Wall clock time and date at job start Mon Mar 30 2020 03:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46901 * 109.47158 * 2 1 4 4 C 1.46847 * 111.00144 * 170.00079 * 3 2 1 5 5 C 1.53044 * 109.51335 * 185.83239 * 4 3 2 6 6 C 1.53117 * 109.27792 * 300.82256 * 5 4 3 7 7 C 1.53000 * 109.52114 * 177.56078 * 6 5 4 8 8 H 1.09001 * 109.46791 * 60.00306 * 7 6 5 9 9 C 1.52997 * 109.47110 * 299.99943 * 7 6 5 10 10 N 1.46898 * 109.46952 * 180.02562 * 7 6 5 11 11 C 1.46898 * 111.00185 * 204.99971 * 10 7 6 12 12 C 1.50696 * 109.47671 * 179.97438 * 11 10 7 13 13 H 1.08010 * 119.99682 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00232 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00050 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99974 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47023 * 359.97438 * 16 14 12 18 18 H 1.48490 * 109.47015 * 120.00095 * 16 14 12 19 19 H 1.48503 * 109.46976 * 240.00330 * 16 14 12 20 20 C 1.53127 * 109.15989 * 57.65607 * 6 5 4 21 21 C 1.46830 * 110.98168 * 294.21498 * 3 2 1 22 22 H 1.09000 * 109.47363 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46999 * 300.00307 * 1 2 3 24 24 H 1.08998 * 109.46977 * 59.99901 * 1 2 3 25 25 H 1.09001 * 109.47466 * 239.99936 * 2 1 3 26 26 H 1.09002 * 109.47083 * 119.99350 * 2 1 3 27 27 H 1.09002 * 109.46448 * 65.81961 * 4 3 2 28 28 H 1.08994 * 109.45958 * 305.84326 * 4 3 2 29 29 H 1.09001 * 109.49858 * 60.76701 * 5 4 3 30 30 H 1.09000 * 109.49965 * 180.88251 * 5 4 3 31 31 H 1.09004 * 109.52347 * 297.75632 * 6 5 4 32 32 H 1.09006 * 109.47098 * 60.00293 * 9 7 6 33 33 H 1.08997 * 109.46961 * 179.97438 * 9 7 6 34 34 H 1.08993 * 109.47170 * 300.00373 * 9 7 6 35 35 H 1.00899 * 111.00320 * 81.04472 * 10 7 6 36 36 H 1.09002 * 109.46824 * 300.00139 * 11 10 7 37 37 H 1.09009 * 109.46945 * 59.99542 * 11 10 7 38 38 H 0.96998 * 119.99609 * 179.97438 * 15 14 12 39 39 H 1.08997 * 109.50037 * 62.28538 * 20 6 5 40 40 H 1.08996 * 109.50157 * 182.36309 * 20 6 5 41 41 H 1.08995 * 109.46742 * 54.13906 * 21 3 2 42 42 H 1.09004 * 109.45381 * 294.16241 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4680 1.4311 0.2380 5 6 3.9172 2.8876 0.3760 6 6 3.5672 3.6482 -0.9060 7 6 3.9588 5.1191 -0.7510 8 1 5.0307 5.1922 -0.5669 9 6 3.1962 5.7284 0.4271 10 7 3.6220 5.8477 -1.9812 11 6 4.4653 7.0408 -2.1341 12 6 4.0920 7.7604 -3.4045 13 1 3.3071 7.3702 -4.0355 14 6 4.7533 8.9163 -3.7618 15 7 5.7101 9.3906 -2.9942 16 14 4.2901 9.8087 -5.3362 17 1 3.1920 9.0757 -6.0160 18 1 3.8394 11.1856 -5.0104 19 1 5.4711 9.8738 -6.2340 20 6 2.0602 3.5436 -1.1569 21 6 1.6648 2.0681 -1.2503 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8901 27 1 3.9888 0.9682 -0.6002 28 1 3.7027 0.8903 1.1548 29 1 3.4071 3.3471 1.2226 30 1 4.9947 2.9224 0.5370 31 1 4.1074 3.2130 -1.7468 32 1 3.4458 5.1878 1.3402 33 1 3.4756 6.7762 0.5378 34 1 2.1244 5.6553 0.2430 35 1 2.6432 6.0920 -2.0004 36 1 4.3141 7.7041 -1.2825 37 1 5.5126 6.7419 -2.1805 38 1 6.1755 10.2036 -3.2459 39 1 1.5210 4.0134 -0.3344 40 1 1.8109 4.0476 -2.0906 41 1 0.5901 1.9898 -1.4146 42 1 2.1942 1.6022 -2.0815 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037221658.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:16 Heat of formation + Delta-G solvation = -16.437772 kcal Electronic energy + Delta-G solvation = -17876.284503 eV Core-core repulsion = 15276.183544 eV Total energy + Delta-G solvation = -2600.100959 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.39103 -36.67183 -33.82659 -32.35531 -30.75399 -30.26157 -28.28375 -26.02738 -24.62103 -23.22992 -22.13008 -21.25269 -20.51129 -18.63477 -16.48319 -15.95770 -15.30254 -14.86496 -14.58530 -14.35806 -13.96576 -13.84321 -13.43579 -13.38553 -13.08311 -12.45281 -12.10435 -11.96167 -11.76418 -11.68177 -11.51792 -11.24813 -11.14803 -10.97220 -10.77989 -10.72930 -10.55875 -10.20940 -10.09069 -9.84453 -9.62374 -9.07463 -8.45980 -8.31949 -7.18242 -6.00442 -4.01943 3.32384 3.39547 3.44715 3.88033 4.45233 4.81196 4.93219 4.96152 5.09164 5.16024 5.33809 5.35525 5.38179 5.48232 5.51006 5.59764 5.64674 5.67087 5.79797 5.83222 5.88470 5.93060 5.99343 6.04246 6.10221 6.24307 6.27042 6.40532 6.51514 6.57660 6.69804 6.85257 7.11911 7.13926 7.34139 7.50298 7.83408 8.18287 8.47217 8.69174 9.08317 9.62959 11.10686 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.043288 B = 0.004416 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.677875 B = 6338.883656 C = 6695.784837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 N -0.539 5.539 4 C 0.059 3.941 5 C -0.115 4.115 6 C -0.073 4.073 7 C 0.088 3.912 8 H 0.068 0.932 9 C -0.181 4.181 10 N -0.684 5.684 11 C 0.194 3.806 12 C -0.512 4.512 13 H 0.062 0.938 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.897 3.103 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.284 1.284 20 C -0.110 4.110 21 C 0.054 3.946 22 H 0.055 0.945 23 H 0.062 0.938 24 H 0.055 0.945 25 H 0.029 0.971 26 H 0.070 0.930 27 H 0.030 0.970 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.328 0.672 36 H -0.014 1.014 37 H 0.025 0.975 38 H 0.260 0.740 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.446 -16.526 7.447 19.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 N -0.264 5.264 4 C -0.069 4.069 5 C -0.153 4.153 6 C -0.093 4.093 7 C -0.023 4.023 8 H 0.086 0.914 9 C -0.240 4.240 10 N -0.314 5.314 11 C 0.067 3.933 12 C -0.550 4.550 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.725 3.275 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.148 4.148 21 C -0.073 4.073 22 H 0.074 0.926 23 H 0.081 0.919 24 H 0.074 0.926 25 H 0.047 0.953 26 H 0.088 0.912 27 H 0.048 0.952 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.145 0.855 36 H 0.004 0.996 37 H 0.043 0.957 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -7.133 -16.516 7.421 19.461 hybrid contribution -0.040 0.750 -0.796 1.095 sum -7.174 -15.765 6.624 18.544 Atomic orbital electron populations 1.21805 0.95039 1.01217 1.02595 1.22043 0.96049 0.89369 1.00343 1.61985 1.13973 1.14792 1.35658 1.22063 0.87216 0.97709 0.99943 1.21725 1.00388 0.94079 0.99103 1.21160 0.95927 0.95413 0.96760 1.21457 0.98906 0.92628 0.89284 0.91416 1.22584 1.00781 1.01151 0.99452 1.60738 1.08696 1.28076 1.33842 1.19566 0.92832 0.85234 0.95658 1.21251 1.19295 1.07604 1.06899 0.92000 1.24991 0.95134 0.97302 0.97215 1.69975 1.23713 1.22320 1.37813 0.86452 0.78366 0.79373 0.83278 1.19674 1.21129 1.21047 1.21644 0.96229 0.94351 1.02547 1.22168 1.00318 0.95428 0.89419 0.92612 0.91898 0.92553 0.95282 0.91156 0.95198 0.91326 0.90914 0.91803 0.91313 0.92893 0.92844 0.92660 0.85532 0.99576 0.95657 0.93038 0.91397 0.90602 0.90962 0.95192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.84 37.16 0.37 -0.91 16 2 C 0.05 0.48 5.68 -3.82 -0.02 0.46 16 3 N -0.54 -6.28 4.66 -234.68 -1.09 -7.37 16 4 C 0.06 0.67 5.46 -3.83 -0.02 0.65 16 5 C -0.11 -1.45 5.09 -26.65 -0.14 -1.58 16 6 C -0.07 -1.09 2.28 -90.49 -0.21 -1.29 16 7 C 0.09 1.55 2.43 -67.71 -0.16 1.39 16 8 H 0.07 1.29 7.80 -51.93 -0.41 0.88 16 9 C -0.18 -2.90 8.46 37.16 0.31 -2.58 16 10 N -0.68 -14.58 5.78 -107.99 -0.62 -15.21 16 11 C 0.19 5.12 5.24 -4.98 -0.03 5.09 16 12 C -0.51 -14.65 9.32 -34.44 -0.32 -14.97 16 13 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 14 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 16 Si 0.90 21.90 29.54 -169.99 -5.02 16.87 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 C -0.11 -1.52 4.76 -26.65 -0.13 -1.64 16 21 C 0.05 0.66 5.29 -3.84 -0.02 0.64 16 22 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 25 H 0.03 0.28 8.12 -51.93 -0.42 -0.14 16 26 H 0.07 0.62 7.99 -51.93 -0.41 0.21 16 27 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.70 8.01 -51.93 -0.42 0.28 16 29 H 0.07 0.93 6.31 -51.93 -0.33 0.61 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.05 0.74 6.38 -51.93 -0.33 0.41 16 33 H 0.05 0.96 7.45 -51.93 -0.39 0.57 16 34 H 0.05 0.84 6.36 -51.93 -0.33 0.51 16 35 H 0.33 6.75 7.79 -39.29 -0.31 6.45 16 36 H -0.01 -0.38 7.44 -51.93 -0.39 -0.77 16 37 H 0.03 0.73 8.06 -51.92 -0.42 0.31 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.07 0.95 6.31 -51.93 -0.33 0.62 16 40 H 0.08 1.13 7.35 -51.93 -0.38 0.75 16 41 H 0.07 0.82 6.21 -51.93 -0.32 0.50 16 42 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 316.86 15.07 4.78 4.78 Total: -1.00 -29.59 316.86 -9.28 -38.87 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -7.59 Total: 1.73 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -0.46 Total: -13.26 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: -0.98 Total: -48.98 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.59 -9.28 -38.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037221658.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.427 kcal (2) G-P(sol) polarization free energy of solvation -29.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds