Wall clock time and date at job start Mon Mar 30 2020 03:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46904 * 109.46726 * 2 1 4 4 C 1.46848 * 110.99871 * 189.99599 * 3 2 1 5 5 C 1.53036 * 109.52289 * 185.83550 * 4 3 2 6 6 C 1.53123 * 109.28054 * 300.82250 * 5 4 3 7 7 C 1.52999 * 109.52031 * 177.56101 * 6 5 4 8 8 H 1.08996 * 109.46929 * 300.11960 * 7 6 5 9 9 C 1.52997 * 109.47317 * 60.12856 * 7 6 5 10 10 N 1.46906 * 109.46507 * 180.12819 * 7 6 5 11 11 C 1.46904 * 110.99716 * 154.99875 * 10 7 6 12 12 C 1.50700 * 109.47105 * 179.97438 * 11 10 7 13 13 H 1.08003 * 119.99636 * 0.02562 * 12 11 10 14 14 C 1.37871 * 119.99946 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00285 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99968 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47115 * 359.97438 * 16 14 12 18 18 H 1.48492 * 109.47099 * 119.99864 * 16 14 12 19 19 H 1.48503 * 109.46786 * 239.99747 * 16 14 12 20 20 C 1.53114 * 109.21110 * 57.62071 * 6 5 4 21 21 C 1.46841 * 110.99863 * 314.20532 * 3 2 1 22 22 H 1.09000 * 109.47610 * 299.99960 * 1 2 3 23 23 H 1.08996 * 109.47183 * 60.00763 * 1 2 3 24 24 H 1.09002 * 109.46844 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47354 * 239.99923 * 2 1 3 26 26 H 1.09006 * 109.47264 * 119.99342 * 2 1 3 27 27 H 1.09004 * 109.46015 * 65.82505 * 4 3 2 28 28 H 1.09001 * 109.45782 * 305.85241 * 4 3 2 29 29 H 1.09007 * 109.50297 * 180.88595 * 5 4 3 30 30 H 1.08996 * 109.53507 * 60.78279 * 5 4 3 31 31 H 1.09002 * 109.52248 * 297.68621 * 6 5 4 32 32 H 1.09002 * 109.47153 * 299.99641 * 9 7 6 33 33 H 1.09001 * 109.46832 * 179.97438 * 9 7 6 34 34 H 1.09004 * 109.47261 * 59.99813 * 9 7 6 35 35 H 1.00900 * 110.99634 * 278.94600 * 10 7 6 36 36 H 1.08996 * 109.46868 * 300.00084 * 11 10 7 37 37 H 1.09007 * 109.46973 * 59.99616 * 11 10 7 38 38 H 0.97000 * 120.00273 * 180.02562 * 15 14 12 39 39 H 1.08999 * 109.50333 * 62.32076 * 20 6 5 40 40 H 1.08995 * 109.50574 * 182.43411 * 20 6 5 41 41 H 1.09001 * 109.46631 * 294.18250 * 21 3 2 42 42 H 1.09000 * 109.46562 * 54.15988 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4679 1.4312 -0.2380 5 6 3.9653 2.8706 -0.0872 6 6 3.2352 3.7658 -1.0923 7 6 3.6840 5.2165 -0.9052 8 1 3.4506 5.5410 0.1089 9 6 5.1927 5.3178 -1.1388 10 7 2.9806 6.0746 -1.8680 11 6 2.8997 7.4576 -1.3793 12 6 2.1739 8.3062 -2.3913 13 1 1.8089 7.8624 -3.3058 14 6 1.9750 9.6489 -2.1493 15 7 2.4190 10.1892 -1.0355 16 14 1.0747 10.7007 -3.4034 17 1 0.6804 9.8603 -4.5625 18 1 -0.1394 11.2849 -2.7792 19 1 1.9681 11.7931 -3.8657 20 6 1.7260 3.6624 -0.8557 21 6 1.2938 2.1997 -0.9827 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8901 27 1 3.6817 1.0769 -1.2464 28 1 3.9754 0.7938 0.4861 29 1 5.0377 2.9071 -0.2793 30 1 3.7648 3.2214 0.9252 31 1 3.4682 3.4404 -2.1062 32 1 5.7145 4.6811 -0.4244 33 1 5.5122 6.3514 -1.0059 34 1 5.4259 4.9933 -2.1529 35 1 3.4210 6.0368 -2.7750 36 1 2.3589 7.4775 -0.4332 37 1 3.9058 7.8501 -1.2311 38 1 2.2787 11.1337 -0.8650 39 1 1.4887 4.0255 0.1442 40 1 1.1995 4.2641 -1.5964 41 1 1.5177 1.8418 -1.9876 42 1 0.2222 2.1207 -0.7995 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037221657.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:15 Heat of formation + Delta-G solvation = -15.878236 kcal Electronic energy + Delta-G solvation = -17873.439543 eV Core-core repulsion = 15273.362848 eV Total energy + Delta-G solvation = -2600.076696 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.29081 -36.64957 -33.83352 -32.38259 -30.79505 -30.21199 -28.32557 -26.02499 -24.74832 -22.72315 -22.10470 -21.19098 -20.01201 -19.40846 -16.46266 -16.03149 -15.12312 -14.76391 -14.67240 -14.20915 -13.95891 -13.86551 -13.57732 -13.18282 -12.83902 -12.43340 -12.20020 -11.90356 -11.80752 -11.60506 -11.36198 -11.28419 -11.07368 -10.93226 -10.79949 -10.73276 -10.63199 -10.12841 -10.08365 -9.84065 -9.66071 -9.07977 -8.45515 -8.24865 -7.17455 -6.00051 -4.01600 3.32548 3.39812 3.44814 3.94050 4.45449 4.86931 4.93244 5.03841 5.06842 5.14892 5.35391 5.35932 5.38513 5.52223 5.54387 5.64719 5.66809 5.78114 5.80374 5.82446 5.87808 5.97904 6.01679 6.05317 6.15806 6.29388 6.34727 6.38192 6.49258 6.67027 6.79030 6.89629 7.16578 7.21791 7.34100 7.50695 7.83554 8.18495 8.47011 8.69025 9.08659 9.63335 11.11040 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033395 B = 0.004752 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.245634 B = 5890.758823 C = 6468.985073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.051 3.949 3 N -0.539 5.539 4 C 0.060 3.940 5 C -0.113 4.113 6 C -0.072 4.072 7 C 0.087 3.913 8 H 0.070 0.930 9 C -0.180 4.180 10 N -0.682 5.682 11 C 0.195 3.805 12 C -0.512 4.512 13 H 0.062 0.938 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.897 3.103 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.285 1.285 20 C -0.100 4.100 21 C 0.049 3.951 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.028 0.972 26 H 0.071 0.929 27 H 0.028 0.972 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.326 0.674 36 H 0.026 0.974 37 H -0.014 1.014 38 H 0.260 0.740 39 H 0.063 0.937 40 H 0.085 0.915 41 H 0.026 0.974 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.178 -18.492 1.584 18.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.077 4.077 3 N -0.264 5.264 4 C -0.068 4.068 5 C -0.152 4.152 6 C -0.091 4.091 7 C -0.024 4.024 8 H 0.088 0.912 9 C -0.239 4.239 10 N -0.311 5.311 11 C 0.068 3.932 12 C -0.550 4.550 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.725 3.275 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.212 1.212 20 C -0.138 4.138 21 C -0.078 4.078 22 H 0.083 0.917 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.046 0.954 26 H 0.089 0.911 27 H 0.046 0.954 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.143 0.857 36 H 0.044 0.956 37 H 0.003 0.997 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.103 0.897 41 H 0.045 0.955 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.451 -18.278 2.373 18.437 hybrid contribution 0.708 0.643 -1.484 1.765 sum 1.159 -17.635 0.889 17.696 Atomic orbital electron populations 1.21945 0.95152 1.01539 1.02785 1.22054 0.95734 0.89682 1.00229 1.62041 1.03975 1.09866 1.50563 1.22052 0.88013 0.97841 0.98923 1.21707 0.99135 0.93711 1.00608 1.21134 0.95447 0.94524 0.98016 1.21517 0.90423 0.92744 0.97683 0.91212 1.22546 0.98656 1.01754 1.00948 1.60724 1.54165 1.12193 1.04060 1.19557 0.95074 0.82231 0.96329 1.21246 1.35933 0.93115 1.04741 0.92012 1.24984 0.96004 0.98000 0.95607 1.69974 1.46752 1.12480 1.24595 0.86460 0.79413 0.80196 0.81445 1.19695 1.21028 1.21168 1.21495 0.95652 0.93595 1.03055 1.22305 0.98542 0.94568 0.92404 0.91705 0.92153 0.92524 0.95417 0.91091 0.95354 0.91394 0.91686 0.91230 0.92277 0.92947 0.92618 0.93213 0.85707 0.95563 0.99670 0.93039 0.91792 0.89666 0.95525 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.16 37.16 0.34 -1.10 16 2 C 0.05 0.52 5.99 -3.82 -0.02 0.49 16 3 N -0.54 -6.65 4.81 -234.66 -1.13 -7.77 16 4 C 0.06 0.70 5.42 -3.83 -0.02 0.68 16 5 C -0.11 -1.44 4.95 -26.65 -0.13 -1.58 16 6 C -0.07 -1.07 2.02 -90.50 -0.18 -1.25 16 7 C 0.09 1.53 2.17 -67.71 -0.15 1.38 16 8 H 0.07 1.34 7.80 -51.93 -0.40 0.94 16 9 C -0.18 -2.85 8.81 37.16 0.33 -2.52 16 10 N -0.68 -14.39 5.53 -107.99 -0.60 -14.99 16 11 C 0.19 5.11 5.24 -4.97 -0.03 5.08 16 12 C -0.51 -14.55 9.32 -34.44 -0.32 -14.87 16 13 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 16 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 C -0.10 -1.53 5.19 -26.65 -0.14 -1.67 16 21 C 0.05 0.64 4.85 -3.83 -0.02 0.62 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.57 6.21 -51.93 -0.32 0.25 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.03 0.28 8.08 -51.93 -0.42 -0.14 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 29 H 0.06 0.76 6.58 -51.93 -0.34 0.42 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.05 0.71 6.49 -51.93 -0.34 0.38 16 33 H 0.05 0.99 7.45 -51.93 -0.39 0.60 16 34 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 35 H 0.33 6.71 8.46 -39.29 -0.33 6.38 16 36 H 0.03 0.75 8.05 -51.93 -0.42 0.33 16 37 H -0.01 -0.40 7.44 -51.93 -0.39 -0.79 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.08 1.46 7.69 -51.93 -0.40 1.06 16 41 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.08 0.95 5.81 -51.93 -0.30 0.65 16 LS Contribution 320.65 15.07 4.83 4.83 Total: -1.00 -29.34 320.65 -9.44 -38.78 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -7.82 Total: 1.91 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -0.44 Total: -13.24 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: -0.99 Total: -49.10 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.34 -9.44 -38.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037221657.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.905 kcal (2) G-P(sol) polarization free energy of solvation -29.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds