Wall clock time and date at job start Mon Mar 30 2020 03:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47071 * 2 1 4 4 N 1.46900 * 109.46748 * 179.97438 * 3 2 1 5 5 C 1.47900 * 111.00149 * 69.87611 * 4 3 2 6 6 C 1.53984 * 107.06152 * 145.84039 * 5 4 3 7 7 C 1.54599 * 105.14223 * 358.77296 * 6 5 4 8 8 H 1.08997 * 110.72427 * 96.57479 * 7 6 5 9 9 N 1.46901 * 110.72548 * 219.68886 * 7 6 5 10 10 C 1.46908 * 110.99611 * 273.54044 * 9 7 6 11 11 H 1.09000 * 109.46973 * 35.00427 * 10 9 7 12 12 C 1.52996 * 109.47004 * 274.99818 * 10 9 7 13 13 C 1.52996 * 109.46833 * 155.00030 * 10 9 7 14 14 C 1.50702 * 109.47159 * 294.99820 * 13 10 9 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 10 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 10 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.48534 * 110.99382 * 187.26484 * 4 3 2 23 23 H 1.08995 * 109.46782 * 60.00656 * 1 2 3 24 24 H 1.08997 * 109.46925 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47538 * 300.00632 * 1 2 3 26 26 H 1.08997 * 109.47538 * 239.99368 * 2 1 3 27 27 H 1.09008 * 109.47047 * 119.99432 * 2 1 3 28 28 H 1.08997 * 109.47455 * 59.99318 * 3 2 1 29 29 H 1.09004 * 109.46697 * 299.99123 * 3 2 1 30 30 H 1.09002 * 109.92034 * 26.48309 * 5 4 3 31 31 H 1.09009 * 110.08009 * 265.28539 * 5 4 3 32 32 H 1.09003 * 110.31000 * 239.85361 * 6 5 4 33 33 H 1.09000 * 110.30989 * 117.68620 * 6 5 4 34 34 H 1.00896 * 110.99985 * 37.49622 * 9 7 6 35 35 H 1.08993 * 109.47136 * 300.00279 * 12 10 9 36 36 H 1.09001 * 109.47101 * 60.00413 * 12 10 9 37 37 H 1.09000 * 109.46774 * 180.02562 * 12 10 9 38 38 H 1.09004 * 109.47066 * 175.00023 * 13 10 9 39 39 H 1.08994 * 109.47405 * 54.99853 * 13 10 9 40 40 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 41 41 H 1.09002 * 110.66622 * 81.84853 * 22 4 3 42 42 H 1.09003 * 110.67419 * 318.71274 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0396 0.9672 -1.2955 6 6 5.3389 1.7483 -1.5656 7 6 5.4894 2.7095 -0.3642 8 1 6.1539 2.2852 0.3884 9 7 5.9789 4.0220 -0.8066 10 6 7.4465 4.0427 -0.8692 11 1 7.8103 3.0658 -1.1875 12 6 8.0113 4.3716 0.5141 13 6 7.8991 5.1068 -1.8711 14 6 7.4465 4.7185 -3.2551 15 1 6.8911 3.8045 -3.4051 16 6 7.7360 5.5334 -4.3290 17 7 8.4120 6.6466 -4.1463 18 14 7.1683 5.0560 -6.0434 19 1 5.6872 4.9499 -6.0627 20 1 7.6035 6.0912 -7.0151 21 1 7.7633 3.7473 -6.4155 22 6 4.0412 2.8181 0.1760 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 1.6766 1.9565 0.8899 29 1 1.6768 1.9563 -0.8901 30 1 3.3167 1.1638 -2.0873 31 1 4.2522 -0.1007 -1.2440 32 1 5.2547 2.3133 -2.4940 33 1 6.1876 1.0660 -1.6128 34 1 5.5753 4.2776 -1.6953 35 1 7.6474 5.3484 0.8323 36 1 7.6888 3.6135 1.2278 37 1 9.1002 4.3874 0.4675 38 1 8.9863 5.1840 -1.8527 39 1 7.4620 6.0683 -1.6022 40 1 8.6160 7.2197 -4.9019 41 1 4.0436 3.0982 1.2294 42 1 3.4639 3.5319 -0.4117 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829187893.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:51 Heat of formation + Delta-G solvation = -19.676216 kcal Electronic energy + Delta-G solvation = -17786.965469 eV Core-core repulsion = 15186.724081 eV Total energy + Delta-G solvation = -2600.241388 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.13713 -36.38231 -34.21800 -32.57754 -30.87850 -29.28477 -27.40448 -27.14177 -24.83070 -23.00215 -21.95446 -20.66277 -19.95093 -19.33776 -16.34289 -16.16409 -15.84097 -15.08994 -14.67114 -14.33367 -13.81730 -13.65842 -13.37056 -13.04288 -12.62921 -12.43617 -12.08719 -11.81876 -11.69748 -11.56375 -11.44267 -11.27211 -11.21647 -10.95596 -10.85032 -10.68284 -10.61283 -10.38571 -10.34201 -10.15320 -9.23747 -9.06896 -8.40891 -8.35857 -7.61723 -6.03893 -4.07016 3.28695 3.34248 3.35527 3.99850 4.41355 4.70375 4.89270 4.93571 4.93823 5.16514 5.25998 5.31532 5.36069 5.43291 5.55493 5.58881 5.63324 5.82078 5.84716 5.87585 5.99231 6.02214 6.08974 6.11844 6.17001 6.24166 6.30682 6.34025 6.43496 6.59658 6.94433 6.95361 6.96704 7.13917 7.54877 7.63526 7.96142 8.07363 8.27594 8.36769 8.99067 9.57004 11.07041 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024481 B = 0.005478 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.475323 B = 5109.937547 C = 5944.478123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C 0.047 3.953 4 N -0.521 5.521 5 C 0.041 3.959 6 C -0.164 4.164 7 C 0.089 3.911 8 H 0.083 0.917 9 N -0.675 5.675 10 C 0.089 3.911 11 H 0.030 0.970 12 C -0.136 4.136 13 C 0.020 3.980 14 C -0.524 4.524 15 H 0.051 0.949 16 C 0.061 3.939 17 N -0.891 5.891 18 Si 0.888 3.112 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.278 1.278 22 C 0.047 3.953 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.034 0.966 30 H 0.040 0.960 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.354 0.646 35 H 0.054 0.946 36 H 0.037 0.963 37 H 0.047 0.953 38 H 0.021 0.979 39 H 0.025 0.975 40 H 0.261 0.739 41 H 0.081 0.919 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.109 -10.737 7.755 17.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.082 4.082 4 N -0.245 5.245 5 C -0.088 4.088 6 C -0.203 4.203 7 C -0.023 4.023 8 H 0.101 0.899 9 N -0.308 5.308 10 C -0.021 4.021 11 H 0.048 0.952 12 C -0.194 4.194 13 C -0.017 4.017 14 C -0.562 4.562 15 H 0.069 0.931 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.716 3.284 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.203 1.203 22 C -0.082 4.082 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.176 0.824 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.039 0.961 39 H 0.044 0.956 40 H 0.071 0.929 41 H 0.099 0.901 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.891 -10.613 8.704 17.521 hybrid contribution -0.415 -0.259 -2.586 2.632 sum -11.306 -10.872 6.118 16.836 Atomic orbital electron populations 1.21744 0.95858 1.01565 1.01738 1.21486 0.95115 0.96566 1.02534 1.22306 0.88086 0.96999 1.00780 1.64729 1.07319 1.21355 1.31137 1.22789 0.96062 0.99845 0.90070 1.23216 0.97163 0.99677 1.00294 1.22422 0.95057 0.89280 0.95519 0.89859 1.60548 1.08287 1.25085 1.36921 1.21592 0.86097 0.99227 0.95140 0.95185 1.21807 0.99394 1.00997 0.97157 1.19273 0.96674 0.93738 0.91997 1.21145 1.35832 1.06692 0.92557 0.93058 1.24981 0.95149 0.94952 0.98954 1.69951 1.39391 1.12429 1.31192 0.86723 0.79079 0.78161 0.84417 1.20294 1.21235 1.20348 1.23155 0.95212 0.88515 1.01272 0.92909 0.92695 0.92707 0.92191 0.91279 0.90953 0.94795 0.94116 0.90944 0.90774 0.91362 0.82382 0.92681 0.94427 0.93361 0.96072 0.95647 0.92887 0.90058 0.93379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 37.16 0.37 -0.86 16 2 C -0.12 -1.16 5.99 -26.73 -0.16 -1.32 16 3 C 0.05 0.53 4.76 -3.82 -0.02 0.51 16 4 N -0.52 -6.94 5.27 -230.44 -1.21 -8.15 16 5 C 0.04 0.55 5.79 -2.76 -0.02 0.53 16 6 C -0.16 -2.54 6.46 -25.38 -0.16 -2.70 16 7 C 0.09 1.43 3.13 -65.85 -0.21 1.23 16 8 H 0.08 1.36 7.22 -51.93 -0.38 0.99 16 9 N -0.68 -12.82 6.16 -97.79 -0.60 -13.42 16 10 C 0.09 1.83 2.47 -67.71 -0.17 1.66 16 11 H 0.03 0.64 7.75 -51.93 -0.40 0.24 16 12 C -0.14 -2.45 9.40 37.16 0.35 -2.10 16 13 C 0.02 0.52 4.57 -27.88 -0.13 0.39 16 14 C -0.52 -14.21 8.12 -34.44 -0.28 -14.49 16 15 H 0.05 1.34 7.47 -52.49 -0.39 0.95 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 18 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C 0.05 0.67 6.22 -1.89 -0.01 0.66 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.60 7.52 -51.93 -0.39 0.21 16 27 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 28 H 0.07 0.78 8.11 -51.93 -0.42 0.36 16 29 H 0.03 0.40 7.82 -51.93 -0.41 -0.01 16 30 H 0.04 0.54 7.57 -51.93 -0.39 0.15 16 31 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 32 H 0.07 1.27 7.58 -51.93 -0.39 0.88 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.35 7.36 6.65 -39.29 -0.26 7.10 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.04 0.61 7.45 -51.93 -0.39 0.22 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.05 0.72 8.02 -51.93 -0.42 0.31 16 LS Contribution 328.89 15.07 4.96 4.96 Total: -1.00 -28.03 328.89 -9.70 -37.72 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -8.02 Total: 3.13 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: -0.53 Total: -14.86 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: -1.08 Total: -47.22 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.03 -9.70 -37.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829187893.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.047 kcal (2) G-P(sol) polarization free energy of solvation -28.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds