Wall clock time and date at job start Mon Mar 30 2020 03:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46890 * 2 1 4 4 N 1.46904 * 109.46620 * 180.02562 * 3 2 1 5 5 C 1.47842 * 111.00238 * 49.15526 * 4 3 2 6 6 C 1.54909 * 104.79478 * 146.36255 * 5 4 3 7 7 C 1.55144 * 101.65226 * 322.93175 * 6 5 4 8 8 H 1.08999 * 110.69931 * 277.27016 * 7 6 5 9 9 N 1.46901 * 110.70419 * 154.03784 * 7 6 5 10 10 C 1.46901 * 111.00179 * 91.39800 * 9 7 6 11 11 H 1.08999 * 109.46692 * 34.99560 * 10 9 7 12 12 C 1.53001 * 109.47021 * 274.99832 * 10 9 7 13 13 C 1.52994 * 109.47214 * 155.00163 * 10 9 7 14 14 C 1.50708 * 109.46959 * 294.99998 * 13 10 9 15 15 H 1.07998 * 119.99580 * 359.97438 * 14 13 10 16 16 C 1.37873 * 119.99982 * 179.97438 * 14 13 10 17 17 N 1.31512 * 120.00016 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00012 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.47056 * 90.00167 * 18 16 14 20 20 H 1.48500 * 109.46993 * 210.00311 * 18 16 14 21 21 H 1.48499 * 109.46859 * 330.00289 * 18 16 14 22 22 C 1.47440 * 110.99676 * 170.00137 * 4 3 2 23 23 H 1.08995 * 109.47392 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47193 * 300.00100 * 1 2 3 25 25 H 1.09005 * 109.46860 * 59.99971 * 1 2 3 26 26 H 1.08998 * 109.47193 * 239.99900 * 2 1 3 27 27 H 1.08999 * 109.46912 * 119.99603 * 2 1 3 28 28 H 1.08998 * 109.47284 * 59.99956 * 3 2 1 29 29 H 1.08999 * 109.47019 * 299.99537 * 3 2 1 30 30 H 1.09004 * 110.37187 * 265.19138 * 5 4 3 31 31 H 1.08998 * 110.37031 * 27.53480 * 5 4 3 32 32 H 1.09002 * 110.99134 * 204.83439 * 6 5 4 33 33 H 1.09000 * 110.98552 * 81.02305 * 6 5 4 34 34 H 1.00902 * 110.99784 * 327.44364 * 9 7 6 35 35 H 1.09000 * 109.47301 * 60.00296 * 12 10 9 36 36 H 1.09001 * 109.46879 * 179.97438 * 12 10 9 37 37 H 1.08993 * 109.47591 * 299.99992 * 12 10 9 38 38 H 1.09000 * 109.47291 * 54.99781 * 13 10 9 39 39 H 1.08993 * 109.47408 * 175.00175 * 13 10 9 40 40 H 0.97009 * 120.00030 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.89463 * 117.33566 * 22 4 3 42 42 H 1.09000 * 109.88994 * 356.14383 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0384 0.5399 -1.0451 6 6 5.3441 1.2183 -1.5294 7 6 4.9552 2.7193 -1.4776 8 1 4.4134 3.0083 -2.3782 9 7 6.1470 3.5586 -1.2948 10 6 6.7033 3.9722 -2.5900 11 1 5.8916 4.1316 -3.2998 12 6 7.6347 2.8790 -3.1174 13 6 7.4907 5.2723 -2.4151 14 6 6.5499 6.3791 -2.0135 15 1 5.4959 6.1755 -1.8953 16 6 7.0349 7.6514 -1.7969 17 7 8.3184 7.8993 -1.9413 18 14 5.8688 9.0235 -1.2999 19 1 5.7703 9.0773 0.1808 20 1 6.3840 10.3198 -1.8091 21 1 4.5250 8.7641 -1.8762 22 6 4.0373 2.7981 -0.2396 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 4.2545 -0.4420 -0.6241 31 1 3.3281 0.4534 -1.8673 32 1 5.5885 0.9131 -2.5469 33 1 6.1698 1.0052 -0.8505 34 1 6.8416 3.0838 -0.7379 35 1 7.0739 1.9527 -3.2421 36 1 8.0472 3.1857 -4.0786 37 1 8.4464 2.7195 -2.4077 38 1 8.2458 5.1383 -1.6405 39 1 7.9768 5.5320 -3.3554 40 1 8.6596 8.7946 -1.7894 41 1 4.6100 3.1309 0.6260 42 1 3.2153 3.4880 -0.4308 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829187890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:42 Heat of formation + Delta-G solvation = -31.695556 kcal Electronic energy + Delta-G solvation = -17761.507613 eV Core-core repulsion = 15160.745027 eV Total energy + Delta-G solvation = -2600.762586 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.42701 -37.89301 -35.38632 -34.37904 -32.08196 -30.64110 -29.22745 -28.18243 -25.94289 -24.89556 -23.10656 -21.79902 -21.27334 -21.04749 -18.39475 -17.18393 -17.11099 -16.48836 -16.15784 -15.49966 -15.24285 -14.57424 -14.51213 -14.26629 -14.12394 -13.90652 -13.45586 -13.27186 -13.12872 -13.05428 -12.78336 -12.61521 -12.59645 -12.36779 -12.22504 -12.08878 -11.87964 -11.75090 -11.62471 -11.56828 -11.07809 -11.00979 -10.48351 -9.26406 -8.95775 -8.09324 -6.14091 1.41030 1.42765 1.52685 2.47501 2.97616 3.23096 3.39316 3.78531 3.83729 4.03370 4.10448 4.17265 4.31847 4.36377 4.46280 4.50232 4.50422 4.57982 4.63287 4.74417 4.81091 4.88677 4.90868 4.99480 5.08481 5.13410 5.17008 5.19134 5.25711 5.30080 5.32313 5.40588 5.52456 5.70405 5.90639 6.00443 6.16772 6.35686 6.51973 6.74085 7.00080 7.51542 9.02879 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025875 B = 0.005266 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.849360 B = 5316.260469 C = 6218.200396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.048 3.952 4 N -0.537 5.537 5 C 0.048 3.952 6 C -0.151 4.151 7 C 0.075 3.925 8 H 0.068 0.932 9 N -0.670 5.670 10 C 0.102 3.898 11 H 0.055 0.945 12 C -0.170 4.170 13 C 0.037 3.963 14 C -0.499 4.499 15 H 0.055 0.945 16 C -0.007 4.007 17 N -0.941 5.941 18 Si 0.957 3.043 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.267 1.267 22 C 0.055 3.945 23 H 0.066 0.934 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.029 0.971 30 H 0.089 0.911 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.340 0.660 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.052 0.948 38 H -0.010 1.010 39 H -0.009 1.009 40 H 0.258 0.742 41 H 0.070 0.930 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.067 -17.594 1.616 21.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.080 4.080 4 N -0.262 5.262 5 C -0.079 4.079 6 C -0.191 4.191 7 C -0.037 4.037 8 H 0.086 0.914 9 N -0.300 5.300 10 C -0.008 4.008 11 H 0.073 0.927 12 C -0.229 4.229 13 C -0.001 4.001 14 C -0.537 4.537 15 H 0.073 0.927 16 C -0.202 4.202 17 N -0.583 5.583 18 Si 0.783 3.217 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.192 1.192 22 C -0.073 4.073 23 H 0.085 0.915 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.047 0.953 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.159 0.841 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.009 0.991 39 H 0.010 0.990 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.167 -17.028 2.207 21.045 hybrid contribution 0.019 0.733 -0.812 1.093 sum -12.148 -16.296 1.395 20.373 Atomic orbital electron populations 1.21722 0.94634 1.02387 1.01923 1.21578 0.96420 0.95068 1.02636 1.22419 0.86889 0.98230 1.00460 1.63728 1.08251 1.07341 1.46869 1.22995 0.94901 0.97162 0.92872 1.23473 0.98327 0.95344 1.01910 1.22767 0.92407 0.91202 0.97340 0.91364 1.60277 1.08810 1.44241 1.16694 1.21480 0.95715 0.94272 0.89294 0.92667 1.22507 1.00059 0.98992 1.01351 1.19004 0.94407 0.92310 0.94328 1.21484 0.94761 0.93925 1.43525 0.92723 1.25860 0.96506 1.01456 0.96409 1.70095 1.14321 1.21612 1.52311 0.85574 0.79282 0.78484 0.78401 1.20357 1.21097 1.19198 1.22703 0.97285 0.89519 0.97840 0.91512 0.92517 0.92880 0.91537 0.91379 0.91107 0.95315 0.89279 0.92965 0.89993 0.90596 0.84130 0.91160 0.92805 0.92921 0.99135 0.99047 0.93280 0.91149 0.93543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 71.98 0.71 -1.31 16 2 C -0.12 -1.95 5.60 30.60 0.17 -1.78 16 3 C 0.05 1.01 4.82 86.30 0.42 1.42 16 4 N -0.54 -13.11 5.31 -885.54 -4.71 -17.82 16 5 C 0.05 1.00 5.30 86.77 0.46 1.46 16 6 C -0.15 -3.47 5.68 31.98 0.18 -3.29 16 7 C 0.07 2.22 3.23 46.10 0.15 2.37 16 8 H 0.07 2.15 7.45 -2.39 -0.02 2.13 16 9 N -0.67 -24.54 5.79 -463.45 -2.68 -27.22 16 10 C 0.10 4.08 2.53 44.91 0.11 4.20 16 11 H 0.06 2.27 7.44 -2.39 -0.02 2.25 16 12 C -0.17 -5.43 9.00 71.98 0.65 -4.79 16 13 C 0.04 1.95 4.65 29.85 0.14 2.09 16 14 C -0.50 -28.81 8.84 25.60 0.23 -28.58 16 15 H 0.05 3.12 7.74 -2.91 -0.02 3.10 16 16 C -0.01 -0.39 5.46 84.65 0.46 0.08 16 17 N -0.94 -58.69 13.29 21.45 0.28 -58.41 16 18 Si 0.96 46.21 29.54 68.60 2.03 48.23 16 19 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 20 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 21 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 22 C 0.06 1.62 6.63 86.65 0.57 2.19 16 23 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 26 H 0.07 1.04 6.47 -2.39 -0.02 1.02 16 27 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.03 0.63 7.96 -2.39 -0.02 0.61 16 30 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 31 H 0.05 1.01 7.02 -2.39 -0.02 0.99 16 32 H 0.08 1.71 6.85 -2.39 -0.02 1.69 16 33 H 0.08 1.77 7.77 -2.39 -0.02 1.75 16 34 H 0.34 11.75 7.95 -89.69 -0.71 11.04 16 35 H 0.07 1.83 5.93 -2.39 -0.01 1.82 16 36 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.05 1.66 8.13 -2.39 -0.02 1.64 16 38 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 39 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 40 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16 41 H 0.07 2.30 8.03 -2.39 -0.02 2.28 16 42 H 0.05 1.41 7.49 -2.39 -0.02 1.39 16 Total: -1.00 -64.24 324.73 -0.57 -64.82 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.25 Total: 16.33 kcal Atomic # 6 Polarization: -30.20 SS G_CDS: 4.26 Total: -25.94 kcal Atomic # 7 Polarization: -96.34 SS G_CDS: -7.10 Total: -103.44 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.23 kcal Total: -64.24 -0.57 -64.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829187890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.121 kcal (2) G-P(sol) polarization free energy of solvation -64.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds