Wall clock time and date at job start Mon Mar 30 2020 03:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47071 * 2 1 4 4 N 1.46900 * 109.46748 * 179.97438 * 3 2 1 5 5 C 1.47900 * 111.00149 * 69.87611 * 4 3 2 6 6 C 1.53984 * 107.06152 * 145.84039 * 5 4 3 7 7 C 1.54599 * 105.14223 * 358.77296 * 6 5 4 8 8 H 1.08997 * 110.72427 * 96.57479 * 7 6 5 9 9 N 1.46901 * 110.72548 * 219.68886 * 7 6 5 10 10 C 1.46908 * 110.99611 * 273.54044 * 9 7 6 11 11 H 1.09000 * 109.46973 * 35.00427 * 10 9 7 12 12 C 1.52996 * 109.47004 * 274.99818 * 10 9 7 13 13 C 1.52996 * 109.46833 * 155.00030 * 10 9 7 14 14 C 1.50702 * 109.47159 * 294.99820 * 13 10 9 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 10 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 10 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.48534 * 110.99382 * 187.26484 * 4 3 2 23 23 H 1.08995 * 109.46782 * 60.00656 * 1 2 3 24 24 H 1.08997 * 109.46925 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47538 * 300.00632 * 1 2 3 26 26 H 1.08997 * 109.47538 * 239.99368 * 2 1 3 27 27 H 1.09008 * 109.47047 * 119.99432 * 2 1 3 28 28 H 1.08997 * 109.47455 * 59.99318 * 3 2 1 29 29 H 1.09004 * 109.46697 * 299.99123 * 3 2 1 30 30 H 1.09002 * 109.92034 * 26.48309 * 5 4 3 31 31 H 1.09009 * 110.08009 * 265.28539 * 5 4 3 32 32 H 1.09003 * 110.31000 * 239.85361 * 6 5 4 33 33 H 1.09000 * 110.30989 * 117.68620 * 6 5 4 34 34 H 1.00896 * 110.99985 * 37.49622 * 9 7 6 35 35 H 1.08993 * 109.47136 * 300.00279 * 12 10 9 36 36 H 1.09001 * 109.47101 * 60.00413 * 12 10 9 37 37 H 1.09000 * 109.46774 * 180.02562 * 12 10 9 38 38 H 1.09004 * 109.47066 * 175.00023 * 13 10 9 39 39 H 1.08994 * 109.47405 * 54.99853 * 13 10 9 40 40 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 41 41 H 1.09002 * 110.66622 * 81.84853 * 22 4 3 42 42 H 1.09003 * 110.67419 * 318.71274 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0396 0.9672 -1.2955 6 6 5.3389 1.7483 -1.5656 7 6 5.4894 2.7095 -0.3642 8 1 6.1539 2.2852 0.3884 9 7 5.9789 4.0220 -0.8066 10 6 7.4465 4.0427 -0.8692 11 1 7.8103 3.0658 -1.1875 12 6 8.0113 4.3716 0.5141 13 6 7.8991 5.1068 -1.8711 14 6 7.4465 4.7185 -3.2551 15 1 6.8911 3.8045 -3.4051 16 6 7.7360 5.5334 -4.3290 17 7 8.4120 6.6466 -4.1463 18 14 7.1683 5.0560 -6.0434 19 1 5.6872 4.9499 -6.0627 20 1 7.6035 6.0912 -7.0151 21 1 7.7633 3.7473 -6.4155 22 6 4.0412 2.8181 0.1760 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 1.6766 1.9565 0.8899 29 1 1.6768 1.9563 -0.8901 30 1 3.3167 1.1638 -2.0873 31 1 4.2522 -0.1007 -1.2440 32 1 5.2547 2.3133 -2.4940 33 1 6.1876 1.0660 -1.6128 34 1 5.5753 4.2776 -1.6953 35 1 7.6474 5.3484 0.8323 36 1 7.6888 3.6135 1.2278 37 1 9.1002 4.3874 0.4675 38 1 8.9863 5.1840 -1.8527 39 1 7.4620 6.0683 -1.6022 40 1 8.6160 7.2197 -4.9019 41 1 4.0436 3.0982 1.2294 42 1 3.4639 3.5319 -0.4117 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829187893.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:50 Heat of formation + Delta-G solvation = -37.546047 kcal Electronic energy + Delta-G solvation = -17787.740363 eV Core-core repulsion = 15186.724081 eV Total energy + Delta-G solvation = -2601.016282 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.32903 -37.85534 -35.42968 -34.43243 -32.19436 -30.53614 -29.28295 -28.38102 -25.88787 -24.95791 -22.88562 -21.80657 -21.32031 -20.82080 -18.48899 -17.39021 -17.03246 -16.57620 -16.13791 -15.58743 -15.14243 -14.87735 -14.65252 -14.43359 -13.86596 -13.53324 -13.51785 -13.34542 -13.25248 -12.98611 -12.81883 -12.63400 -12.56665 -12.39262 -12.23696 -12.05256 -11.99499 -11.78758 -11.55664 -11.48168 -11.18690 -10.98682 -10.57561 -9.42430 -9.15074 -8.19598 -6.29769 1.38288 1.39769 1.47531 2.39064 2.90957 3.13396 3.46751 3.72898 3.86923 4.03760 4.14459 4.19662 4.32385 4.38669 4.48453 4.51105 4.61282 4.67477 4.72591 4.75397 4.79859 4.87005 4.90064 4.96236 5.03502 5.13662 5.16164 5.20092 5.24223 5.30287 5.35288 5.42536 5.50344 5.56847 5.84563 5.87050 6.11142 6.21456 6.44517 6.63559 6.85497 7.38830 8.92010 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024481 B = 0.005478 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.475323 B = 5109.937547 C = 5944.478123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C 0.045 3.955 4 N -0.522 5.522 5 C 0.047 3.953 6 C -0.162 4.162 7 C 0.088 3.912 8 H 0.086 0.914 9 N -0.676 5.676 10 C 0.098 3.902 11 H 0.026 0.974 12 C -0.128 4.128 13 C 0.028 3.972 14 C -0.533 4.533 15 H 0.058 0.942 16 C 0.006 3.994 17 N -0.931 5.931 18 Si 0.957 3.043 19 H -0.267 1.267 20 H -0.285 1.285 21 H -0.270 1.270 22 C 0.054 3.946 23 H 0.051 0.949 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.030 0.970 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.342 0.658 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.052 0.948 38 H -0.006 1.006 39 H -0.004 1.004 40 H 0.263 0.737 41 H 0.089 0.911 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.531 -12.435 7.983 19.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.083 4.083 4 N -0.246 5.246 5 C -0.081 4.081 6 C -0.202 4.202 7 C -0.023 4.023 8 H 0.104 0.896 9 N -0.308 5.308 10 C -0.011 4.011 11 H 0.044 0.956 12 C -0.186 4.186 13 C -0.010 4.010 14 C -0.571 4.571 15 H 0.077 0.923 16 C -0.193 4.193 17 N -0.571 5.571 18 Si 0.782 3.218 19 H -0.192 1.192 20 H -0.211 1.211 21 H -0.195 1.195 22 C -0.074 4.074 23 H 0.070 0.930 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.162 0.838 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.013 0.987 39 H 0.015 0.985 40 H 0.071 0.929 41 H 0.107 0.893 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -12.325 -12.334 8.952 19.600 hybrid contribution 0.030 0.269 -2.618 2.632 sum -12.295 -12.065 6.334 18.354 Atomic orbital electron populations 1.21721 0.94555 1.02336 1.01991 1.21446 0.96201 0.95235 1.02324 1.22397 0.86722 0.98244 1.00919 1.64779 1.08661 1.20298 1.30907 1.22749 0.94900 1.00195 0.90283 1.23142 0.98489 0.99529 0.98991 1.22481 0.96121 0.87904 0.95805 0.89572 1.60579 1.06976 1.27176 1.36021 1.21389 0.87346 0.97081 0.95318 0.95644 1.21723 0.99553 1.01445 0.95882 1.19129 0.94726 0.93978 0.93126 1.21502 1.35352 1.06782 0.93422 0.92346 1.25864 0.95245 0.94858 1.03290 1.70089 1.40853 1.13693 1.32439 0.85624 0.78995 0.77949 0.79215 1.19234 1.21067 1.19502 1.23054 0.93813 0.89154 1.01412 0.92962 0.91695 0.92173 0.92501 0.91350 0.90256 0.95214 0.93924 0.89613 0.92770 0.91294 0.83769 0.93191 0.92010 0.92941 0.98735 0.98518 0.92856 0.89278 0.94206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 71.98 0.71 -1.34 16 2 C -0.11 -1.97 5.99 30.60 0.18 -1.78 16 3 C 0.05 0.93 4.76 86.30 0.41 1.34 16 4 N -0.52 -12.83 5.27 -882.98 -4.65 -17.48 16 5 C 0.05 1.18 5.79 86.44 0.50 1.68 16 6 C -0.16 -4.84 6.46 31.47 0.20 -4.63 16 7 C 0.09 2.73 3.13 46.12 0.14 2.88 16 8 H 0.09 2.65 7.22 -2.39 -0.02 2.63 16 9 N -0.68 -25.49 6.16 -463.30 -2.86 -28.34 16 10 C 0.10 4.06 2.47 44.91 0.11 4.17 16 11 H 0.03 1.07 7.75 -2.39 -0.02 1.05 16 12 C -0.13 -4.52 9.40 71.98 0.68 -3.84 16 13 C 0.03 1.45 4.57 29.85 0.14 1.59 16 14 C -0.53 -29.28 8.12 25.60 0.21 -29.07 16 15 H 0.06 3.07 7.47 -2.91 -0.02 3.04 16 16 C 0.01 0.32 5.46 84.66 0.46 0.78 16 17 N -0.93 -56.25 13.29 21.45 0.28 -55.96 16 18 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 20 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 22 C 0.05 1.47 6.22 86.65 0.54 2.01 16 23 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.06 1.02 7.52 -2.39 -0.02 1.00 16 27 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 28 H 0.08 1.53 8.11 -2.39 -0.02 1.51 16 29 H 0.03 0.65 7.82 -2.38 -0.02 0.63 16 30 H 0.04 1.06 7.57 -2.39 -0.02 1.04 16 31 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.05 1.84 7.58 -2.39 -0.02 1.82 16 33 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.34 14.34 6.65 -89.70 -0.60 13.74 16 35 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.06 1.87 7.45 -2.39 -0.02 1.86 16 37 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 38 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 39 H 0.00 -0.21 8.14 -2.39 -0.02 -0.22 16 40 H 0.26 15.02 8.31 -92.70 -0.77 14.25 16 41 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.04 1.15 8.02 -2.39 -0.02 1.13 16 Total: -1.00 -59.78 328.89 -0.55 -60.34 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.35 Total: 21.87 kcal Atomic # 6 Polarization: -30.51 SS G_CDS: 4.29 Total: -26.22 kcal Atomic # 7 Polarization: -94.57 SS G_CDS: -7.22 Total: -101.79 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -59.78 -0.55 -60.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829187893.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.790 kcal (2) G-P(sol) polarization free energy of solvation -59.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds