Wall clock time and date at job start Mon Mar 30 2020 03:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47063 * 2 1 4 4 C 1.52998 * 109.47242 * 120.00025 * 2 1 3 5 5 N 1.46897 * 109.47108 * 175.06962 * 4 2 1 6 6 C 1.46962 * 110.99605 * 284.93069 * 5 4 2 7 7 C 1.53059 * 109.35980 * 176.81631 * 6 5 4 8 8 H 1.09005 * 109.48354 * 178.37072 * 7 6 5 9 9 C 1.53006 * 109.48543 * 298.43251 * 7 6 5 10 10 N 1.46950 * 109.36737 * 58.40019 * 7 6 5 11 11 C 1.46895 * 111.00211 * 176.80873 * 10 7 6 12 12 C 1.46960 * 110.88182 * 300.68072 * 10 7 6 13 13 H 1.08999 * 109.48649 * 299.32744 * 12 10 7 14 14 C 1.50700 * 109.48858 * 179.28888 * 12 10 7 15 15 H 1.08005 * 120.00034 * 354.55880 * 14 12 10 16 16 C 1.37869 * 119.99944 * 174.56136 * 14 12 10 17 17 N 1.31517 * 119.99977 * 171.61826 * 16 14 12 18 18 Si 1.86798 * 120.00083 * 351.33891 * 16 14 12 19 19 H 1.48499 * 109.47122 * 94.97571 * 18 16 14 20 20 H 1.48500 * 109.47341 * 214.97522 * 18 16 14 21 21 H 1.48506 * 109.47167 * 334.97578 * 18 16 14 22 22 C 1.46968 * 110.99750 * 161.11258 * 5 4 2 23 23 H 1.09001 * 109.47327 * 300.00121 * 1 2 3 24 24 H 1.09002 * 109.47295 * 60.00516 * 1 2 3 25 25 H 1.09007 * 109.46866 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47327 * 239.99879 * 2 1 3 27 27 H 1.08994 * 109.47316 * 185.01851 * 3 2 1 28 28 H 1.09002 * 109.46927 * 305.01808 * 3 2 1 29 29 H 1.08995 * 109.46821 * 65.01159 * 3 2 1 30 30 H 1.08998 * 109.47292 * 55.06325 * 4 2 1 31 31 H 1.09009 * 109.46793 * 295.06727 * 4 2 1 32 32 H 1.08991 * 109.48766 * 56.85136 * 6 5 4 33 33 H 1.09003 * 109.50732 * 296.78737 * 6 5 4 34 34 H 1.09003 * 109.46421 * 179.89516 * 9 7 6 35 35 H 1.09002 * 109.47123 * 299.89036 * 9 7 6 36 36 H 1.08997 * 109.46826 * 59.89737 * 9 7 6 37 37 H 1.08994 * 109.47675 * 183.79873 * 11 10 7 38 38 H 1.09003 * 109.47414 * 303.80531 * 11 10 7 39 39 H 1.09003 * 109.46964 * 63.80017 * 11 10 7 40 40 H 0.97003 * 120.00048 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.47289 * 63.20860 * 22 5 4 42 42 H 1.08994 * 109.50343 * 303.13762 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5041 -0.8252 1.1911 6 6 3.9211 -1.8573 0.2317 7 6 5.4490 -1.8794 0.1423 8 1 5.7615 -2.6638 -0.5471 9 6 5.9502 -0.5251 -0.3635 10 7 6.0113 -2.1441 1.4739 11 6 7.4754 -2.2482 1.4159 12 6 5.5942 -1.1120 2.4333 13 1 5.9534 -0.1386 2.0992 14 6 6.1730 -1.4230 3.7895 15 1 6.7151 -2.3437 3.9471 16 6 6.0104 -0.5322 4.8291 17 7 6.3679 -0.8720 6.0483 18 14 5.2895 1.1603 4.5048 19 1 3.8279 1.1342 4.7662 20 1 5.9349 2.1533 5.4007 21 1 5.5325 1.5390 3.0895 22 6 4.0666 -1.0895 2.5230 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1262 1.4439 -0.0899 28 1 1.6051 1.9816 -0.8416 29 1 1.7518 1.9297 0.9314 30 1 1.6063 -1.7202 1.2946 31 1 1.7506 -0.1588 2.1370 32 1 3.5027 -1.6324 -0.7492 33 1 3.5624 -2.8310 0.5657 34 1 7.0384 -0.5406 -0.4253 35 1 5.5329 -0.3291 -1.3512 36 1 5.6365 0.2588 0.3257 37 1 7.8604 -2.5109 2.4011 38 1 7.7568 -3.0191 0.6984 39 1 7.8956 -1.2917 1.1048 40 1 6.2538 -0.2451 6.7797 41 1 3.7092 -2.0540 2.8835 42 1 3.7543 -0.3048 3.2121 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251623100.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:00 Heat of formation + Delta-G solvation = -13.910703 kcal Electronic energy + Delta-G solvation = -19078.085076 eV Core-core repulsion = 16478.093699 eV Total energy + Delta-G solvation = -2599.991377 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.76075 -37.78048 -35.09143 -34.81404 -32.77637 -30.11954 -27.92818 -27.74220 -27.16028 -25.92539 -23.53237 -23.11568 -20.73565 -19.47299 -19.01394 -17.41102 -16.52141 -16.11776 -15.89594 -15.78433 -15.31515 -15.08946 -14.94246 -14.59745 -14.35398 -13.71758 -13.50853 -13.20275 -13.05881 -12.94626 -12.81917 -12.71520 -12.56269 -12.29869 -12.17206 -11.95340 -11.79158 -11.70269 -11.68892 -11.52998 -11.20097 -10.89021 -10.75155 -9.20511 -8.88496 -8.32066 -6.33603 1.25974 1.31856 1.43810 2.28687 2.91733 3.12469 3.28992 3.87574 3.99086 4.11872 4.28281 4.29496 4.35238 4.46577 4.55973 4.57916 4.66216 4.67648 4.75298 4.83705 4.85850 4.88099 4.88538 4.95015 5.08097 5.08678 5.10988 5.15518 5.22510 5.29331 5.30336 5.48352 5.52958 5.56544 5.63290 6.01525 6.16022 6.19951 6.46601 6.72693 6.76907 7.31404 8.84016 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020497 B = 0.010147 C = 0.007841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.736990 B = 2758.872972 C = 3570.317611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.083 4.083 3 C -0.134 4.134 4 C 0.055 3.945 5 N -0.540 5.540 6 C 0.069 3.931 7 C 0.075 3.925 8 H 0.098 0.902 9 C -0.166 4.166 10 N -0.545 5.545 11 C 0.043 3.957 12 C 0.198 3.802 13 H 0.004 0.996 14 C -0.508 4.508 15 H 0.043 0.957 16 C 0.022 3.978 17 N -0.942 5.942 18 Si 0.929 3.071 19 H -0.269 1.269 20 H -0.289 1.289 21 H -0.249 1.249 22 C 0.073 3.927 23 H 0.050 0.950 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.077 0.923 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.038 0.962 30 H 0.035 0.965 31 H 0.055 0.945 32 H 0.101 0.899 33 H 0.028 0.972 34 H 0.047 0.953 35 H 0.076 0.924 36 H 0.043 0.957 37 H 0.047 0.953 38 H 0.077 0.923 39 H 0.019 0.981 40 H 0.266 0.734 41 H 0.017 0.983 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.958 2.388 -15.884 18.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.102 4.102 3 C -0.192 4.192 4 C -0.073 4.073 5 N -0.264 5.264 6 C -0.059 4.059 7 C -0.034 4.034 8 H 0.115 0.885 9 C -0.225 4.225 10 N -0.269 5.269 11 C -0.105 4.105 12 C 0.089 3.911 13 H 0.022 0.978 14 C -0.547 4.547 15 H 0.061 0.939 16 C -0.176 4.176 17 N -0.582 5.582 18 Si 0.755 3.245 19 H -0.194 1.194 20 H -0.216 1.216 21 H -0.173 1.173 22 C -0.056 4.056 23 H 0.069 0.931 24 H 0.088 0.912 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.119 0.881 33 H 0.046 0.954 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.037 0.963 40 H 0.075 0.925 41 H 0.035 0.965 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.945 2.435 -15.702 18.234 hybrid contribution 0.055 0.599 0.978 1.148 sum -8.890 3.034 -14.724 17.465 Atomic orbital electron populations 1.21788 0.93893 1.02021 1.02235 1.21055 0.95856 0.96413 0.96849 1.21675 1.01085 0.95515 1.00886 1.22284 0.86830 0.99030 0.99168 1.62218 1.09676 1.46869 1.07667 1.22194 0.94609 0.92334 0.96795 1.21922 0.94336 0.96967 0.90142 0.88454 1.22219 1.00247 0.98364 1.01638 1.62197 1.10165 1.47384 1.07127 1.22133 0.87619 0.99429 1.01330 1.19470 0.91005 0.89977 0.90625 0.97833 1.21213 1.34143 1.05242 0.94062 0.93914 1.25641 0.95712 1.01738 0.94483 1.70043 1.50436 1.37198 1.00491 0.86030 0.78764 0.80505 0.79221 1.19430 1.21589 1.17330 1.22307 0.96441 0.97456 0.89367 0.93107 0.91156 0.92399 0.90471 0.93356 0.91756 0.94277 0.94647 0.92672 0.88061 0.95395 0.93394 0.90557 0.93755 0.93444 0.90452 0.96298 0.92475 0.96511 0.93530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.19 71.98 0.66 -1.90 16 2 C -0.08 -1.87 2.97 -10.79 -0.03 -1.90 16 3 C -0.13 -3.18 9.02 71.98 0.65 -2.53 16 4 C 0.05 1.60 4.38 86.30 0.38 1.98 16 5 N -0.54 -18.77 3.50 -895.69 -3.14 -21.91 16 6 C 0.07 2.08 4.86 86.31 0.42 2.50 16 7 C 0.07 2.41 2.97 44.93 0.13 2.54 16 8 H 0.10 2.66 8.13 -2.38 -0.02 2.65 16 9 C -0.17 -5.05 8.37 71.98 0.60 -4.45 16 10 N -0.54 -22.61 4.73 -875.70 -4.14 -26.75 16 11 C 0.04 1.67 8.83 127.69 1.13 2.80 16 12 C 0.20 9.46 1.14 44.17 0.05 9.51 16 13 H 0.00 0.21 4.68 -2.39 -0.01 0.20 16 14 C -0.51 -29.26 8.27 25.60 0.21 -29.05 16 15 H 0.04 2.74 6.93 -2.91 -0.02 2.72 16 16 C 0.02 1.32 5.41 84.65 0.46 1.78 16 17 N -0.94 -58.98 13.96 21.44 0.30 -58.69 16 18 Si 0.93 45.49 25.06 68.60 1.72 47.21 16 19 H -0.27 -12.64 6.96 99.48 0.69 -11.95 16 20 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 21 H -0.25 -11.77 6.23 99.48 0.62 -11.15 16 22 C 0.07 3.23 4.48 86.31 0.39 3.61 16 23 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 26 H 0.08 1.61 6.70 -2.39 -0.02 1.60 16 27 H 0.05 1.32 7.89 -2.39 -0.02 1.30 16 28 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.04 1.00 8.01 -2.39 -0.02 0.98 16 31 H 0.05 1.74 7.86 -2.38 -0.02 1.72 16 32 H 0.10 2.43 6.68 -2.39 -0.02 2.41 16 33 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.05 1.43 6.56 -2.39 -0.02 1.42 16 35 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.04 1.61 5.94 -2.39 -0.01 1.60 16 37 H 0.05 2.12 6.38 -2.39 -0.02 2.11 16 38 H 0.08 2.45 8.13 -2.39 -0.02 2.43 16 39 H 0.02 0.71 6.58 -2.39 -0.02 0.69 16 40 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 41 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.05 2.18 4.63 -2.39 -0.01 2.17 16 Total: -1.00 -64.79 305.99 0.65 -64.14 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 0.86 Total: 11.10 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: 5.05 Total: -15.11 kcal Atomic # 7 Polarization: -100.36 SS G_CDS: -6.98 Total: -107.34 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.72 Total: 47.21 kcal Total: -64.79 0.65 -64.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251623100.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.224 kcal (2) G-P(sol) polarization free energy of solvation -64.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds