Wall clock time and date at job start Mon Mar 30 2020 03:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47318 * 2 1 4 4 N 1.46897 * 109.47002 * 179.97438 * 3 2 1 5 5 C 1.47840 * 110.99988 * 69.15626 * 4 3 2 6 6 C 1.54906 * 104.79510 * 146.36231 * 5 4 3 7 7 C 1.55138 * 101.65573 * 322.92945 * 6 5 4 8 8 H 1.09003 * 110.70420 * 277.27538 * 7 6 5 9 9 N 1.46901 * 110.71110 * 154.03579 * 7 6 5 10 10 C 1.46903 * 110.99873 * 91.39807 * 9 7 6 11 11 H 1.09003 * 109.47176 * 325.00607 * 10 9 7 12 12 C 1.52998 * 109.46713 * 85.00302 * 10 9 7 13 13 C 1.52997 * 109.46801 * 205.00159 * 10 9 7 14 14 C 1.50701 * 109.47219 * 65.00659 * 13 10 9 15 15 H 1.07995 * 119.99770 * 359.97438 * 14 13 10 16 16 C 1.37876 * 119.99981 * 179.97438 * 14 13 10 17 17 N 1.31515 * 120.00105 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 120.00023 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47285 * 89.99477 * 18 16 14 20 20 H 1.48502 * 109.46728 * 209.99851 * 18 16 14 21 21 H 1.48503 * 109.46859 * 329.99608 * 18 16 14 22 22 C 1.47446 * 110.99737 * 189.99802 * 4 3 2 23 23 H 1.09000 * 109.47301 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47183 * 300.00567 * 1 2 3 25 25 H 1.09005 * 109.46986 * 60.00020 * 1 2 3 26 26 H 1.08991 * 109.47346 * 239.99630 * 2 1 3 27 27 H 1.09003 * 109.47223 * 119.99494 * 2 1 3 28 28 H 1.09000 * 109.46985 * 59.99543 * 3 2 1 29 29 H 1.08995 * 109.46660 * 299.99623 * 3 2 1 30 30 H 1.08998 * 110.37675 * 265.18757 * 5 4 3 31 31 H 1.08996 * 110.37806 * 27.53589 * 5 4 3 32 32 H 1.09006 * 110.99331 * 81.02189 * 6 5 4 33 33 H 1.09000 * 110.99212 * 204.79653 * 6 5 4 34 34 H 1.00896 * 111.00335 * 215.35368 * 9 7 6 35 35 H 1.09000 * 109.47516 * 60.00059 * 12 10 9 36 36 H 1.09002 * 109.47107 * 179.97438 * 12 10 9 37 37 H 1.08999 * 109.47213 * 299.99763 * 12 10 9 38 38 H 1.09010 * 109.46993 * 185.00323 * 13 10 9 39 39 H 1.08996 * 109.47476 * 304.99968 * 13 10 9 40 40 H 0.96993 * 120.00132 * 179.97438 * 17 16 14 41 41 H 1.08996 * 109.88895 * 356.15286 * 22 4 3 42 42 H 1.09001 * 109.88694 * 117.33682 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0393 0.9511 -1.2890 6 6 5.3453 1.7540 -1.5113 7 6 4.9563 3.1470 -0.9500 8 1 4.4151 3.7264 -1.6980 9 7 6.1477 3.8731 -0.4904 10 6 6.7051 4.7043 -1.5658 11 1 6.5743 4.1972 -2.5218 12 6 5.9782 6.0502 -1.5989 13 6 8.1958 4.9358 -1.3109 14 6 8.9305 3.6231 -1.4002 15 1 8.3884 2.7145 -1.6168 16 6 10.2949 3.5821 -1.2056 17 7 10.9360 2.4364 -1.2830 18 14 11.2325 5.1536 -0.8303 19 1 11.2791 5.3634 0.6390 20 1 12.6158 5.0428 -1.3588 21 1 10.5477 6.3040 -1.4731 22 6 4.0373 2.7981 0.2396 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6768 1.9563 -0.8900 30 1 4.2553 -0.1155 -1.2288 31 1 3.3299 1.1509 -2.0919 32 1 6.1706 1.3216 -0.9454 33 1 5.5910 1.8142 -2.5715 34 1 5.9401 4.4291 0.3256 35 1 6.1089 6.5573 -0.6429 36 1 6.3920 6.6671 -2.3965 37 1 4.9162 5.8852 -1.7804 38 1 8.5897 5.6243 -2.0587 39 1 8.3326 5.3619 -0.3170 40 1 11.8959 2.4076 -1.1464 41 1 3.2155 3.5119 0.2952 42 1 4.6092 2.8149 1.1674 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829187892.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:48 Heat of formation + Delta-G solvation = -9.171280 kcal Electronic energy + Delta-G solvation = -17760.208247 eV Core-core repulsion = 15160.422387 eV Total energy + Delta-G solvation = -2599.785860 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.17785 -36.51524 -34.22359 -32.43500 -30.91769 -29.55502 -27.82975 -27.04737 -24.93285 -22.69433 -21.93374 -20.53740 -20.17235 -19.53782 -16.54040 -15.95918 -15.83793 -15.28214 -14.62304 -14.11706 -13.85647 -13.55326 -13.43334 -13.14223 -12.80861 -12.46557 -12.31308 -12.10745 -11.89628 -11.76137 -11.66791 -11.28521 -11.11133 -10.87028 -10.83402 -10.71522 -10.54384 -10.46258 -10.07488 -9.74132 -9.53953 -8.99799 -8.37670 -8.22646 -7.62159 -5.86110 -3.79586 3.39642 3.46690 3.48976 3.98407 4.58614 4.67766 4.72447 4.89550 4.97252 5.12585 5.23909 5.31789 5.41643 5.48240 5.49478 5.55362 5.60541 5.63549 5.70130 5.76351 5.82023 5.85610 5.97093 6.03064 6.12745 6.14083 6.17533 6.31352 6.41437 6.48506 6.75728 6.85132 7.06628 7.17586 7.20668 7.35643 7.85189 7.95310 8.10998 8.77480 9.25884 9.77176 11.28030 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.038566 B = 0.004804 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.845874 B = 5827.338391 C = 6283.280715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C 0.051 3.949 4 N -0.526 5.526 5 C 0.042 3.958 6 C -0.115 4.115 7 C 0.069 3.931 8 H 0.040 0.960 9 N -0.650 5.650 10 C 0.098 3.902 11 H 0.069 0.931 12 C -0.183 4.183 13 C -0.003 4.003 14 C -0.487 4.487 15 H 0.078 0.922 16 C 0.060 3.940 17 N -0.909 5.909 18 Si 0.874 3.126 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.269 1.269 22 C 0.042 3.958 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.030 0.970 30 H 0.078 0.922 31 H 0.039 0.961 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.331 0.669 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.039 0.961 38 H 0.015 0.985 39 H 0.011 0.989 40 H 0.259 0.741 41 H 0.046 0.954 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.821 0.201 1.255 18.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.078 4.078 4 N -0.251 5.251 5 C -0.085 4.085 6 C -0.154 4.154 7 C -0.042 4.042 8 H 0.058 0.942 9 N -0.280 5.280 10 C -0.011 4.011 11 H 0.087 0.913 12 C -0.242 4.242 13 C -0.041 4.041 14 C -0.525 4.525 15 H 0.096 0.904 16 C -0.139 4.139 17 N -0.550 5.550 18 Si 0.703 3.297 19 H -0.206 1.206 20 H -0.218 1.218 21 H -0.194 1.194 22 C -0.086 4.086 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.048 0.952 30 H 0.096 0.904 31 H 0.057 0.943 32 H 0.112 0.888 33 H 0.086 0.914 34 H 0.149 0.851 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.033 0.967 39 H 0.029 0.971 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.061 -0.724 1.558 18.142 hybrid contribution -0.331 2.119 -0.461 2.194 sum -18.392 1.395 1.097 18.478 Atomic orbital electron populations 1.21745 0.95929 1.01612 1.01577 1.21494 0.94985 0.96543 1.02792 1.22354 0.88068 0.97082 1.00279 1.63552 1.06822 1.22178 1.32502 1.23084 0.96029 1.00304 0.89122 1.22750 0.97152 0.94147 1.01322 1.22692 0.90599 0.95629 0.95290 0.94201 1.60547 1.27809 1.32411 1.07231 1.21600 0.96389 0.89179 0.93955 0.91269 1.22607 0.99468 1.00319 1.01782 1.19599 0.90638 0.97967 0.95909 1.21044 0.91780 0.93639 1.46068 0.90401 1.25013 0.97797 0.95471 0.95640 1.69911 1.08538 1.24695 1.51855 0.86879 0.79174 0.84995 0.78702 1.20604 1.21763 1.19422 1.22989 0.97162 0.88705 0.99718 0.92625 0.92793 0.93022 0.92020 0.91120 0.91222 0.95169 0.90367 0.94258 0.88818 0.91371 0.85070 0.93007 0.92483 0.94220 0.96663 0.97075 0.93141 0.93556 0.89522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.82 16 2 C -0.12 -1.17 5.98 -26.73 -0.16 -1.33 16 3 C 0.05 0.56 4.56 -3.82 -0.02 0.54 16 4 N -0.53 -7.10 5.16 -231.26 -1.19 -8.30 16 5 C 0.04 0.58 5.78 -2.30 -0.01 0.56 16 6 C -0.12 -1.89 6.76 -24.59 -0.17 -2.05 16 7 C 0.07 1.08 3.02 -65.89 -0.20 0.88 16 8 H 0.04 0.61 7.24 -51.93 -0.38 0.24 16 9 N -0.65 -11.84 5.80 -97.83 -0.57 -12.40 16 10 C 0.10 1.90 2.40 -67.71 -0.16 1.74 16 11 H 0.07 1.41 7.86 -51.93 -0.41 1.00 16 12 C -0.18 -2.87 9.15 37.16 0.34 -2.53 16 13 C 0.00 -0.08 3.72 -27.88 -0.10 -0.19 16 14 C -0.49 -13.88 9.39 -34.44 -0.32 -14.20 16 15 H 0.08 2.41 7.99 -52.49 -0.42 1.99 16 16 C 0.06 1.77 5.47 -17.82 -0.10 1.68 16 17 N -0.91 -28.62 13.96 55.43 0.77 -27.85 16 18 Si 0.87 22.17 27.47 -169.99 -4.67 17.50 16 19 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 21 H -0.27 -6.54 6.54 56.52 0.37 -6.17 16 22 C 0.04 0.58 6.37 -2.83 -0.02 0.57 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.62 7.49 -51.93 -0.39 0.23 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.73 8.03 -51.93 -0.42 0.31 16 29 H 0.03 0.33 7.85 -51.93 -0.41 -0.08 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.04 0.49 7.62 -51.93 -0.40 0.10 16 32 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.33 5.51 8.06 -39.29 -0.32 5.19 16 35 H 0.05 0.77 8.13 -51.93 -0.42 0.35 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.04 0.55 7.52 -51.93 -0.39 0.16 16 38 H 0.02 0.37 7.20 -51.92 -0.37 -0.01 16 39 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 40 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 41 H 0.05 0.56 7.55 -51.93 -0.39 0.17 16 42 H 0.09 1.27 7.90 -51.93 -0.41 0.86 16 LS Contribution 327.11 15.07 4.93 4.93 Total: -1.00 -30.56 327.11 -9.34 -39.90 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -8.06 Total: 1.36 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -0.55 Total: -15.14 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: -0.99 Total: -48.55 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.50 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.56 -9.34 -39.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829187892.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.730 kcal (2) G-P(sol) polarization free energy of solvation -30.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds