Wall clock time and date at job start Mon Mar 30 2020 03:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47442 * 2 1 4 4 H 1.09004 * 109.46632 * 55.99999 * 3 2 1 5 5 C 1.50693 * 109.47255 * 175.99759 * 3 2 1 6 6 H 1.08000 * 120.00254 * 114.46623 * 5 3 2 7 7 C 1.37881 * 120.00070 * 294.46522 * 5 3 2 8 8 N 1.31519 * 119.99722 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 120.00209 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.46833 * 89.99920 * 9 7 5 11 11 H 1.48493 * 109.47022 * 210.00118 * 9 7 5 12 12 H 1.48499 * 109.46647 * 330.00178 * 9 7 5 13 13 N 1.46900 * 109.47390 * 296.00173 * 3 2 1 14 14 C 1.46900 * 110.99874 * 278.23961 * 13 3 2 15 15 C 1.46897 * 111.00281 * 154.28052 * 13 3 2 16 16 C 1.52997 * 110.01845 * 185.81387 * 15 13 3 17 17 N 1.46898 * 109.47239 * 60.61180 * 16 15 13 18 18 C 1.54271 * 110.02933 * 64.42429 * 15 13 3 19 19 C 1.54962 * 104.15919 * 217.13583 * 18 15 13 20 20 C 1.54893 * 102.77843 * 37.89070 * 19 18 15 21 21 C 1.53872 * 110.03240 * 307.20735 * 15 13 3 22 22 H 1.09005 * 109.46856 * 55.18356 * 1 2 3 23 23 H 1.09003 * 109.47262 * 175.18412 * 1 2 3 24 24 H 1.08994 * 109.47149 * 295.18604 * 1 2 3 25 25 H 1.09001 * 109.46887 * 120.00267 * 2 1 3 26 26 H 1.09007 * 109.47206 * 239.99756 * 2 1 3 27 27 H 0.97003 * 119.99805 * 180.02562 * 8 7 5 28 28 H 1.08998 * 109.47229 * 52.17360 * 14 13 3 29 29 H 1.08994 * 109.47004 * 172.17691 * 14 13 3 30 30 H 1.09004 * 109.46778 * 292.17950 * 14 13 3 31 31 H 1.08994 * 109.47354 * 180.61548 * 16 15 13 32 32 H 1.09002 * 109.47101 * 300.61180 * 16 15 13 33 33 H 1.00895 * 111.00225 * 184.61410 * 17 16 15 34 34 H 1.00905 * 111.00081 * 308.57446 * 17 16 15 35 35 H 1.09001 * 110.48900 * 335.77907 * 18 15 13 36 36 H 1.09000 * 110.48687 * 98.42559 * 18 15 13 37 37 H 1.08996 * 110.72206 * 279.57386 * 19 18 15 38 38 H 1.08997 * 110.76724 * 156.22306 * 19 18 15 39 39 H 1.09005 * 110.48871 * 203.40980 * 20 19 18 40 40 H 1.08995 * 110.48804 * 80.75824 * 20 19 18 41 41 H 1.08997 * 110.03202 * 238.56683 * 21 15 13 42 42 H 1.09003 * 110.03613 * 359.97438 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6194 1.9765 0.8520 5 6 3.5437 1.4435 0.0992 6 1 4.1389 1.8114 -0.7235 7 6 4.1597 0.9750 1.2403 8 7 5.4721 0.9764 1.3269 9 14 3.1304 0.3394 2.6636 10 1 2.8942 -1.1167 2.4922 11 1 3.8506 0.5772 3.9402 12 1 1.8281 1.0524 2.6896 13 7 1.6309 2.1066 -1.2448 14 6 2.5455 1.7727 -2.3448 15 6 1.5386 3.5609 -1.0598 16 6 0.9737 4.2146 -2.3225 17 7 -0.3715 3.6872 -2.5872 18 6 2.9315 4.1426 -0.7415 19 6 2.6479 5.2608 0.2932 20 6 1.5185 4.6486 1.1584 21 6 0.6403 3.8827 0.1473 22 1 -0.3633 0.5868 -0.8437 23 1 -0.3634 -1.0241 -0.0863 24 1 -0.3633 0.4373 0.9299 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 5.9055 0.6464 2.1296 28 1 2.6487 0.6900 -2.4157 29 1 2.1451 2.1617 -3.2809 30 1 3.5216 2.2189 -2.1537 31 1 0.9193 5.2938 -2.1797 32 1 1.6240 3.9925 -3.1686 33 1 -0.7363 4.0467 -3.4565 34 1 -0.3712 2.6782 -2.5848 35 1 3.5749 3.3767 -0.3083 36 1 3.3853 4.5597 -1.6405 37 1 2.3050 6.1682 -0.2039 38 1 3.5323 5.4611 0.8979 39 1 0.9419 5.4351 1.6454 40 1 1.9332 3.9643 1.8985 41 1 -0.1976 4.5054 -0.1663 42 1 0.2724 2.9598 0.5957 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725007448.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:14 Heat of formation + Delta-G solvation = 9.423349 kcal Electronic energy + Delta-G solvation = -19733.974834 eV Core-core repulsion = 17134.995298 eV Total energy + Delta-G solvation = -2598.979537 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.54491 -35.33266 -33.69243 -32.15523 -31.61474 -28.18614 -27.69513 -26.94012 -24.60507 -23.05621 -22.12399 -20.01705 -19.85386 -17.51889 -16.92086 -15.81675 -15.38847 -14.96538 -14.49205 -13.91933 -13.61675 -13.32694 -13.05017 -12.62871 -12.45364 -12.17038 -11.93751 -11.87223 -11.44767 -11.22163 -10.92068 -10.73105 -10.48950 -10.44085 -10.32215 -10.19761 -10.11019 -9.84058 -9.78804 -9.54767 -9.43797 -8.86596 -8.51555 -8.22605 -7.08399 -6.12798 -4.10061 3.25653 3.36583 3.38432 4.37347 4.83148 5.04815 5.17154 5.36425 5.42119 5.60971 5.78866 5.85470 6.03272 6.07236 6.09377 6.18461 6.25131 6.31229 6.32805 6.35437 6.51469 6.55484 6.56988 6.60470 6.70869 6.73863 6.79366 6.90178 6.94690 6.99318 7.06254 7.22529 7.32550 7.43949 7.55239 7.67791 7.90881 8.16179 8.24382 8.48975 8.88093 9.50593 10.98119 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022437 B = 0.011633 C = 0.010156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.613740 B = 2406.321119 C = 2756.412272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C 0.172 3.828 4 H 0.050 0.950 5 C -0.541 4.541 6 H 0.089 0.911 7 C 0.076 3.924 8 N -0.896 5.896 9 Si 0.876 3.124 10 H -0.278 1.278 11 H -0.297 1.297 12 H -0.262 1.262 13 N -0.519 5.519 14 C 0.033 3.967 15 C 0.119 3.881 16 C 0.081 3.919 17 N -0.844 5.844 18 C -0.180 4.180 19 C -0.115 4.115 20 C -0.125 4.125 21 C -0.103 4.103 22 H 0.064 0.936 23 H 0.031 0.969 24 H 0.037 0.963 25 H 0.044 0.956 26 H 0.054 0.946 27 H 0.263 0.737 28 H 0.060 0.940 29 H 0.034 0.966 30 H 0.041 0.959 31 H 0.062 0.938 32 H 0.019 0.981 33 H 0.325 0.675 34 H 0.352 0.648 35 H 0.138 0.862 36 H 0.042 0.958 37 H 0.049 0.951 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.480 4.541 -4.496 10.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C 0.065 3.935 4 H 0.067 0.933 5 C -0.578 4.578 6 H 0.107 0.893 7 C -0.127 4.127 8 N -0.534 5.534 9 Si 0.706 3.294 10 H -0.205 1.205 11 H -0.224 1.224 12 H -0.186 1.186 13 N -0.242 5.242 14 C -0.116 4.116 15 C 0.029 3.971 16 C -0.050 4.050 17 N -0.374 5.374 18 C -0.218 4.218 19 C -0.153 4.153 20 C -0.163 4.163 21 C -0.141 4.141 22 H 0.083 0.917 23 H 0.050 0.950 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.038 0.962 33 H 0.136 0.864 34 H 0.166 0.834 35 H 0.155 0.845 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.014 4.679 -3.837 10.857 hybrid contribution 0.971 -0.554 0.186 1.134 sum -8.043 4.126 -3.650 9.748 Atomic orbital electron populations 1.21751 0.97651 0.99370 1.01367 1.21816 0.93733 0.99514 1.00262 1.19846 0.94435 0.90463 0.88788 0.93277 1.21706 0.90705 1.42193 1.03233 0.89307 1.24959 0.94593 0.94905 0.98196 1.69909 1.08330 1.46600 1.28528 0.86977 0.80980 0.79610 0.81855 1.20489 1.22444 1.18639 1.62406 1.48508 1.06219 1.07062 1.22252 0.95858 1.00914 0.92540 1.21537 0.93693 0.88321 0.93566 1.21840 0.88865 0.98168 0.96165 1.58689 1.23949 1.15040 1.39700 1.23789 0.99363 1.00520 0.98177 1.22328 0.97918 0.97380 0.97668 1.22369 0.96879 0.98845 0.98164 1.22130 0.97307 1.00254 0.94400 0.91653 0.95024 0.94376 0.93788 0.92745 0.92696 0.92155 0.94761 0.94059 0.92003 0.96237 0.86417 0.83352 0.84495 0.93964 0.93257 0.92471 0.93030 0.91687 0.91551 0.91063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.85 37.16 0.37 -2.22 16 2 C -0.12 -2.43 5.08 -26.73 -0.14 -2.56 16 3 C 0.17 3.76 0.76 -68.87 -0.05 3.71 16 4 H 0.05 1.14 3.68 -51.93 -0.19 0.95 16 5 C -0.54 -13.74 5.98 -34.44 -0.21 -13.95 16 6 H 0.09 2.43 4.74 -52.49 -0.25 2.19 16 7 C 0.08 2.08 5.45 -17.82 -0.10 1.98 16 8 N -0.90 -26.15 13.96 55.43 0.77 -25.37 16 9 Si 0.88 21.30 24.69 -169.99 -4.20 17.10 16 10 H -0.28 -6.71 6.86 56.52 0.39 -6.32 16 11 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 12 H -0.26 -6.13 6.38 56.52 0.36 -5.76 16 13 N -0.52 -9.80 3.05 -219.33 -0.67 -10.47 16 14 C 0.03 0.62 7.96 60.06 0.48 1.09 16 15 C 0.12 2.11 0.36 -130.49 -0.05 2.06 16 16 C 0.08 1.24 5.15 -3.83 -0.02 1.22 16 17 N -0.84 -11.75 9.06 -10.37 -0.09 -11.84 16 18 C -0.18 -3.44 4.49 -25.03 -0.11 -3.56 16 19 C -0.11 -1.99 6.91 -24.70 -0.17 -2.16 16 20 C -0.12 -2.19 6.66 -25.07 -0.17 -2.35 16 21 C -0.10 -1.82 5.13 -25.61 -0.13 -1.96 16 22 H 0.06 1.13 7.59 -51.93 -0.39 0.74 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.04 1.00 4.01 -51.93 -0.21 0.79 16 26 H 0.05 1.14 7.07 -51.92 -0.37 0.78 16 27 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.06 1.17 7.01 -51.93 -0.36 0.81 16 29 H 0.03 0.56 6.59 -51.93 -0.34 0.22 16 30 H 0.04 0.86 4.96 -51.93 -0.26 0.60 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.02 0.30 6.55 -51.93 -0.34 -0.04 16 33 H 0.33 3.76 9.08 -39.29 -0.36 3.40 16 34 H 0.35 5.17 8.24 -39.29 -0.32 4.84 16 35 H 0.14 3.18 3.67 -51.93 -0.19 2.99 16 36 H 0.04 0.77 7.84 -51.93 -0.41 0.36 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 1.27 7.82 -51.93 -0.41 0.86 16 41 H 0.07 1.12 7.40 -51.93 -0.38 0.73 16 42 H 0.07 1.37 6.15 -51.93 -0.32 1.05 16 LS Contribution 294.44 15.07 4.44 4.44 Total: -1.00 -26.59 294.44 -6.87 -33.46 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -6.83 Total: 11.38 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -0.30 Total: -18.69 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 0.01 Total: -47.68 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.20 Total: 17.10 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -26.59 -6.87 -33.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725007448.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.883 kcal (2) G-P(sol) polarization free energy of solvation -26.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds