440 0.0947 5 6 1.4336 2.1897 1.1599 6 1 0.7616 3.0154 0.9784 7 6 1.7367 1.8190 2.4529 8 7 2.6469 0.8963 2.6762 9 14 0.8548 2.6274 3.8875 10 1 1.6109 3.8304 4.3190 11 1 -0.5123 3.0266 3.4665 12 1 0.7645 1.6678 5.0172 13 7 1.6571 2.0973 -1.2580 14 6 1.5809 1.1243 -2.3559 15 6 2.5829 3.1897 -1.5859 16 6 2.1187 3.9064 -2.8554 17 7 0.8016 4.5135 -2.6211 18 6 4.0079 2.6330 -1.7844 19 6 4.9284 3.7226 -1.1788 20 6 4.1265 4.2002 0.0573 21 6 2.6582 4.1860 -0.4157 22 1 -0.3633 -1.0255 0.0681 23 1 -0.3633 0.5717 0.8540 24 1 -0.3634 0.4537 -0.9221 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 3.0564 0.4288 1.9315 28 1 0.7748 0.4175 -2.1598 29 1 1.3859 1.6474 -3.2921 30 1 2.5259 0.5860 -2.4306 31 1 2.8361 4.6844 -3.1164 32 1 2.0476 3.1886 -3.6725 33 1 0.8262 5.1351 -1.8266 34 1 0.4730 4.9938 -3.4454 35 1 4.1277 1.6916 -1.2485 36 1 4.2207 2.4990 -2.8450 37 1 5.0737 4.5406 -1.8845 38 1 5.8867 3.2994 -0.8778 39 1 4.4265 5.2092 0.3402 40 1 4.2654 3.5121 0.8912 41 1 2.3648 5.1803 -0.7523 42 1 2.0081 3.8587 0.3957 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725007445.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:11 Heat of formation + Delta-G solvation = -3.631433 kcal Electronic energy + Delta-G solvation = -19700.534187 eV Core-core repulsion = 17100.988553 eV Total energy + Delta-G solvation = -2599.545634 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.09094 -37.38003 -35.09092 -34.27675 -32.28284 -30.03214 -28.66368 -28.30645 -25.85812 -24.91038 -24.25001 -21.60399 -21.25173 -19.39299 -18.48242 -17.29062 -16.70702 -16.39314 -15.68034 -15.60853 -15.50565 -14.88304 -14.69957 -14.27108 -13.98330 -13.74614 -13.38484 -13.20227 -13.10984 -12.63044 -12.50120 -12.36099 -11.96423 -11.93074 -11.88440 -11.75422 -11.65709 -11.51349 -11.32124 -11.24462 -10.84546 -10.36923 -10.26955 -9.29545 -8.62631 -8.27270 -5.97809 1.57560 1.65013 1.81158 2.65545 3.30649 3.40999 3.70117 3.87433 3.95105 4.14715 4.34636 4.47730 4.49110 4.51622 4.55898 4.63429 4.64317 4.72123 4.76419 4.80235 4.89879 4.93301 5.04199 5.08585 5.13582 5.16947 5.22755 5.31604 5.40463 5.47787 5.54061 5.55757 5.76899 5.96614 6.22883 6.35128 6.42688 6.73610 6.82265 6.85755 7.02955 7.70912 9.00776 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021125 B = 0.011079 C = 0.009581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.095432 B = 2526.793847 C = 2921.625104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.125 4.125 3 C 0.207 3.793 4 H -0.025 1.025 5 C -0.535 4.535 6 H 0.051 0.949 7 C -0.030 4.030 8 N -0.948 5.948 9 Si 1.098 2.902 10 H -0.281 1.281 11 H -0.273 1.273 12 H -0.294 1.294 13 N -0.502 5.502 14 C 0.022 3.978 15 C 0.121 3.879 16 C 0.088 3.912 17 N -0.841 5.841 18 C -0.151 4.151 19 C -0.111 4.111 20 C -0.117 4.117 21 C -0.142 4.142 22 H 0.037 0.963 23 H 0.042 0.958 24 H 0.059 0.941 25 H 0.041 0.959 26 H 0.031 0.969 27 H 0.257 0.743 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.003 0.997 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.340 0.660 34 H 0.343 0.657 35 H 0.039 0.961 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.027 0.973 41 H 0.057 0.943 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.199 6.265 -10.736 12.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.163 4.163 3 C 0.099 3.901 4 H -0.008 1.008 5 C -0.573 4.573 6 H 0.069 0.931 7 C -0.227 4.227 8 N -0.587 5.587 9 Si 0.923 3.077 10 H -0.208 1.208 11 H -0.198 1.198 12 H -0.220 1.220 13 N -0.225 5.225 14 C -0.126 4.126 15 C 0.031 3.969 16 C -0.043 4.043 17 N -0.372 5.372 18 C -0.190 4.190 19 C -0.149 4.149 20 C -0.155 4.155 21 C -0.180 4.180 22 H 0.056 0.944 23 H 0.061 0.939 24 H 0.078 0.922 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.021 0.979 31 H 0.052 0.948 32 H 0.088 0.912 33 H 0.154 0.846 34 H 0.156 0.844 35 H 0.058 0.942 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.046 0.954 41 H 0.076 0.924 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.623 5.791 -8.913 10.647 hybrid contribution 1.695 0.002 -1.546 2.294 sum 1.072 5.793 -10.458 12.004 Atomic orbital electron populations 1.21503 0.95054 0.98884 1.01770 1.21797 0.97548 0.98657 0.98320 1.19284 0.92029 0.90334 0.88412 1.00775 1.21874 1.28279 1.15744 0.91432 0.93099 1.26635 0.96350 0.97360 1.02395 1.70867 1.26232 1.26495 1.35153 0.83156 0.75789 0.75193 0.73524 1.20764 1.19824 1.22039 1.62141 1.48737 1.09943 1.01686 1.22544 0.98919 0.95966 0.95201 1.21647 0.88458 0.92107 0.94730 1.21752 0.89888 0.97036 0.95659 1.58463 1.27374 1.41870 1.09530 1.23015 0.97318 0.98506 1.00202 1.22391 0.97254 0.98114 0.97102 1.22208 0.96207 0.99888 0.97173 1.22765 0.97635 0.97253 1.00301 0.94427 0.93930 0.92181 0.93998 0.95025 0.93235 0.91519 0.91048 0.97851 0.94755 0.91238 0.84596 0.84384 0.94204 0.90947 0.89819 0.92475 0.91339 0.95385 0.92414 0.87683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.91 9.13 71.98 0.66 -4.26 16 2 C -0.12 -5.76 4.84 30.60 0.15 -5.62 16 3 C 0.21 9.85 1.07 44.17 0.05 9.90 16 4 H -0.03 -1.34 5.23 -2.38 -0.01 -1.35 16 5 C -0.53 -27.86 4.67 25.60 0.12 -27.75 16 6 H 0.05 2.75 6.64 -2.91 -0.02 2.73 16 7 C -0.03 -1.63 5.27 84.65 0.45 -1.19 16 8 N -0.95 -56.33 13.18 21.45 0.28 -56.05 16 9 Si 1.10 50.39 29.91 68.60 2.05 52.44 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 12 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 13 N -0.50 -20.18 4.15 -847.81 -3.52 -23.69 16 14 C 0.02 0.77 7.42 127.69 0.95 1.72 16 15 C 0.12 4.25 0.36 4.25 0.00 4.25 16 16 C 0.09 2.47 5.23 86.30 0.45 2.92 16 17 N -0.84 -22.98 9.51 -186.73 -1.77 -24.76 16 18 C -0.15 -5.15 4.57 31.69 0.14 -5.01 16 19 C -0.11 -3.46 6.91 31.91 0.22 -3.24 16 20 C -0.12 -4.29 6.83 31.67 0.22 -4.07 16 21 C -0.14 -5.35 5.11 31.32 0.16 -5.19 16 22 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 23 H 0.04 2.02 6.92 -2.39 -0.02 2.00 16 24 H 0.06 2.42 5.97 -2.39 -0.01 2.40 16 25 H 0.04 1.77 6.02 -2.39 -0.01 1.75 16 26 H 0.03 1.63 6.15 -2.39 -0.01 1.62 16 27 H 0.26 15.51 5.63 -92.71 -0.52 14.98 16 28 H 0.07 2.39 4.72 -2.39 -0.01 2.38 16 29 H 0.07 2.23 5.83 -2.39 -0.01 2.22 16 30 H 0.00 0.11 6.84 -2.38 -0.02 0.09 16 31 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 1.89 6.12 -2.39 -0.01 1.88 16 33 H 0.34 9.52 7.11 -89.69 -0.64 8.88 16 34 H 0.34 7.30 9.08 -89.69 -0.81 6.48 16 35 H 0.04 1.63 5.73 -2.39 -0.01 1.62 16 36 H 0.07 2.13 7.84 -2.38 -0.02 2.11 16 37 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 38 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.06 1.88 6.39 -2.39 -0.02 1.86 16 42 H 0.11 4.84 3.44 -2.39 -0.01 4.83 16 Total: -1.00 -59.79 294.01 0.43 -59.36 By element: Atomic # 1 Polarization: 30.40 SS G_CDS: -0.17 Total: 30.22 kcal Atomic # 6 Polarization: -41.09 SS G_CDS: 3.56 Total: -37.53 kcal Atomic # 7 Polarization: -99.49 SS G_CDS: -5.01 Total: -104.50 kcal Atomic # 14 Polarization: 50.39 SS G_CDS: 2.05 Total: 52.44 kcal Total: -59.79 0.43 -59.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725007445.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.732 kcal (2) G-P(sol) polarization free energy of solvation -59.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds