Wall clock time and date at job start Mon Mar 30 2020 03:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47063 * 2 1 4 4 C 1.52998 * 109.47242 * 120.00025 * 2 1 3 5 5 N 1.46897 * 109.47108 * 175.06962 * 4 2 1 6 6 C 1.46962 * 110.99605 * 284.93069 * 5 4 2 7 7 C 1.53059 * 109.35980 * 176.81631 * 6 5 4 8 8 H 1.09005 * 109.48354 * 178.37072 * 7 6 5 9 9 C 1.53006 * 109.48543 * 298.43251 * 7 6 5 10 10 N 1.46950 * 109.36737 * 58.40019 * 7 6 5 11 11 C 1.46895 * 111.00211 * 176.80873 * 10 7 6 12 12 C 1.46960 * 110.88182 * 300.68072 * 10 7 6 13 13 H 1.08999 * 109.48649 * 299.32744 * 12 10 7 14 14 C 1.50700 * 109.48858 * 179.28888 * 12 10 7 15 15 H 1.08005 * 120.00034 * 354.55880 * 14 12 10 16 16 C 1.37869 * 119.99944 * 174.56136 * 14 12 10 17 17 N 1.31517 * 119.99977 * 171.61826 * 16 14 12 18 18 Si 1.86798 * 120.00083 * 351.33891 * 16 14 12 19 19 H 1.48499 * 109.47122 * 94.97571 * 18 16 14 20 20 H 1.48500 * 109.47341 * 214.97522 * 18 16 14 21 21 H 1.48506 * 109.47167 * 334.97578 * 18 16 14 22 22 C 1.46968 * 110.99750 * 161.11258 * 5 4 2 23 23 H 1.09001 * 109.47327 * 300.00121 * 1 2 3 24 24 H 1.09002 * 109.47295 * 60.00516 * 1 2 3 25 25 H 1.09007 * 109.46866 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47327 * 239.99879 * 2 1 3 27 27 H 1.08994 * 109.47316 * 185.01851 * 3 2 1 28 28 H 1.09002 * 109.46927 * 305.01808 * 3 2 1 29 29 H 1.08995 * 109.46821 * 65.01159 * 3 2 1 30 30 H 1.08998 * 109.47292 * 55.06325 * 4 2 1 31 31 H 1.09009 * 109.46793 * 295.06727 * 4 2 1 32 32 H 1.08991 * 109.48766 * 56.85136 * 6 5 4 33 33 H 1.09003 * 109.50732 * 296.78737 * 6 5 4 34 34 H 1.09003 * 109.46421 * 179.89516 * 9 7 6 35 35 H 1.09002 * 109.47123 * 299.89036 * 9 7 6 36 36 H 1.08997 * 109.46826 * 59.89737 * 9 7 6 37 37 H 1.08994 * 109.47675 * 183.79873 * 11 10 7 38 38 H 1.09003 * 109.47414 * 303.80531 * 11 10 7 39 39 H 1.09003 * 109.46964 * 63.80017 * 11 10 7 40 40 H 0.97003 * 120.00048 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.47289 * 63.20860 * 22 5 4 42 42 H 1.08994 * 109.50343 * 303.13762 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5041 -0.8252 1.1911 6 6 3.9211 -1.8573 0.2317 7 6 5.4490 -1.8794 0.1423 8 1 5.7615 -2.6638 -0.5471 9 6 5.9502 -0.5251 -0.3635 10 7 6.0113 -2.1441 1.4739 11 6 7.4754 -2.2482 1.4159 12 6 5.5942 -1.1120 2.4333 13 1 5.9534 -0.1386 2.0992 14 6 6.1730 -1.4230 3.7895 15 1 6.7151 -2.3437 3.9471 16 6 6.0104 -0.5322 4.8291 17 7 6.3679 -0.8720 6.0483 18 14 5.2895 1.1603 4.5048 19 1 3.8279 1.1342 4.7662 20 1 5.9349 2.1533 5.4007 21 1 5.5325 1.5390 3.0895 22 6 4.0666 -1.0895 2.5230 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1262 1.4439 -0.0899 28 1 1.6051 1.9816 -0.8416 29 1 1.7518 1.9297 0.9314 30 1 1.6063 -1.7202 1.2946 31 1 1.7506 -0.1588 2.1370 32 1 3.5027 -1.6324 -0.7492 33 1 3.5624 -2.8310 0.5657 34 1 7.0384 -0.5406 -0.4253 35 1 5.5329 -0.3291 -1.3512 36 1 5.6365 0.2588 0.3257 37 1 7.8604 -2.5109 2.4011 38 1 7.7568 -3.0191 0.6984 39 1 7.8956 -1.2917 1.1048 40 1 6.2538 -0.2451 6.7797 41 1 3.7092 -2.0540 2.8835 42 1 3.7543 -0.3048 3.2121 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251623100.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:00 Heat of formation + Delta-G solvation = 6.185519 kcal Electronic energy + Delta-G solvation = -19077.213638 eV Core-core repulsion = 16478.093699 eV Total energy + Delta-G solvation = -2599.119939 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.23173 -36.48983 -33.51325 -33.07629 -30.97466 -28.52577 -26.98354 -26.42063 -25.29289 -24.45426 -21.94448 -21.49075 -19.57419 -17.86864 -16.94670 -15.84144 -15.14851 -14.52941 -14.41196 -14.12339 -13.83976 -13.59475 -13.50660 -13.24655 -12.49479 -12.33480 -12.18125 -12.05484 -11.61282 -11.54894 -11.41012 -11.14948 -10.98751 -10.82712 -10.70147 -10.51692 -10.42958 -10.38118 -10.13210 -9.83193 -9.57290 -9.03196 -8.57285 -7.72841 -7.22160 -6.09743 -4.07765 3.26097 3.37026 3.43932 4.37945 4.42752 4.85262 4.98442 5.11811 5.22269 5.32110 5.40608 5.62838 5.69150 5.70276 5.76764 5.81033 5.97197 6.00169 6.00950 6.04511 6.12198 6.20634 6.22906 6.25239 6.32748 6.39854 6.47823 6.52376 6.52933 6.60414 6.71814 6.79621 6.94946 7.27783 7.44376 7.64499 7.77358 7.98329 8.14274 8.66837 8.99074 9.53113 11.02494 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020497 B = 0.010147 C = 0.007841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.736990 B = 2758.872972 C = 3570.317611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.136 4.136 4 C 0.057 3.943 5 N -0.541 5.541 6 C 0.068 3.932 7 C 0.079 3.921 8 H 0.071 0.929 9 C -0.175 4.175 10 N -0.527 5.527 11 C 0.038 3.962 12 C 0.188 3.812 13 H 0.016 0.984 14 C -0.507 4.507 15 H 0.082 0.918 16 C 0.074 3.926 17 N -0.895 5.895 18 Si 0.868 3.132 19 H -0.278 1.278 20 H -0.291 1.291 21 H -0.258 1.258 22 C 0.062 3.938 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.042 0.958 29 H 0.047 0.953 30 H 0.030 0.970 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.034 0.966 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.043 0.957 39 H 0.016 0.984 40 H 0.264 0.736 41 H 0.038 0.962 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.379 1.617 -12.813 14.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 C -0.193 4.193 4 C -0.071 4.071 5 N -0.265 5.265 6 C -0.060 4.060 7 C -0.030 4.030 8 H 0.089 0.911 9 C -0.234 4.234 10 N -0.251 5.251 11 C -0.110 4.110 12 C 0.080 3.920 13 H 0.033 0.967 14 C -0.546 4.546 15 H 0.100 0.900 16 C -0.129 4.129 17 N -0.533 5.533 18 Si 0.696 3.304 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.182 1.182 22 C -0.066 4.066 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.062 0.938 39 H 0.035 0.965 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.356 1.671 -12.598 14.684 hybrid contribution -0.471 0.947 0.066 1.060 sum -7.827 2.618 -12.532 15.006 Atomic orbital electron populations 1.21826 0.95748 1.01313 1.01486 1.21088 0.94416 0.97101 0.98317 1.21694 1.02212 0.95015 1.00404 1.22163 0.88603 0.98467 0.97880 1.62235 1.07978 1.46399 1.09893 1.22081 0.95030 0.93093 0.95820 1.21711 0.93887 0.95514 0.91901 0.91124 1.22328 1.00094 1.00066 1.00902 1.62261 1.09339 1.48244 1.05265 1.22197 0.88240 0.98310 1.02262 1.19763 0.90171 0.89883 0.92161 0.96688 1.20981 1.34957 1.06903 0.91757 0.89961 1.24906 0.95047 0.98050 0.94849 1.69912 1.48300 1.35677 0.99414 0.87010 0.79118 0.85180 0.79087 1.20459 1.21819 1.18223 1.22688 0.97499 0.99185 0.87213 0.92822 0.92894 0.93040 0.91453 0.91507 0.93925 0.93352 0.95133 0.91444 0.91489 0.94741 0.93484 0.93511 0.90969 0.90170 0.93781 0.96502 0.92628 0.94380 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.19 37.16 0.34 -1.24 16 2 C -0.09 -1.17 2.97 -90.62 -0.27 -1.44 16 3 C -0.14 -1.81 9.02 37.16 0.34 -1.47 16 4 C 0.06 0.89 4.38 -3.83 -0.02 0.88 16 5 N -0.54 -9.86 3.50 -234.46 -0.82 -10.68 16 6 C 0.07 1.13 4.86 -3.76 -0.02 1.12 16 7 C 0.08 1.39 2.97 -67.65 -0.20 1.19 16 8 H 0.07 1.12 8.13 -51.93 -0.42 0.69 16 9 C -0.18 -2.93 8.37 37.16 0.31 -2.62 16 10 N -0.53 -11.10 4.73 -228.14 -1.08 -12.18 16 11 C 0.04 0.75 8.83 60.06 0.53 1.28 16 12 C 0.19 4.46 1.14 -68.81 -0.08 4.38 16 13 H 0.02 0.39 4.68 -51.93 -0.24 0.15 16 14 C -0.51 -14.06 8.27 -34.44 -0.28 -14.34 16 15 H 0.08 2.49 6.93 -52.48 -0.36 2.12 16 16 C 0.07 2.10 5.41 -17.82 -0.10 2.01 16 17 N -0.90 -27.03 13.96 55.43 0.77 -26.25 16 18 Si 0.87 21.58 25.06 -169.99 -4.26 17.32 16 19 H -0.28 -6.77 6.96 56.52 0.39 -6.37 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 21 H -0.26 -6.28 6.23 56.52 0.35 -5.93 16 22 C 0.06 1.36 4.48 -3.76 -0.02 1.35 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.53 8.14 -51.92 -0.42 0.10 16 26 H 0.07 0.86 6.70 -51.93 -0.35 0.51 16 27 H 0.07 1.00 7.89 -51.93 -0.41 0.59 16 28 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.03 0.47 8.01 -51.93 -0.42 0.05 16 31 H 0.07 1.10 7.86 -51.92 -0.41 0.70 16 32 H 0.07 0.96 6.68 -51.93 -0.35 0.62 16 33 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.77 6.56 -51.93 -0.34 0.43 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 1.39 5.94 -51.93 -0.31 1.08 16 37 H 0.08 1.73 6.38 -51.93 -0.33 1.40 16 38 H 0.04 0.74 8.13 -51.93 -0.42 0.31 16 39 H 0.02 0.32 6.58 -51.93 -0.34 -0.02 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.06 1.45 4.63 -51.93 -0.24 1.21 16 LS Contribution 305.99 15.07 4.61 4.61 Total: -1.00 -28.97 305.99 -7.75 -36.72 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -7.52 Total: -0.63 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 0.54 Total: -8.91 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: -1.13 Total: -49.11 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.26 Total: 17.32 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.97 -7.75 -36.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251623100.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.907 kcal (2) G-P(sol) polarization free energy of solvation -28.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds