Wall clock time and date at job start Mon Mar 30 2020 03:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46890 * 2 1 4 4 N 1.46904 * 109.46620 * 180.02562 * 3 2 1 5 5 C 1.47842 * 111.00238 * 49.15526 * 4 3 2 6 6 C 1.54909 * 104.79478 * 146.36255 * 5 4 3 7 7 C 1.55144 * 101.65226 * 322.93175 * 6 5 4 8 8 H 1.08999 * 110.69931 * 277.27016 * 7 6 5 9 9 N 1.46901 * 110.70419 * 154.03784 * 7 6 5 10 10 C 1.46901 * 111.00179 * 91.39800 * 9 7 6 11 11 H 1.08999 * 109.46692 * 34.99560 * 10 9 7 12 12 C 1.53001 * 109.47021 * 274.99832 * 10 9 7 13 13 C 1.52994 * 109.47214 * 155.00163 * 10 9 7 14 14 C 1.50708 * 109.46959 * 294.99998 * 13 10 9 15 15 H 1.07998 * 119.99580 * 359.97438 * 14 13 10 16 16 C 1.37873 * 119.99982 * 179.97438 * 14 13 10 17 17 N 1.31512 * 120.00016 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00012 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.47056 * 90.00167 * 18 16 14 20 20 H 1.48500 * 109.46993 * 210.00311 * 18 16 14 21 21 H 1.48499 * 109.46859 * 330.00289 * 18 16 14 22 22 C 1.47440 * 110.99676 * 170.00137 * 4 3 2 23 23 H 1.08995 * 109.47392 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47193 * 300.00100 * 1 2 3 25 25 H 1.09005 * 109.46860 * 59.99971 * 1 2 3 26 26 H 1.08998 * 109.47193 * 239.99900 * 2 1 3 27 27 H 1.08999 * 109.46912 * 119.99603 * 2 1 3 28 28 H 1.08998 * 109.47284 * 59.99956 * 3 2 1 29 29 H 1.08999 * 109.47019 * 299.99537 * 3 2 1 30 30 H 1.09004 * 110.37187 * 265.19138 * 5 4 3 31 31 H 1.08998 * 110.37031 * 27.53480 * 5 4 3 32 32 H 1.09002 * 110.99134 * 204.83439 * 6 5 4 33 33 H 1.09000 * 110.98552 * 81.02305 * 6 5 4 34 34 H 1.00902 * 110.99784 * 327.44364 * 9 7 6 35 35 H 1.09000 * 109.47301 * 60.00296 * 12 10 9 36 36 H 1.09001 * 109.46879 * 179.97438 * 12 10 9 37 37 H 1.08993 * 109.47591 * 299.99992 * 12 10 9 38 38 H 1.09000 * 109.47291 * 54.99781 * 13 10 9 39 39 H 1.08993 * 109.47408 * 175.00175 * 13 10 9 40 40 H 0.97009 * 120.00030 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.89463 * 117.33566 * 22 4 3 42 42 H 1.09000 * 109.88994 * 356.14383 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0384 0.5399 -1.0451 6 6 5.3441 1.2183 -1.5294 7 6 4.9552 2.7193 -1.4776 8 1 4.4134 3.0083 -2.3782 9 7 6.1470 3.5586 -1.2948 10 6 6.7033 3.9722 -2.5900 11 1 5.8916 4.1316 -3.2998 12 6 7.6347 2.8790 -3.1174 13 6 7.4907 5.2723 -2.4151 14 6 6.5499 6.3791 -2.0135 15 1 5.4959 6.1755 -1.8953 16 6 7.0349 7.6514 -1.7969 17 7 8.3184 7.8993 -1.9413 18 14 5.8688 9.0235 -1.2999 19 1 5.7703 9.0773 0.1808 20 1 6.3840 10.3198 -1.8091 21 1 4.5250 8.7641 -1.8762 22 6 4.0373 2.7981 -0.2396 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 4.2545 -0.4420 -0.6241 31 1 3.3281 0.4534 -1.8673 32 1 5.5885 0.9131 -2.5469 33 1 6.1698 1.0052 -0.8505 34 1 6.8416 3.0838 -0.7379 35 1 7.0739 1.9527 -3.2421 36 1 8.0472 3.1857 -4.0786 37 1 8.4464 2.7195 -2.4077 38 1 8.2458 5.1383 -1.6405 39 1 7.9768 5.5320 -3.3554 40 1 8.6596 8.7946 -1.7894 41 1 4.6100 3.1309 0.6260 42 1 3.2153 3.4880 -0.4308 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829187890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:42 Heat of formation + Delta-G solvation = -11.816908 kcal Electronic energy + Delta-G solvation = -17760.645610 eV Core-core repulsion = 15160.745027 eV Total energy + Delta-G solvation = -2599.900583 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.31111 -36.49320 -34.17401 -32.49694 -30.77482 -29.52173 -27.35979 -26.97054 -24.92480 -22.91319 -22.23266 -20.48946 -20.17002 -19.63736 -16.33049 -16.06011 -15.87205 -15.17119 -14.53278 -14.09396 -14.02314 -13.57350 -13.37561 -12.89062 -12.72267 -12.54327 -12.21281 -11.91180 -11.84673 -11.67363 -11.41794 -11.37583 -11.19190 -10.97671 -10.82062 -10.78832 -10.60911 -10.50630 -10.28412 -10.01283 -9.20498 -8.94910 -8.22686 -8.21644 -7.54105 -5.84813 -3.82286 3.41733 3.47315 3.50820 4.00148 4.59270 4.60475 4.77861 4.87144 4.96843 4.97435 5.15216 5.29503 5.42626 5.47915 5.52617 5.55633 5.58680 5.65486 5.75299 5.81303 5.84037 5.84784 5.94682 6.04294 6.04598 6.09947 6.17988 6.26661 6.38670 6.50839 6.65486 7.03343 7.05493 7.16064 7.60869 7.72515 8.05549 8.09834 8.20875 8.63465 9.22954 9.78927 11.27372 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025875 B = 0.005266 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.849360 B = 5316.260469 C = 6218.200396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.050 3.950 4 N -0.531 5.531 5 C 0.045 3.955 6 C -0.161 4.161 7 C 0.074 3.926 8 H 0.076 0.924 9 N -0.652 5.652 10 C 0.090 3.910 11 H 0.062 0.938 12 C -0.182 4.182 13 C 0.033 3.967 14 C -0.487 4.487 15 H 0.057 0.943 16 C 0.050 3.950 17 N -0.905 5.905 18 Si 0.890 3.110 19 H -0.282 1.282 20 H -0.290 1.290 21 H -0.277 1.277 22 C 0.050 3.950 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.033 0.967 30 H 0.073 0.927 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.335 0.665 35 H 0.040 0.960 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.017 0.983 39 H 0.017 0.983 40 H 0.257 0.743 41 H 0.088 0.912 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.571 -16.099 1.558 19.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.079 4.079 4 N -0.256 5.256 5 C -0.083 4.083 6 C -0.201 4.201 7 C -0.038 4.038 8 H 0.094 0.906 9 N -0.281 5.281 10 C -0.019 4.019 11 H 0.080 0.920 12 C -0.241 4.241 13 C -0.005 4.005 14 C -0.526 4.526 15 H 0.076 0.924 16 C -0.150 4.150 17 N -0.546 5.546 18 Si 0.718 3.282 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.202 1.202 22 C -0.078 4.078 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.154 0.846 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.066 0.934 41 H 0.106 0.894 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.654 -15.510 2.149 18.939 hybrid contribution -0.440 0.279 -0.811 0.964 sum -11.094 -15.231 1.338 18.890 Atomic orbital electron populations 1.21738 0.95723 1.01566 1.01858 1.21629 0.95528 0.96699 1.02509 1.22359 0.87971 0.96750 1.00787 1.63728 1.07121 1.08509 1.46248 1.22950 0.95464 0.97045 0.92871 1.23578 0.97716 0.97748 1.01072 1.22813 0.93779 0.89719 0.97533 0.90551 1.60460 1.07837 1.42454 1.17366 1.21843 0.96016 0.95651 0.88417 0.91994 1.22658 1.00541 0.99165 1.01697 1.19115 0.94913 0.89672 0.96776 1.21145 0.94525 0.92887 1.44025 0.92441 1.25002 0.94915 0.98748 0.96289 1.69967 1.12479 1.20964 1.51163 0.86636 0.81178 0.81655 0.78704 1.20875 1.21637 1.20171 1.22859 0.97800 0.88311 0.98835 0.92707 0.92605 0.92872 0.91985 0.91277 0.90801 0.94900 0.90821 0.93863 0.91197 0.90685 0.84597 0.94093 0.92687 0.93064 0.96497 0.96529 0.93369 0.89395 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.83 16 2 C -0.13 -1.17 5.60 -26.73 -0.15 -1.32 16 3 C 0.05 0.56 4.82 -3.82 -0.02 0.54 16 4 N -0.53 -6.91 5.31 -231.25 -1.23 -8.14 16 5 C 0.04 0.53 5.30 -2.30 -0.01 0.51 16 6 C -0.16 -2.06 5.68 -24.59 -0.14 -2.19 16 7 C 0.07 1.14 3.23 -65.89 -0.21 0.92 16 8 H 0.08 1.24 7.45 -51.93 -0.39 0.85 16 9 N -0.65 -12.01 5.79 -97.84 -0.57 -12.58 16 10 C 0.09 1.80 2.53 -67.71 -0.17 1.63 16 11 H 0.06 1.28 7.44 -51.93 -0.39 0.89 16 12 C -0.18 -3.02 9.00 37.16 0.33 -2.68 16 13 C 0.03 0.83 4.65 -27.88 -0.13 0.71 16 14 C -0.49 -13.84 8.84 -34.44 -0.30 -14.15 16 15 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 16 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 17 N -0.90 -27.68 13.29 55.43 0.74 -26.94 16 18 Si 0.89 22.36 29.54 -169.99 -5.02 17.33 16 19 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 C 0.05 0.75 6.63 -2.84 -0.02 0.73 16 23 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.57 6.47 -51.93 -0.34 0.24 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.03 0.38 7.96 -51.93 -0.41 -0.03 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.04 0.49 7.02 -51.93 -0.36 0.12 16 32 H 0.07 0.85 6.85 -51.93 -0.36 0.49 16 33 H 0.07 0.97 7.77 -51.93 -0.40 0.57 16 34 H 0.34 5.86 7.95 -39.29 -0.31 5.55 16 35 H 0.04 0.59 5.93 -51.93 -0.31 0.28 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.09 1.43 8.03 -51.93 -0.42 1.01 16 42 H 0.05 0.83 7.49 -51.93 -0.39 0.44 16 LS Contribution 324.73 15.07 4.89 4.89 Total: -1.00 -29.82 324.73 -9.58 -39.40 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -7.84 Total: 0.82 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -0.55 Total: -14.78 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: -1.06 Total: -47.66 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.82 -9.58 -39.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829187890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.586 kcal (2) G-P(sol) polarization free energy of solvation -29.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds