Wall clock time and date at job start Mon Mar 30 2020 03:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46900 * 109.46863 * 2 1 4 4 C 1.46850 * 110.99893 * 65.79371 * 3 2 1 5 5 C 1.53042 * 109.52491 * 185.83593 * 4 3 2 6 6 C 1.53121 * 109.27807 * 300.82285 * 5 4 3 7 7 C 1.53121 * 109.16036 * 57.64995 * 6 5 4 8 8 H 1.08999 * 109.53487 * 62.30854 * 7 6 5 9 9 C 1.53002 * 109.50166 * 182.40488 * 7 6 5 10 10 H 1.09003 * 109.47094 * 59.80258 * 9 7 6 11 11 C 1.52994 * 109.47222 * 179.80569 * 9 7 6 12 12 N 1.46906 * 109.47092 * 299.80601 * 9 7 6 13 13 C 1.46901 * 110.99793 * 155.00227 * 12 9 7 14 14 C 1.50701 * 109.46921 * 179.97438 * 13 12 9 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47294 * 60.00559 * 18 16 14 20 20 H 1.48503 * 109.46954 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47431 * 300.00157 * 18 16 14 22 22 C 1.46852 * 110.99999 * 190.00188 * 3 2 1 23 23 H 1.08996 * 109.47174 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46480 * 299.99652 * 1 2 3 25 25 H 1.08993 * 109.47466 * 59.99568 * 1 2 3 26 26 H 1.08995 * 109.46794 * 240.00733 * 2 1 3 27 27 H 1.08993 * 109.47148 * 119.99990 * 2 1 3 28 28 H 1.08991 * 109.46710 * 305.85471 * 4 3 2 29 29 H 1.09001 * 109.46032 * 65.83164 * 4 3 2 30 30 H 1.08999 * 109.50202 * 60.75737 * 5 4 3 31 31 H 1.08994 * 109.50411 * 180.88502 * 5 4 3 32 32 H 1.09003 * 109.52239 * 297.75025 * 6 5 4 33 33 H 1.08994 * 109.52210 * 177.55779 * 6 5 4 34 34 H 1.08995 * 109.47731 * 179.97438 * 11 9 7 35 35 H 1.08996 * 109.47268 * 300.00419 * 11 9 7 36 36 H 1.09003 * 109.47340 * 59.99839 * 11 9 7 37 37 H 1.00898 * 110.99995 * 278.95304 * 12 9 7 38 38 H 1.09002 * 109.47401 * 59.99808 * 13 12 9 39 39 H 1.09001 * 109.46874 * 299.99821 * 13 12 9 40 40 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.46056 * 54.14840 * 22 3 2 42 42 H 1.08999 * 109.46223 * 294.17972 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6650 2.0685 1.2504 5 6 2.0607 3.5439 1.1568 6 6 3.5676 3.6483 0.9058 7 6 3.9174 2.8875 -0.3761 8 1 3.4078 3.3469 -1.2231 9 6 5.4298 2.9361 -0.6024 10 1 5.9389 2.4779 0.2456 11 6 5.7791 2.1716 -1.8808 12 7 5.8605 4.3344 -0.7348 13 6 7.2739 4.4871 -0.3649 14 6 7.6788 5.9311 -0.5135 15 1 6.9581 6.6622 -0.8488 16 6 8.9691 6.3189 -0.2205 17 7 9.8465 5.4287 0.1882 18 14 9.4707 8.1089 -0.4041 19 1 8.6320 8.9518 0.4856 20 1 10.8996 8.2633 -0.0303 21 1 9.2796 8.5345 -1.8139 22 6 3.4680 1.4312 -0.2381 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3632 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 0.5905 1.9904 1.4149 29 1 2.1945 1.6027 2.0816 30 1 1.5214 4.0138 0.3343 31 1 1.8117 4.0474 2.0909 32 1 4.1079 3.2131 1.7465 33 1 3.8467 4.6961 0.7953 34 1 6.8565 2.2066 -2.0422 35 1 5.4595 1.1342 -1.7826 36 1 5.2700 2.6298 -2.7287 37 1 5.6919 4.6777 -1.6684 38 1 7.8894 3.8685 -1.0181 39 1 7.4145 4.1746 0.6699 40 1 10.7543 5.7015 0.3940 41 1 3.7027 0.8902 -1.1548 42 1 3.9888 0.9683 0.6001 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037221664.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:48 Heat of formation + Delta-G solvation = -37.754798 kcal Electronic energy + Delta-G solvation = -17895.121422 eV Core-core repulsion = 15294.096087 eV Total energy + Delta-G solvation = -2601.025334 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.42138 -37.89676 -35.35759 -34.37222 -32.54948 -30.84213 -29.65786 -27.96173 -25.28737 -24.85389 -23.46331 -22.57985 -21.20237 -20.63023 -18.50039 -17.08315 -16.76079 -16.25428 -15.84545 -15.78178 -15.11297 -14.88794 -14.82481 -14.54559 -14.19548 -14.04480 -13.58670 -13.51117 -13.28584 -12.81407 -12.76153 -12.59967 -12.54249 -12.37674 -12.27500 -11.96310 -11.92550 -11.72651 -11.45846 -11.35403 -11.09397 -10.90318 -10.64430 -9.24281 -8.99160 -8.21546 -6.32588 1.40942 1.44620 1.52513 2.40358 2.92462 3.11588 3.59102 3.81885 3.96631 4.07254 4.23117 4.25394 4.35398 4.41541 4.46292 4.52089 4.60319 4.64943 4.67092 4.78252 4.82807 4.90340 4.96222 5.00986 5.07503 5.12286 5.15029 5.18077 5.26094 5.30724 5.39108 5.41227 5.55417 5.61126 5.64958 6.04712 6.17832 6.23720 6.50797 6.77363 6.93760 7.38470 8.89757 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.047019 B = 0.004496 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.366789 B = 6225.619593 C = 6563.583947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.047 3.953 3 N -0.544 5.544 4 C 0.055 3.945 5 C -0.111 4.111 6 C -0.105 4.105 7 C -0.056 4.056 8 H 0.073 0.927 9 C 0.086 3.914 10 H 0.046 0.954 11 C -0.172 4.172 12 N -0.677 5.677 13 C 0.214 3.786 14 C -0.535 4.535 15 H 0.064 0.936 16 C 0.000 4.000 17 N -0.935 5.935 18 Si 0.972 3.028 19 H -0.268 1.268 20 H -0.283 1.283 21 H -0.266 1.266 22 C 0.067 3.933 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.077 0.923 27 H 0.029 0.971 28 H 0.090 0.910 29 H 0.024 0.976 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.036 0.964 33 H 0.058 0.942 34 H 0.031 0.969 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.334 0.666 38 H -0.039 1.039 39 H -0.007 1.007 40 H 0.264 0.736 41 H 0.083 0.917 42 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.623 -9.790 -0.601 20.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.081 4.081 3 N -0.269 5.269 4 C -0.072 4.072 5 C -0.149 4.149 6 C -0.143 4.143 7 C -0.075 4.075 8 H 0.091 0.909 9 C -0.025 4.025 10 H 0.064 0.936 11 C -0.230 4.230 12 N -0.307 5.307 13 C 0.086 3.914 14 C -0.573 4.573 15 H 0.083 0.917 16 C -0.198 4.198 17 N -0.576 5.576 18 Si 0.797 3.203 19 H -0.193 1.193 20 H -0.209 1.209 21 H -0.190 1.190 22 C -0.062 4.062 23 H 0.090 0.910 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.096 0.904 27 H 0.048 0.952 28 H 0.108 0.892 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.051 0.949 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.151 0.849 38 H -0.021 1.021 39 H 0.011 0.989 40 H 0.073 0.927 41 H 0.102 0.898 42 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -17.910 -9.389 -0.294 20.224 hybrid contribution 1.839 -0.088 0.046 1.842 sum -16.071 -9.477 -0.247 18.659 Atomic orbital electron populations 1.21767 0.93707 1.02282 1.02300 1.22145 0.97035 0.88047 1.00824 1.61973 1.13338 1.16296 1.35331 1.22160 1.01206 0.94301 0.89574 1.21571 0.95270 0.95892 1.02124 1.21425 0.95786 1.00722 0.96334 1.20960 0.92991 0.95012 0.98556 0.90873 1.21559 0.95606 0.88616 0.96673 0.93604 1.22439 1.00395 1.01719 0.98473 1.60573 1.20707 1.18056 1.31363 1.19145 0.83906 0.95221 0.93153 1.21547 0.96094 0.94784 1.44872 0.91745 1.25957 0.96454 1.02670 0.94682 1.70091 1.04786 1.36078 1.46619 0.85394 0.76965 0.78918 0.79061 1.19346 1.20865 1.19043 1.22093 0.87398 0.96218 1.00470 0.90978 0.92570 0.92267 0.90426 0.95227 0.89163 0.95773 0.91328 0.90844 0.94475 0.92337 0.94943 0.90445 0.91590 0.84917 1.02146 0.98924 0.92689 0.89826 0.95974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.84 71.98 0.71 -1.35 16 2 C 0.05 0.84 5.68 86.30 0.49 1.33 16 3 N -0.54 -12.21 4.66 -896.37 -4.17 -16.38 16 4 C 0.06 1.19 5.29 86.33 0.46 1.65 16 5 C -0.11 -2.67 6.09 30.65 0.19 -2.48 16 6 C -0.10 -3.22 5.09 30.68 0.16 -3.07 16 7 C -0.06 -1.65 2.12 -10.74 -0.02 -1.68 16 8 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 9 C 0.09 3.08 2.17 44.91 0.10 3.18 16 10 H 0.05 1.83 7.80 -2.39 -0.02 1.81 16 11 C -0.17 -5.35 8.81 71.98 0.63 -4.71 16 12 N -0.68 -29.39 5.53 -495.56 -2.74 -32.13 16 13 C 0.21 11.67 5.24 85.56 0.45 12.12 16 14 C -0.53 -30.99 9.32 25.60 0.24 -30.75 16 15 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 16 C 0.00 0.02 5.46 84.66 0.46 0.48 16 17 N -0.94 -57.48 13.29 21.45 0.28 -57.19 16 18 Si 0.97 44.87 29.54 68.60 2.03 46.89 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 21 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 22 C 0.07 1.67 4.36 86.32 0.38 2.05 16 23 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.06 0.79 6.43 -2.38 -0.02 0.78 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.08 1.31 7.99 -2.39 -0.02 1.29 16 27 H 0.03 0.54 8.12 -2.39 -0.02 0.52 16 28 H 0.09 1.63 6.21 -2.39 -0.01 1.62 16 29 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 2.08 7.70 -2.39 -0.02 2.06 16 34 H 0.03 1.15 7.45 -2.39 -0.02 1.13 16 35 H 0.08 1.99 6.45 -2.39 -0.02 1.97 16 36 H 0.07 1.88 8.13 -2.39 -0.02 1.86 16 37 H 0.33 13.87 8.46 -89.70 -0.76 13.11 16 38 H -0.04 -2.29 7.44 -2.39 -0.02 -2.31 16 39 H -0.01 -0.44 8.06 -2.39 -0.02 -0.46 16 40 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 41 H 0.08 1.93 6.35 -2.39 -0.02 1.91 16 42 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -63.45 321.66 -0.17 -63.62 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 0.20 Total: 18.41 kcal Atomic # 6 Polarization: -27.46 SS G_CDS: 4.23 Total: -23.23 kcal Atomic # 7 Polarization: -99.07 SS G_CDS: -6.63 Total: -105.71 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -63.45 -0.17 -63.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037221664.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.869 kcal (2) G-P(sol) polarization free energy of solvation -63.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds