Wall clock time and date at job start Mon Mar 30 2020 03:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46900 * 109.46863 * 2 1 4 4 C 1.46850 * 110.99893 * 65.79371 * 3 2 1 5 5 C 1.53042 * 109.52491 * 185.83593 * 4 3 2 6 6 C 1.53121 * 109.27807 * 300.82285 * 5 4 3 7 7 C 1.53121 * 109.16036 * 57.64995 * 6 5 4 8 8 H 1.08999 * 109.53487 * 62.30854 * 7 6 5 9 9 C 1.53002 * 109.50166 * 182.40488 * 7 6 5 10 10 H 1.09003 * 109.47094 * 59.80258 * 9 7 6 11 11 C 1.52994 * 109.47222 * 179.80569 * 9 7 6 12 12 N 1.46906 * 109.47092 * 299.80601 * 9 7 6 13 13 C 1.46901 * 110.99793 * 155.00227 * 12 9 7 14 14 C 1.50701 * 109.46921 * 179.97438 * 13 12 9 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47294 * 60.00559 * 18 16 14 20 20 H 1.48503 * 109.46954 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47431 * 300.00157 * 18 16 14 22 22 C 1.46852 * 110.99999 * 190.00188 * 3 2 1 23 23 H 1.08996 * 109.47174 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46480 * 299.99652 * 1 2 3 25 25 H 1.08993 * 109.47466 * 59.99568 * 1 2 3 26 26 H 1.08995 * 109.46794 * 240.00733 * 2 1 3 27 27 H 1.08993 * 109.47148 * 119.99990 * 2 1 3 28 28 H 1.08991 * 109.46710 * 305.85471 * 4 3 2 29 29 H 1.09001 * 109.46032 * 65.83164 * 4 3 2 30 30 H 1.08999 * 109.50202 * 60.75737 * 5 4 3 31 31 H 1.08994 * 109.50411 * 180.88502 * 5 4 3 32 32 H 1.09003 * 109.52239 * 297.75025 * 6 5 4 33 33 H 1.08994 * 109.52210 * 177.55779 * 6 5 4 34 34 H 1.08995 * 109.47731 * 179.97438 * 11 9 7 35 35 H 1.08996 * 109.47268 * 300.00419 * 11 9 7 36 36 H 1.09003 * 109.47340 * 59.99839 * 11 9 7 37 37 H 1.00898 * 110.99995 * 278.95304 * 12 9 7 38 38 H 1.09002 * 109.47401 * 59.99808 * 13 12 9 39 39 H 1.09001 * 109.46874 * 299.99821 * 13 12 9 40 40 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.46056 * 54.14840 * 22 3 2 42 42 H 1.08999 * 109.46223 * 294.17972 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6650 2.0685 1.2504 5 6 2.0607 3.5439 1.1568 6 6 3.5676 3.6483 0.9058 7 6 3.9174 2.8875 -0.3761 8 1 3.4078 3.3469 -1.2231 9 6 5.4298 2.9361 -0.6024 10 1 5.9389 2.4779 0.2456 11 6 5.7791 2.1716 -1.8808 12 7 5.8605 4.3344 -0.7348 13 6 7.2739 4.4871 -0.3649 14 6 7.6788 5.9311 -0.5135 15 1 6.9581 6.6622 -0.8488 16 6 8.9691 6.3189 -0.2205 17 7 9.8465 5.4287 0.1882 18 14 9.4707 8.1089 -0.4041 19 1 8.6320 8.9518 0.4856 20 1 10.8996 8.2633 -0.0303 21 1 9.2796 8.5345 -1.8139 22 6 3.4680 1.4312 -0.2381 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3632 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 0.5905 1.9904 1.4149 29 1 2.1945 1.6027 2.0816 30 1 1.5214 4.0138 0.3343 31 1 1.8117 4.0474 2.0909 32 1 4.1079 3.2131 1.7465 33 1 3.8467 4.6961 0.7953 34 1 6.8565 2.2066 -2.0422 35 1 5.4595 1.1342 -1.7826 36 1 5.2700 2.6298 -2.7287 37 1 5.6919 4.6777 -1.6684 38 1 7.8894 3.8685 -1.0181 39 1 7.4145 4.1746 0.6699 40 1 10.7543 5.7015 0.3940 41 1 3.7027 0.8902 -1.1548 42 1 3.9888 0.9683 0.6001 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037221664.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:48 Heat of formation + Delta-G solvation = -18.630755 kcal Electronic energy + Delta-G solvation = -17894.292141 eV Core-core repulsion = 15294.096087 eV Total energy + Delta-G solvation = -2600.196054 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.29170 -36.46180 -33.84163 -32.69034 -31.04942 -29.82613 -28.32099 -26.02040 -24.27748 -23.45479 -21.79385 -21.36302 -19.91720 -19.42161 -16.44464 -15.96149 -15.25859 -14.93924 -14.50890 -14.26766 -13.81345 -13.57299 -13.49810 -13.21784 -13.13745 -12.50142 -12.21102 -12.07677 -11.79958 -11.70240 -11.34440 -11.25323 -11.09311 -11.03588 -10.72150 -10.64714 -10.57640 -10.12235 -10.07465 -9.90949 -9.67560 -9.12098 -8.45341 -8.28060 -7.18583 -6.00533 -4.02165 3.35189 3.38865 3.42126 3.88895 4.45285 4.82611 4.94739 5.05013 5.16966 5.20298 5.30991 5.35322 5.35593 5.50438 5.53031 5.64346 5.71010 5.75508 5.78119 5.83204 5.85417 5.93084 5.97644 6.11790 6.13954 6.24848 6.33846 6.37132 6.51440 6.61928 6.84415 6.87820 7.15825 7.16937 7.32800 7.49409 7.82547 8.17617 8.46207 8.68022 9.07595 9.62626 11.10502 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.047019 B = 0.004496 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.366789 B = 6225.619593 C = 6563.583947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.050 3.950 3 N -0.538 5.538 4 C 0.054 3.946 5 C -0.118 4.118 6 C -0.106 4.106 7 C -0.067 4.067 8 H 0.073 0.927 9 C 0.087 3.913 10 H 0.067 0.933 11 C -0.180 4.180 12 N -0.681 5.681 13 C 0.196 3.804 14 C -0.513 4.513 15 H 0.061 0.939 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.898 3.102 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.060 3.940 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.029 0.971 28 H 0.070 0.930 29 H 0.028 0.972 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.328 0.672 38 H -0.014 1.014 39 H 0.025 0.975 40 H 0.261 0.739 41 H 0.073 0.927 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.910 -9.819 -0.046 18.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.078 4.078 3 N -0.263 5.263 4 C -0.074 4.074 5 C -0.155 4.155 6 C -0.143 4.143 7 C -0.086 4.086 8 H 0.091 0.909 9 C -0.024 4.024 10 H 0.085 0.915 11 C -0.239 4.239 12 N -0.310 5.310 13 C 0.069 3.931 14 C -0.552 4.552 15 H 0.079 0.921 16 C -0.146 4.146 17 N -0.539 5.539 18 Si 0.726 3.274 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.068 4.068 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.047 0.953 28 H 0.089 0.911 29 H 0.047 0.953 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.145 0.855 38 H 0.004 0.996 39 H 0.043 0.957 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -16.166 -9.403 0.269 18.704 hybrid contribution 1.334 -0.017 -0.147 1.342 sum -14.833 -9.421 0.123 17.572 Atomic orbital electron populations 1.21802 0.95114 1.01198 1.02457 1.22044 0.95914 0.89378 1.00484 1.61954 1.14473 1.14785 1.35102 1.22148 1.00095 0.95307 0.89842 1.21629 0.97696 0.94750 1.01472 1.21479 0.93678 1.02509 0.96663 1.21104 0.95367 0.93370 0.98792 0.90892 1.21488 0.93921 0.90618 0.96394 0.91483 1.22550 1.01844 1.00225 0.99298 1.60691 1.24059 1.15241 1.31035 1.19545 0.81484 0.96426 0.95643 1.21173 0.95549 0.93835 1.44623 0.92055 1.24986 0.96532 0.97689 0.95381 1.69954 1.04343 1.33657 1.45908 0.86560 0.77273 0.85015 0.78527 1.20170 1.21407 1.20296 1.22222 0.86398 0.98022 1.00193 0.92608 0.92722 0.91874 0.91009 0.95307 0.91124 0.95350 0.91445 0.92020 0.93088 0.89783 0.92560 0.93131 0.92894 0.85504 0.99641 0.95672 0.92926 0.90878 0.95248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.84 37.16 0.37 -0.91 16 2 C 0.05 0.51 5.68 -3.82 -0.02 0.49 16 3 N -0.54 -6.62 4.66 -234.67 -1.09 -7.71 16 4 C 0.05 0.64 5.29 -3.83 -0.02 0.62 16 5 C -0.12 -1.49 6.09 -26.65 -0.16 -1.66 16 6 C -0.11 -1.61 5.09 -26.61 -0.14 -1.75 16 7 C -0.07 -1.01 2.12 -90.54 -0.19 -1.20 16 8 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 9 C 0.09 1.53 2.17 -67.71 -0.15 1.38 16 10 H 0.07 1.28 7.80 -51.93 -0.40 0.87 16 11 C -0.18 -2.85 8.81 37.15 0.33 -2.52 16 12 N -0.68 -14.36 5.53 -107.99 -0.60 -14.96 16 13 C 0.20 5.12 5.24 -4.97 -0.03 5.09 16 14 C -0.51 -14.59 9.32 -34.44 -0.32 -14.91 16 15 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16 18 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C 0.06 0.79 4.36 -3.83 -0.02 0.78 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.47 6.43 -51.93 -0.33 0.13 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.70 7.99 -51.93 -0.41 0.29 16 27 H 0.03 0.29 8.12 -51.93 -0.42 -0.13 16 28 H 0.07 0.74 6.21 -51.93 -0.32 0.42 16 29 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.08 1.46 7.70 -51.93 -0.40 1.06 16 34 H 0.06 0.99 7.45 -51.93 -0.39 0.60 16 35 H 0.05 0.69 6.45 -51.93 -0.33 0.35 16 36 H 0.05 0.79 8.13 -51.93 -0.42 0.37 16 37 H 0.33 6.75 8.46 -39.29 -0.33 6.41 16 38 H -0.01 -0.39 7.44 -51.93 -0.39 -0.78 16 39 H 0.03 0.72 8.06 -51.93 -0.42 0.30 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.07 0.93 6.35 -51.93 -0.33 0.60 16 42 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 321.66 15.07 4.85 4.85 Total: -1.00 -29.19 321.66 -9.41 -38.60 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -7.84 Total: 1.81 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -0.45 Total: -13.10 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: -0.95 Total: -48.99 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.19 -9.41 -38.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037221664.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.972 kcal (2) G-P(sol) polarization free energy of solvation -29.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds