Wall clock time and date at job start Mon Mar 30 2020 03:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46904 * 109.46726 * 2 1 4 4 C 1.46848 * 110.99871 * 189.99599 * 3 2 1 5 5 C 1.53036 * 109.52289 * 185.83550 * 4 3 2 6 6 C 1.53123 * 109.28054 * 300.82250 * 5 4 3 7 7 C 1.52999 * 109.52031 * 177.56101 * 6 5 4 8 8 H 1.08996 * 109.46929 * 300.11960 * 7 6 5 9 9 C 1.52997 * 109.47317 * 60.12856 * 7 6 5 10 10 N 1.46906 * 109.46507 * 180.12819 * 7 6 5 11 11 C 1.46904 * 110.99716 * 154.99875 * 10 7 6 12 12 C 1.50700 * 109.47105 * 179.97438 * 11 10 7 13 13 H 1.08003 * 119.99636 * 0.02562 * 12 11 10 14 14 C 1.37871 * 119.99946 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00285 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99968 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47115 * 359.97438 * 16 14 12 18 18 H 1.48492 * 109.47099 * 119.99864 * 16 14 12 19 19 H 1.48503 * 109.46786 * 239.99747 * 16 14 12 20 20 C 1.53114 * 109.21110 * 57.62071 * 6 5 4 21 21 C 1.46841 * 110.99863 * 314.20532 * 3 2 1 22 22 H 1.09000 * 109.47610 * 299.99960 * 1 2 3 23 23 H 1.08996 * 109.47183 * 60.00763 * 1 2 3 24 24 H 1.09002 * 109.46844 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47354 * 239.99923 * 2 1 3 26 26 H 1.09006 * 109.47264 * 119.99342 * 2 1 3 27 27 H 1.09004 * 109.46015 * 65.82505 * 4 3 2 28 28 H 1.09001 * 109.45782 * 305.85241 * 4 3 2 29 29 H 1.09007 * 109.50297 * 180.88595 * 5 4 3 30 30 H 1.08996 * 109.53507 * 60.78279 * 5 4 3 31 31 H 1.09002 * 109.52248 * 297.68621 * 6 5 4 32 32 H 1.09002 * 109.47153 * 299.99641 * 9 7 6 33 33 H 1.09001 * 109.46832 * 179.97438 * 9 7 6 34 34 H 1.09004 * 109.47261 * 59.99813 * 9 7 6 35 35 H 1.00900 * 110.99634 * 278.94600 * 10 7 6 36 36 H 1.08996 * 109.46868 * 300.00084 * 11 10 7 37 37 H 1.09007 * 109.46973 * 59.99616 * 11 10 7 38 38 H 0.97000 * 120.00273 * 180.02562 * 15 14 12 39 39 H 1.08999 * 109.50333 * 62.32076 * 20 6 5 40 40 H 1.08995 * 109.50574 * 182.43411 * 20 6 5 41 41 H 1.09001 * 109.46631 * 294.18250 * 21 3 2 42 42 H 1.09000 * 109.46562 * 54.15988 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4679 1.4312 -0.2380 5 6 3.9653 2.8706 -0.0872 6 6 3.2352 3.7658 -1.0923 7 6 3.6840 5.2165 -0.9052 8 1 3.4506 5.5410 0.1089 9 6 5.1927 5.3178 -1.1388 10 7 2.9806 6.0746 -1.8680 11 6 2.8997 7.4576 -1.3793 12 6 2.1739 8.3062 -2.3913 13 1 1.8089 7.8624 -3.3058 14 6 1.9750 9.6489 -2.1493 15 7 2.4190 10.1892 -1.0355 16 14 1.0747 10.7007 -3.4034 17 1 0.6804 9.8603 -4.5625 18 1 -0.1394 11.2849 -2.7792 19 1 1.9681 11.7931 -3.8657 20 6 1.7260 3.6624 -0.8557 21 6 1.2938 2.1997 -0.9827 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8901 27 1 3.6817 1.0769 -1.2464 28 1 3.9754 0.7938 0.4861 29 1 5.0377 2.9071 -0.2793 30 1 3.7648 3.2214 0.9252 31 1 3.4682 3.4404 -2.1062 32 1 5.7145 4.6811 -0.4244 33 1 5.5122 6.3514 -1.0059 34 1 5.4259 4.9933 -2.1529 35 1 3.4210 6.0368 -2.7750 36 1 2.3589 7.4775 -0.4332 37 1 3.9058 7.8501 -1.2311 38 1 2.2787 11.1337 -0.8650 39 1 1.4887 4.0255 0.1442 40 1 1.1995 4.2641 -1.5964 41 1 1.5177 1.8418 -1.9876 42 1 0.2222 2.1207 -0.7995 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037221657.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:14 Heat of formation + Delta-G solvation = -35.303660 kcal Electronic energy + Delta-G solvation = -17874.281893 eV Core-core repulsion = 15273.362848 eV Total energy + Delta-G solvation = -2600.919045 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.39881 -38.04348 -35.46824 -34.13259 -31.87794 -31.61371 -29.55521 -27.92210 -25.94244 -23.87795 -23.80289 -22.47160 -21.31505 -20.57515 -18.51832 -17.16715 -16.68566 -16.03919 -15.89333 -15.68968 -15.42230 -15.02318 -14.92350 -14.45322 -14.05843 -13.99639 -13.58204 -13.39134 -13.11014 -13.01044 -12.67122 -12.62585 -12.45105 -12.34409 -12.13956 -12.05819 -11.99233 -11.84040 -11.47412 -11.32460 -10.99761 -10.89412 -10.65292 -9.17625 -8.97669 -8.21392 -6.32414 1.40770 1.41620 1.55463 2.40459 3.03442 3.11859 3.54889 3.80812 3.96685 4.07731 4.25203 4.29406 4.39344 4.41562 4.45500 4.50242 4.62368 4.64011 4.71652 4.77759 4.88937 4.95529 4.97102 4.99457 5.08615 5.12411 5.15925 5.16703 5.20491 5.33267 5.34693 5.47264 5.52038 5.62534 5.65545 6.05772 6.23158 6.27162 6.51426 6.78352 6.94617 7.38848 8.90357 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033395 B = 0.004752 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.245634 B = 5890.758823 C = 6468.985073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.050 3.950 3 N -0.553 5.553 4 C 0.061 3.939 5 C -0.108 4.108 6 C -0.062 4.062 7 C 0.086 3.914 8 H 0.045 0.955 9 C -0.171 4.171 10 N -0.679 5.679 11 C 0.213 3.787 12 C -0.532 4.532 13 H 0.064 0.936 14 C 0.000 4.000 15 N -0.936 5.936 16 Si 0.972 3.028 17 H -0.262 1.262 18 H -0.279 1.279 19 H -0.278 1.278 20 C -0.098 4.098 21 C 0.059 3.941 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.074 0.926 25 H 0.034 0.966 26 H 0.081 0.919 27 H 0.034 0.966 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.029 0.971 34 H 0.064 0.936 35 H 0.332 0.668 36 H -0.007 1.007 37 H -0.040 1.040 38 H 0.264 0.736 39 H 0.043 0.957 40 H 0.061 0.939 41 H 0.030 0.970 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.264 -20.174 0.582 20.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.077 4.077 3 N -0.279 5.279 4 C -0.066 4.066 5 C -0.146 4.146 6 C -0.081 4.081 7 C -0.025 4.025 8 H 0.064 0.936 9 C -0.230 4.230 10 N -0.308 5.308 11 C 0.085 3.915 12 C -0.571 4.571 13 H 0.082 0.918 14 C -0.198 4.198 15 N -0.576 5.576 16 Si 0.797 3.203 17 H -0.186 1.186 18 H -0.205 1.205 19 H -0.203 1.203 20 C -0.136 4.136 21 C -0.069 4.069 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.093 0.907 25 H 0.053 0.947 26 H 0.099 0.901 27 H 0.052 0.948 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.048 0.952 34 H 0.083 0.917 35 H 0.149 0.851 36 H 0.011 0.989 37 H -0.022 1.022 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.079 0.921 41 H 0.048 0.952 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.546 -19.993 1.369 20.047 hybrid contribution 0.694 1.125 -1.112 1.727 sum 1.240 -18.868 0.257 18.911 Atomic orbital electron populations 1.21926 0.94624 1.02558 1.02098 1.22129 0.96217 0.88335 1.01020 1.62028 1.04404 1.11199 1.50269 1.22067 0.87713 0.97001 0.99860 1.21662 0.99827 0.94039 0.99062 1.21038 0.95260 0.92692 0.99139 1.21606 0.91690 0.93741 0.95436 0.93622 1.22438 0.97083 1.00817 1.02681 1.60609 1.55562 1.09682 1.04943 1.19152 0.92852 0.84831 0.94665 1.21598 1.36355 0.93946 1.05174 0.91780 1.25953 0.96676 0.99443 0.97693 1.70105 1.47838 1.13067 1.26595 0.85289 0.78024 0.78193 0.78806 1.18605 1.20469 1.20324 1.21399 0.95987 0.95188 1.00985 1.22145 0.98969 0.92902 0.92895 0.92545 0.92659 0.90693 0.94730 0.90053 0.94758 0.89564 0.89996 0.92295 0.91659 0.90170 0.95184 0.91726 0.85081 0.98919 1.02237 0.92702 0.93800 0.92060 0.95178 0.90008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.16 71.98 0.66 -1.87 16 2 C 0.05 0.90 5.99 86.30 0.52 1.41 16 3 N -0.55 -12.59 4.81 -896.34 -4.31 -16.90 16 4 C 0.06 1.27 5.42 86.33 0.47 1.74 16 5 C -0.11 -2.54 4.95 30.65 0.15 -2.39 16 6 C -0.06 -1.80 2.02 -10.71 -0.02 -1.82 16 7 C 0.09 3.05 2.17 44.91 0.10 3.15 16 8 H 0.05 1.84 7.80 -2.39 -0.02 1.82 16 9 C -0.17 -5.31 8.81 71.98 0.63 -4.68 16 10 N -0.68 -29.44 5.53 -495.56 -2.74 -32.18 16 11 C 0.21 11.67 5.24 85.56 0.45 12.12 16 12 C -0.53 -30.91 9.32 25.60 0.24 -30.67 16 13 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 14 C 0.00 0.01 5.46 84.65 0.46 0.48 16 15 N -0.94 -57.61 13.29 21.44 0.28 -57.33 16 16 Si 0.97 44.95 29.54 68.60 2.03 46.97 16 17 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 19 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 20 C -0.10 -3.02 5.19 30.65 0.16 -2.86 16 21 C 0.06 1.46 4.85 86.33 0.42 1.88 16 22 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.05 0.95 6.21 -2.39 -0.01 0.94 16 24 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.03 0.58 8.08 -2.39 -0.02 0.56 16 26 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 27 H 0.03 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.09 1.51 8.12 -2.39 -0.02 1.49 16 29 H 0.08 1.67 6.58 -2.38 -0.02 1.65 16 30 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.08 2.03 6.49 -2.39 -0.02 2.02 16 33 H 0.03 1.07 7.45 -2.39 -0.02 1.05 16 34 H 0.06 1.81 8.13 -2.38 -0.02 1.79 16 35 H 0.33 13.77 8.46 -89.69 -0.76 13.01 16 36 H -0.01 -0.44 8.05 -2.39 -0.02 -0.46 16 37 H -0.04 -2.36 7.44 -2.38 -0.02 -2.37 16 38 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 39 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.06 2.17 7.69 -2.39 -0.02 2.15 16 41 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.08 1.96 5.81 -2.39 -0.01 1.94 16 Total: -1.00 -64.12 320.65 -0.30 -64.42 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.20 Total: 18.52 kcal Atomic # 6 Polarization: -27.75 SS G_CDS: 4.23 Total: -23.52 kcal Atomic # 7 Polarization: -99.64 SS G_CDS: -6.77 Total: -106.40 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -64.12 -0.30 -64.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037221657.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.121 kcal (2) G-P(sol) polarization free energy of solvation -64.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds