Wall clock time and date at job start Mon Mar 30 2020 03:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46831 * 2 1 4 4 N 1.46893 * 109.47441 * 120.00424 * 2 1 3 5 5 C 1.47742 * 111.00114 * 302.40101 * 4 2 1 6 6 C 1.50777 * 111.91024 * 192.80516 * 5 4 2 7 7 H 1.09002 * 109.73990 * 334.91685 * 6 5 4 8 8 C 1.50698 * 109.74265 * 214.26234 * 6 5 4 9 9 H 1.07999 * 120.00135 * 274.91538 * 8 6 5 10 10 C 1.37877 * 119.99778 * 94.91195 * 8 6 5 11 11 N 1.31509 * 120.00114 * 0.85132 * 10 8 6 12 12 Si 1.86800 * 119.99967 * 180.85567 * 10 8 6 13 13 H 1.48504 * 109.47024 * 270.00211 * 12 10 8 14 14 H 1.48500 * 109.47247 * 29.99708 * 12 10 8 15 15 H 1.48499 * 109.47594 * 149.99873 * 12 10 8 16 16 N 1.47694 * 108.09547 * 94.61025 * 6 5 4 17 17 C 1.46905 * 110.99661 * 151.98689 * 16 6 5 18 18 C 1.40077 * 114.57116 * 278.68500 * 16 6 5 19 19 C 1.54517 * 111.50829 * 61.45276 * 18 16 6 20 20 C 1.48063 * 111.00339 * 174.79546 * 4 2 1 21 21 H 1.08994 * 108.79159 * 205.24268 * 20 4 2 22 22 C 1.53002 * 108.78956 * 323.57372 * 20 4 2 23 23 H 1.08999 * 109.46776 * 299.99232 * 1 2 3 24 24 H 1.08993 * 109.47598 * 59.99405 * 1 2 3 25 25 H 1.08998 * 109.47167 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46776 * 240.00768 * 2 1 3 27 27 H 1.09009 * 109.46825 * 187.54171 * 3 2 1 28 28 H 1.08996 * 109.47808 * 307.54378 * 3 2 1 29 29 H 1.09000 * 109.47260 * 67.55102 * 3 2 1 30 30 H 1.09001 * 108.99993 * 72.18042 * 5 4 2 31 31 H 1.09007 * 108.92890 * 313.38743 * 5 4 2 32 32 H 0.96996 * 120.00642 * 354.44041 * 11 10 8 33 33 H 1.09002 * 109.47173 * 52.77610 * 17 16 6 34 34 H 1.08997 * 109.46452 * 172.77435 * 17 16 6 35 35 H 1.09002 * 109.46971 * 292.77563 * 17 16 6 36 36 H 1.08998 * 109.07491 * 300.92397 * 18 16 6 37 37 H 1.09003 * 109.06851 * 181.96904 * 18 16 6 38 38 H 1.08997 * 109.55873 * 164.15515 * 19 18 16 39 39 H 1.09001 * 109.56025 * 43.82810 * 19 18 16 40 40 H 1.09006 * 109.47119 * 66.95502 * 22 20 4 41 41 H 1.08999 * 109.47131 * 186.95313 * 22 20 4 42 42 H 1.08997 * 109.46950 * 306.95867 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6925 1.1993 5 6 1.4995 -0.0569 2.4273 6 6 2.2197 -0.5415 3.6602 7 1 2.6366 -1.5319 3.4776 8 6 1.2600 -0.5995 4.8206 9 1 1.0709 0.2857 5.4098 10 6 0.6232 -1.7826 5.1300 11 7 0.8660 -2.8645 4.4229 12 14 -0.5846 -1.8487 6.5535 13 1 0.1398 -2.2006 7.8013 14 1 -1.2327 -0.5224 6.7148 15 1 -1.6208 -2.8756 6.2763 16 7 3.3078 0.4111 3.9600 17 6 3.6110 0.4286 5.3973 18 6 4.4717 0.2228 3.2037 19 6 4.2012 0.4037 1.6931 20 6 3.4945 -0.8218 1.1725 21 1 3.7830 -1.6787 1.7812 22 6 3.9413 -1.0701 -0.2697 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8898 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5137 -0.8901 27 1 3.1217 1.4455 -0.1349 28 1 1.5707 1.9938 -0.8148 29 1 1.7911 1.9159 0.9498 30 1 0.4382 -0.2863 2.5234 31 1 1.6228 1.0231 2.3459 32 1 1.4298 -2.8129 3.6354 33 1 3.7956 -0.5889 5.7421 34 1 4.4968 1.0386 5.5743 35 1 2.7655 0.8490 5.9419 36 1 4.8518 -0.7835 3.3795 37 1 5.2230 0.9463 3.5201 38 1 5.1466 0.5313 1.1659 39 1 3.5733 1.2809 1.5373 40 1 3.7433 -0.1817 -0.8694 41 1 5.0088 -1.2895 -0.2866 42 1 3.3898 -1.9159 -0.6803 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251703725.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:47 Heat of formation + Delta-G solvation = 2.483134 kcal Electronic energy + Delta-G solvation = -19536.552867 eV Core-core repulsion = 16937.272380 eV Total energy + Delta-G solvation = -2599.280487 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.30064 -38.15927 -35.50436 -34.10386 -32.26719 -30.31342 -28.91923 -28.06306 -26.48529 -25.43987 -24.21259 -22.20034 -21.69078 -19.52152 -18.59053 -17.41989 -16.73758 -16.41595 -16.15871 -15.61300 -15.47591 -15.14850 -14.48399 -14.08827 -13.92655 -13.88249 -13.49240 -13.19189 -13.14204 -12.87287 -12.69753 -12.56593 -12.48329 -12.36350 -12.25058 -12.19006 -11.93561 -11.76709 -11.43767 -11.24953 -11.08072 -10.54800 -10.48964 -8.92867 -8.90201 -8.55862 -6.29911 1.52065 1.60554 1.77929 2.56282 3.04703 3.16285 3.40653 3.85372 3.97806 4.02518 4.22282 4.25787 4.40519 4.46283 4.51983 4.58653 4.60898 4.71698 4.73999 4.77063 4.78183 4.84407 4.89428 4.95857 4.98728 5.00492 5.07853 5.11857 5.23847 5.25726 5.34144 5.41615 5.47126 5.60892 5.94010 6.06090 6.36197 6.47876 6.52597 6.60462 6.97785 7.52349 8.80854 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023830 B = 0.009663 C = 0.008030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.713498 B = 2896.995337 C = 3486.010480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.072 3.928 3 C -0.183 4.183 4 N -0.556 5.556 5 C 0.098 3.902 6 C 0.209 3.791 7 H -0.013 1.013 8 C -0.596 4.596 9 H 0.051 0.949 10 C -0.025 4.025 11 N -0.935 5.935 12 Si 1.113 2.887 13 H -0.276 1.276 14 H -0.269 1.269 15 H -0.287 1.287 16 N -0.566 5.566 17 C 0.064 3.936 18 C 0.073 3.927 19 C -0.144 4.144 20 C 0.085 3.915 21 H 0.032 0.968 22 C -0.143 4.143 23 H 0.036 0.964 24 H 0.081 0.919 25 H 0.044 0.956 26 H 0.097 0.903 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.042 0.958 30 H 0.036 0.964 31 H 0.034 0.966 32 H 0.260 0.740 33 H -0.006 1.006 34 H 0.068 0.932 35 H 0.058 0.942 36 H -0.013 1.013 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.087 7.747 -8.684 12.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.036 4.036 3 C -0.241 4.241 4 N -0.282 5.282 5 C -0.030 4.030 6 C 0.102 3.898 7 H 0.004 0.996 8 C -0.635 4.635 9 H 0.070 0.930 10 C -0.225 4.225 11 N -0.572 5.572 12 Si 0.935 3.065 13 H -0.202 1.202 14 H -0.194 1.194 15 H -0.212 1.212 16 N -0.291 5.291 17 C -0.083 4.083 18 C -0.057 4.057 19 C -0.183 4.183 20 C -0.023 4.023 21 H 0.051 0.949 22 C -0.200 4.200 23 H 0.055 0.945 24 H 0.100 0.900 25 H 0.063 0.937 26 H 0.115 0.885 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.013 0.987 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.004 0.996 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.803 6.686 -7.964 11.072 hybrid contribution 1.471 0.577 -0.290 1.606 sum 5.274 7.264 -8.254 12.194 Atomic orbital electron populations 1.21835 0.95082 1.01340 1.01611 1.21856 0.95284 0.93022 0.93438 1.22639 1.02070 0.97621 1.01767 1.62342 1.09355 1.53901 1.02554 1.21838 0.97203 0.95756 0.88167 1.19044 0.88864 0.88193 0.93660 0.99577 1.22138 1.27073 0.98506 1.15800 0.93045 1.27125 0.99710 0.91836 1.03785 1.70819 1.37954 1.30572 1.17888 0.82990 0.74404 0.76266 0.72799 1.20220 1.19430 1.21249 1.59272 1.09725 1.54123 1.05989 1.21919 1.00044 0.97848 0.88522 1.21099 0.92107 0.97436 0.95050 1.22399 1.01953 0.99585 0.94324 1.21362 0.86642 0.96432 0.97824 0.94930 1.22104 1.01418 1.02407 0.94072 0.94467 0.89987 0.93715 0.88516 0.91127 0.90728 0.93898 0.94517 0.94760 0.92907 0.98702 0.91353 0.92304 0.99551 0.90403 0.88747 0.89981 0.90529 0.90962 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.37 8.89 71.98 0.64 -3.73 16 2 C 0.07 2.21 2.43 44.92 0.11 2.32 16 3 C -0.18 -4.87 7.26 71.98 0.52 -4.34 16 4 N -0.56 -21.91 4.72 -849.29 -4.01 -25.92 16 5 C 0.10 4.53 3.72 85.42 0.32 4.85 16 6 C 0.21 10.69 1.73 43.29 0.07 10.76 16 7 H -0.01 -0.79 5.01 -2.39 -0.01 -0.80 16 8 C -0.60 -33.35 6.65 25.60 0.17 -33.18 16 9 H 0.05 2.88 6.57 -2.91 -0.02 2.86 16 10 C -0.03 -1.44 5.46 84.66 0.46 -0.98 16 11 N -0.93 -58.20 13.61 21.45 0.29 -57.91 16 12 Si 1.11 50.99 29.90 68.60 2.05 53.04 16 13 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 14 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 15 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 16 N -0.57 -25.03 4.20 -917.50 -3.85 -28.88 16 17 C 0.06 2.73 8.64 127.69 1.10 3.83 16 18 C 0.07 2.73 4.95 88.05 0.44 3.16 16 19 C -0.14 -4.57 4.25 30.38 0.13 -4.44 16 20 C 0.09 3.00 2.24 43.96 0.10 3.10 16 21 H 0.03 1.39 6.52 -2.39 -0.02 1.37 16 22 C -0.14 -3.70 7.53 71.98 0.54 -3.16 16 23 H 0.04 1.29 6.64 -2.39 -0.02 1.27 16 24 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.10 2.63 5.88 -2.39 -0.01 2.62 16 27 H 0.07 1.72 4.75 -2.38 -0.01 1.71 16 28 H 0.07 1.62 8.13 -2.39 -0.02 1.60 16 29 H 0.04 1.35 5.48 -2.39 -0.01 1.34 16 30 H 0.04 1.92 6.55 -2.39 -0.02 1.91 16 31 H 0.03 1.55 4.89 -2.38 -0.01 1.54 16 32 H 0.26 16.72 6.55 -92.71 -0.61 16.11 16 33 H -0.01 -0.27 8.07 -2.39 -0.02 -0.29 16 34 H 0.07 2.35 7.74 -2.39 -0.02 2.34 16 35 H 0.06 2.59 6.44 -2.39 -0.02 2.57 16 36 H -0.01 -0.56 7.60 -2.39 -0.02 -0.58 16 37 H 0.08 2.50 7.77 -2.39 -0.02 2.48 16 38 H 0.09 2.37 7.72 -2.39 -0.02 2.35 16 39 H 0.08 2.68 4.13 -2.39 -0.01 2.67 16 40 H 0.08 1.69 5.32 -2.38 -0.01 1.68 16 41 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.05 1.49 7.83 -2.39 -0.02 1.48 16 Total: -1.00 -64.99 291.52 0.25 -64.74 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 1.16 Total: 16.73 kcal Atomic # 6 Polarization: -26.41 SS G_CDS: 4.61 Total: -21.80 kcal Atomic # 7 Polarization: -105.14 SS G_CDS: -7.56 Total: -112.70 kcal Atomic # 14 Polarization: 50.99 SS G_CDS: 2.05 Total: 53.04 kcal Total: -64.99 0.25 -64.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251703725.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.224 kcal (2) G-P(sol) polarization free energy of solvation -64.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds