Wall clock time and date at job start Mon Mar 30 2020 03:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47442 * 2 1 4 4 H 1.09004 * 109.46632 * 55.99999 * 3 2 1 5 5 C 1.50693 * 109.47255 * 175.99759 * 3 2 1 6 6 H 1.08000 * 120.00254 * 114.46623 * 5 3 2 7 7 C 1.37881 * 120.00070 * 294.46522 * 5 3 2 8 8 N 1.31519 * 119.99722 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 120.00209 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.46833 * 89.99920 * 9 7 5 11 11 H 1.48493 * 109.47022 * 210.00118 * 9 7 5 12 12 H 1.48499 * 109.46647 * 330.00178 * 9 7 5 13 13 N 1.46900 * 109.47390 * 296.00173 * 3 2 1 14 14 C 1.46900 * 110.99874 * 278.23961 * 13 3 2 15 15 C 1.46897 * 111.00281 * 154.28052 * 13 3 2 16 16 C 1.52997 * 110.01845 * 185.81387 * 15 13 3 17 17 N 1.46898 * 109.47239 * 60.61180 * 16 15 13 18 18 C 1.54271 * 110.02933 * 64.42429 * 15 13 3 19 19 C 1.54962 * 104.15919 * 217.13583 * 18 15 13 20 20 C 1.54893 * 102.77843 * 37.89070 * 19 18 15 21 21 C 1.53872 * 110.03240 * 307.20735 * 15 13 3 22 22 H 1.09005 * 109.46856 * 55.18356 * 1 2 3 23 23 H 1.09003 * 109.47262 * 175.18412 * 1 2 3 24 24 H 1.08994 * 109.47149 * 295.18604 * 1 2 3 25 25 H 1.09001 * 109.46887 * 120.00267 * 2 1 3 26 26 H 1.09007 * 109.47206 * 239.99756 * 2 1 3 27 27 H 0.97003 * 119.99805 * 180.02562 * 8 7 5 28 28 H 1.08998 * 109.47229 * 52.17360 * 14 13 3 29 29 H 1.08994 * 109.47004 * 172.17691 * 14 13 3 30 30 H 1.09004 * 109.46778 * 292.17950 * 14 13 3 31 31 H 1.08994 * 109.47354 * 180.61548 * 16 15 13 32 32 H 1.09002 * 109.47101 * 300.61180 * 16 15 13 33 33 H 1.00895 * 111.00225 * 184.61410 * 17 16 15 34 34 H 1.00905 * 111.00081 * 308.57446 * 17 16 15 35 35 H 1.09001 * 110.48900 * 335.77907 * 18 15 13 36 36 H 1.09000 * 110.48687 * 98.42559 * 18 15 13 37 37 H 1.08996 * 110.72206 * 279.57386 * 19 18 15 38 38 H 1.08997 * 110.76724 * 156.22306 * 19 18 15 39 39 H 1.09005 * 110.48871 * 203.40980 * 20 19 18 40 40 H 1.08995 * 110.48804 * 80.75824 * 20 19 18 41 41 H 1.08997 * 110.03202 * 238.56683 * 21 15 13 42 42 H 1.09003 * 110.03613 * 359.97438 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6194 1.9765 0.8520 5 6 3.5437 1.4435 0.0992 6 1 4.1389 1.8114 -0.7235 7 6 4.1597 0.9750 1.2403 8 7 5.4721 0.9764 1.3269 9 14 3.1304 0.3394 2.6636 10 1 2.8942 -1.1167 2.4922 11 1 3.8506 0.5772 3.9402 12 1 1.8281 1.0524 2.6896 13 7 1.6309 2.1066 -1.2448 14 6 2.5455 1.7727 -2.3448 15 6 1.5386 3.5609 -1.0598 16 6 0.9737 4.2146 -2.3225 17 7 -0.3715 3.6872 -2.5872 18 6 2.9315 4.1426 -0.7415 19 6 2.6479 5.2608 0.2932 20 6 1.5185 4.6486 1.1584 21 6 0.6403 3.8827 0.1473 22 1 -0.3633 0.5868 -0.8437 23 1 -0.3634 -1.0241 -0.0863 24 1 -0.3633 0.4373 0.9299 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 5.9055 0.6464 2.1296 28 1 2.6487 0.6900 -2.4157 29 1 2.1451 2.1617 -3.2809 30 1 3.5216 2.2189 -2.1537 31 1 0.9193 5.2938 -2.1797 32 1 1.6240 3.9925 -3.1686 33 1 -0.7363 4.0467 -3.4565 34 1 -0.3712 2.6782 -2.5848 35 1 3.5749 3.3767 -0.3083 36 1 3.3853 4.5597 -1.6405 37 1 2.3050 6.1682 -0.2039 38 1 3.5323 5.4611 0.8979 39 1 0.9419 5.4351 1.6454 40 1 1.9332 3.9643 1.8985 41 1 -0.1976 4.5054 -0.1663 42 1 0.2724 2.9598 0.5957 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725007448.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:14 Heat of formation + Delta-G solvation = -8.877659 kcal Electronic energy + Delta-G solvation = -19734.768426 eV Core-core repulsion = 17134.995298 eV Total energy + Delta-G solvation = -2599.773128 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.06913 -36.95820 -35.01580 -34.09007 -33.14562 -29.66535 -29.28019 -28.57302 -26.20772 -24.51091 -23.73488 -21.63928 -21.35798 -19.07970 -18.84844 -17.35770 -16.76151 -16.64136 -16.00613 -15.47558 -15.11975 -14.86908 -14.55170 -14.26378 -14.05803 -13.66748 -13.60974 -13.52465 -13.00445 -12.75794 -12.57680 -12.41669 -12.14249 -11.88903 -11.86095 -11.78204 -11.61901 -11.45793 -11.28909 -11.25878 -11.16763 -10.71357 -10.49913 -9.35151 -8.73406 -8.24012 -6.20935 1.29487 1.35186 1.42889 2.34284 3.09971 3.32347 3.72804 3.99610 4.06903 4.22437 4.43851 4.44956 4.48859 4.55473 4.69250 4.74345 4.75898 4.80664 4.91670 4.93966 4.97955 5.04834 5.12292 5.17473 5.17819 5.20652 5.30008 5.34846 5.39289 5.44946 5.54284 5.63123 5.68270 5.71419 5.86863 6.29216 6.44328 6.48850 6.72996 6.83978 6.87789 7.42027 8.90149 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022437 B = 0.011633 C = 0.010156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.613740 B = 2406.321119 C = 2756.412272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.117 4.117 3 C 0.179 3.821 4 H 0.042 0.958 5 C -0.517 4.517 6 H 0.062 0.938 7 C 0.022 3.978 8 N -0.946 5.946 9 Si 0.924 3.076 10 H -0.273 1.273 11 H -0.305 1.305 12 H -0.247 1.247 13 N -0.506 5.506 14 C 0.040 3.960 15 C 0.117 3.883 16 C 0.090 3.910 17 N -0.842 5.842 18 C -0.181 4.181 19 C -0.111 4.111 20 C -0.125 4.125 21 C -0.097 4.097 22 H 0.074 0.926 23 H 0.052 0.948 24 H 0.038 0.962 25 H 0.027 0.973 26 H 0.050 0.950 27 H 0.260 0.740 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.014 0.986 31 H 0.073 0.927 32 H 0.019 0.981 33 H 0.342 0.658 34 H 0.349 0.651 35 H 0.093 0.907 36 H 0.046 0.954 37 H 0.077 0.923 38 H 0.046 0.954 39 H 0.078 0.922 40 H 0.036 0.964 41 H 0.082 0.918 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.345 5.412 -5.320 13.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.155 4.155 3 C 0.070 3.930 4 H 0.060 0.940 5 C -0.556 4.556 6 H 0.079 0.921 7 C -0.176 4.176 8 N -0.587 5.587 9 Si 0.752 3.248 10 H -0.199 1.199 11 H -0.233 1.233 12 H -0.171 1.171 13 N -0.228 5.228 14 C -0.109 4.109 15 C 0.027 3.973 16 C -0.042 4.042 17 N -0.373 5.373 18 C -0.220 4.220 19 C -0.149 4.149 20 C -0.163 4.163 21 C -0.135 4.135 22 H 0.093 0.907 23 H 0.071 0.929 24 H 0.057 0.943 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.033 0.967 31 H 0.091 0.909 32 H 0.037 0.963 33 H 0.155 0.845 34 H 0.163 0.837 35 H 0.111 0.889 36 H 0.065 0.935 37 H 0.096 0.904 38 H 0.065 0.935 39 H 0.097 0.903 40 H 0.055 0.945 41 H 0.101 0.899 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.916 5.558 -4.683 13.958 hybrid contribution 1.887 -0.755 0.339 2.061 sum -10.028 4.804 -4.345 11.938 Atomic orbital electron populations 1.21649 0.94702 1.00986 1.01789 1.21760 0.96350 0.98148 0.99288 1.19692 0.91688 0.91571 0.90034 0.94041 1.21984 0.92710 1.39233 1.01651 0.92070 1.25609 0.95241 0.96041 1.00711 1.70042 1.10029 1.49397 1.29237 0.86186 0.80165 0.79445 0.78958 1.19949 1.23286 1.17054 1.62447 1.47588 1.07142 1.05606 1.22182 0.94748 1.00223 0.93705 1.21661 0.92963 0.87365 0.95338 1.21693 0.89510 0.98470 0.94515 1.58635 1.22788 1.14845 1.41032 1.23607 0.99597 1.00115 0.98650 1.22324 0.97667 0.97772 0.97119 1.22366 0.97094 0.99085 0.97705 1.22085 0.97551 0.99811 0.94043 0.90739 0.92936 0.94313 0.95442 0.93117 0.93095 0.93124 0.91823 0.96709 0.90891 0.96250 0.84504 0.83661 0.88913 0.93506 0.90435 0.93512 0.90296 0.94532 0.89896 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.43 9.85 71.98 0.71 -3.72 16 2 C -0.12 -4.79 5.08 30.59 0.16 -4.64 16 3 C 0.18 7.72 0.76 44.17 0.03 7.75 16 4 H 0.04 1.90 3.68 -2.38 -0.01 1.89 16 5 C -0.52 -27.04 5.98 25.60 0.15 -26.89 16 6 H 0.06 3.52 4.74 -2.91 -0.01 3.51 16 7 C 0.02 1.21 5.45 84.65 0.46 1.67 16 8 N -0.95 -57.66 13.96 21.45 0.30 -57.36 16 9 Si 0.92 44.61 24.69 68.60 1.69 46.30 16 10 H -0.27 -12.85 6.86 99.48 0.68 -12.17 16 11 H -0.30 -14.98 7.11 99.48 0.71 -14.28 16 12 H -0.25 -11.15 6.38 99.48 0.64 -10.52 16 13 N -0.51 -18.41 3.05 -847.84 -2.58 -20.99 16 14 C 0.04 1.47 7.96 127.69 1.02 2.49 16 15 C 0.12 3.91 0.36 4.25 0.00 3.91 16 16 C 0.09 2.45 5.15 86.30 0.44 2.89 16 17 N -0.84 -20.15 9.06 -186.73 -1.69 -21.84 16 18 C -0.18 -6.83 4.49 31.70 0.14 -6.69 16 19 C -0.11 -3.69 6.91 31.91 0.22 -3.47 16 20 C -0.12 -4.14 6.66 31.67 0.21 -3.93 16 21 C -0.10 -3.19 5.13 31.32 0.16 -3.03 16 22 H 0.07 2.32 7.59 -2.38 -0.02 2.30 16 23 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.03 1.21 4.01 -2.39 -0.01 1.20 16 26 H 0.05 2.08 7.07 -2.38 -0.02 2.06 16 27 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 28 H 0.05 1.94 7.01 -2.39 -0.02 1.93 16 29 H 0.06 1.97 6.59 -2.39 -0.02 1.95 16 30 H 0.01 0.62 4.96 -2.38 -0.01 0.61 16 31 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.02 0.54 6.55 -2.39 -0.02 0.52 16 33 H 0.34 6.48 9.08 -89.70 -0.81 5.67 16 34 H 0.35 8.93 8.24 -89.69 -0.74 8.19 16 35 H 0.09 4.43 3.67 -2.39 -0.01 4.42 16 36 H 0.05 1.68 7.84 -2.39 -0.02 1.66 16 37 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 40 H 0.04 1.40 7.82 -2.39 -0.02 1.38 16 41 H 0.08 2.47 7.40 -2.39 -0.02 2.45 16 42 H 0.06 2.03 6.15 -2.39 -0.01 2.02 16 Total: -1.00 -58.63 294.44 0.81 -57.82 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: -0.62 Total: 29.73 kcal Atomic # 6 Polarization: -37.37 SS G_CDS: 3.71 Total: -33.66 kcal Atomic # 7 Polarization: -96.22 SS G_CDS: -3.98 Total: -100.19 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.69 Total: 46.30 kcal Total: -58.63 0.81 -57.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725007448.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.946 kcal (2) G-P(sol) polarization free energy of solvation -58.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds