Wall clock time and date at job start Mon Mar 30 2020 03:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46899 * 109.46808 * 2 1 4 4 C 1.46906 * 111.00172 * 288.20201 * 3 2 1 5 5 C 1.52997 * 109.47224 * 160.48786 * 4 3 2 6 6 C 1.52998 * 109.47261 * 184.22768 * 5 4 3 7 7 C 1.50704 * 109.47216 * 180.02562 * 6 5 4 8 8 H 1.07996 * 119.99943 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00198 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99621 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00093 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47004 * 89.99701 * 11 9 7 13 13 H 1.48503 * 109.47034 * 209.99481 * 11 9 7 14 14 H 1.48502 * 109.47253 * 329.99537 * 11 9 7 15 15 C 1.46902 * 110.99764 * 164.25499 * 3 2 1 16 16 C 1.53118 * 109.51913 * 298.94945 * 15 3 2 17 17 C 1.53035 * 109.27743 * 177.56171 * 16 15 3 18 18 N 1.46853 * 109.52560 * 300.81996 * 17 16 15 19 19 C 1.46849 * 111.19150 * 61.74177 * 18 17 16 20 20 C 1.53033 * 109.52690 * 298.25627 * 19 18 17 21 21 H 1.09003 * 109.47501 * 60.14215 * 1 2 3 22 22 H 1.08996 * 109.47253 * 180.14300 * 1 2 3 23 23 H 1.08998 * 109.47092 * 300.14365 * 1 2 3 24 24 H 1.09005 * 109.46800 * 240.00208 * 2 1 3 25 25 H 1.08993 * 109.47085 * 120.00275 * 2 1 3 26 26 H 1.08996 * 109.47097 * 280.48956 * 4 3 2 27 27 H 1.09006 * 109.46818 * 40.49017 * 4 3 2 28 28 H 1.09004 * 109.47248 * 304.23020 * 5 4 3 29 29 H 1.09005 * 109.46958 * 64.22315 * 5 4 3 30 30 H 1.09003 * 109.46809 * 299.99614 * 6 5 4 31 31 H 1.08992 * 109.47336 * 60.00152 * 6 5 4 32 32 H 0.96998 * 119.99568 * 180.02562 * 10 9 7 33 33 H 1.09002 * 109.57095 * 178.79679 * 15 3 2 34 34 H 1.09005 * 109.50250 * 57.62378 * 16 15 3 35 35 H 1.09002 * 109.50906 * 297.50299 * 16 15 3 36 36 H 1.09001 * 109.46662 * 180.80946 * 17 16 15 37 37 H 1.09003 * 109.46305 * 60.83991 * 17 16 15 38 38 H 1.00898 * 111.00004 * 185.83640 * 18 17 16 39 39 H 1.09001 * 109.46220 * 58.27646 * 19 18 17 40 40 H 1.09004 * 109.45940 * 178.24233 * 19 18 17 41 41 H 1.08998 * 109.50706 * 299.24256 * 20 19 18 42 42 H 1.08992 * 109.50425 * 179.11981 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7912 2.0242 -1.3028 5 6 1.8469 3.5446 -1.1418 6 6 1.5051 4.2117 -2.4756 7 6 1.5606 5.7093 -2.3170 8 1 1.8139 6.1421 -1.3605 9 6 1.2870 6.5271 -3.3929 10 7 0.9781 6.0001 -4.5575 11 14 1.3551 8.3834 -3.1962 12 1 2.7278 8.8631 -3.4978 13 1 0.3926 9.0162 -4.1335 14 1 0.9991 8.7468 -1.8010 15 6 3.4396 1.4414 0.3722 16 6 3.6208 0.8800 1.7852 17 6 5.1085 0.8849 2.1438 18 7 5.8498 0.0679 1.1744 19 6 5.7292 0.6150 -0.1830 20 6 4.2601 0.6020 -0.6112 21 1 -0.3634 0.5116 -0.8913 22 1 -0.3633 -1.0276 0.0026 23 1 -0.3633 0.5161 0.8887 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5138 0.8899 26 1 2.5617 1.7047 -2.0044 27 1 0.8113 1.7347 -1.6827 28 1 1.1273 3.8564 -0.3846 29 1 2.8497 3.8408 -0.8337 30 1 2.2247 3.8999 -3.2326 31 1 0.5024 3.9155 -2.7835 32 1 0.7860 6.5754 -5.3145 33 1 3.7836 2.4753 0.3441 34 1 3.2408 -0.1409 1.8226 35 1 3.0732 1.4991 2.4958 36 1 5.2425 0.4725 3.1438 37 1 5.4846 1.9077 2.1196 38 1 6.8181 -0.0224 1.4432 39 1 6.1024 1.6391 -0.1963 40 1 6.3140 0.0066 -0.8730 41 1 3.8901 -0.4232 -0.6114 42 1 4.1691 1.0226 -1.6126 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037469485.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:28 Heat of formation + Delta-G solvation = -14.932179 kcal Electronic energy + Delta-G solvation = -18005.784779 eV Core-core repulsion = 15405.749107 eV Total energy + Delta-G solvation = -2600.035671 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.55054 -36.55985 -33.76287 -31.70912 -31.52362 -30.81922 -28.75503 -26.14947 -23.56985 -23.10735 -22.79824 -21.04266 -20.08826 -18.66066 -16.90902 -16.26194 -15.45450 -14.98993 -14.76467 -14.41721 -14.16286 -14.12055 -13.69394 -13.42364 -12.81775 -12.39487 -12.27541 -12.05935 -11.71283 -11.58083 -11.44289 -11.29385 -11.03358 -10.92402 -10.62373 -10.52161 -10.44138 -10.32429 -10.14088 -9.50499 -9.25920 -9.01184 -8.59645 -8.30669 -7.88671 -5.96167 -3.97839 3.33997 3.40065 3.44077 4.08904 4.16759 4.49858 4.81756 4.90437 5.06753 5.16049 5.22368 5.36692 5.39648 5.46098 5.52208 5.59577 5.65326 5.75137 5.75956 5.83535 5.84628 5.96417 6.05598 6.13541 6.17009 6.28678 6.35769 6.41377 6.50725 6.76334 6.88519 6.91452 7.20333 7.23141 7.48586 7.52380 7.73551 7.89580 8.05036 8.48899 9.09495 9.65886 11.15347 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025403 B = 0.005214 C = 0.004714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.961049 B = 5368.856640 C = 5938.480192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.045 3.955 3 N -0.531 5.531 4 C 0.050 3.950 5 C -0.100 4.100 6 C 0.022 3.978 7 C -0.517 4.517 8 H 0.054 0.946 9 C 0.056 3.944 10 N -0.897 5.897 11 Si 0.891 3.109 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.274 1.274 15 C 0.084 3.916 16 C -0.110 4.110 17 C 0.058 3.942 18 N -0.692 5.692 19 C 0.062 3.938 20 C -0.152 4.152 21 H 0.057 0.943 22 H 0.051 0.949 23 H 0.060 0.940 24 H 0.030 0.970 25 H 0.073 0.927 26 H 0.033 0.967 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.042 0.958 30 H 0.012 0.988 31 H 0.015 0.985 32 H 0.259 0.741 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.031 0.969 38 H 0.339 0.661 39 H 0.032 0.968 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.670 -13.242 11.032 18.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.083 4.083 3 N -0.254 5.254 4 C -0.077 4.077 5 C -0.138 4.138 6 C -0.016 4.016 7 C -0.555 4.555 8 H 0.072 0.928 9 C -0.145 4.145 10 N -0.537 5.537 11 Si 0.719 3.281 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.025 4.025 16 C -0.148 4.148 17 C -0.072 4.072 18 N -0.323 5.323 19 C -0.068 4.068 20 C -0.191 4.191 21 H 0.076 0.924 22 H 0.070 0.930 23 H 0.079 0.921 24 H 0.048 0.952 25 H 0.091 0.909 26 H 0.051 0.949 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.030 0.970 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.049 0.951 38 H 0.157 0.843 39 H 0.050 0.950 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.805 -13.375 11.120 18.337 hybrid contribution 1.100 1.408 -0.665 1.907 sum 6.905 -11.967 10.455 17.326 Atomic orbital electron populations 1.21794 0.95248 1.00732 1.02770 1.22128 0.95802 0.89986 1.00356 1.62323 1.15875 1.15993 1.31176 1.22392 1.00453 0.96811 0.88061 1.21585 1.00284 0.91195 1.00769 1.19072 0.96633 0.94820 0.91053 1.21261 1.46456 0.91698 0.96084 0.92753 1.25023 0.95427 0.98685 0.95365 1.69969 1.47762 1.35021 1.00912 0.86615 0.77758 0.85808 0.77952 1.20747 1.21243 1.19867 1.21752 0.87465 0.99440 0.93844 1.21690 0.94798 1.01761 0.96537 1.21927 0.94595 0.95246 0.95410 1.60316 1.16775 1.52845 1.02354 1.21848 0.97193 0.97724 0.90027 1.22287 0.95113 1.01412 1.00273 0.92409 0.92979 0.92074 0.95213 0.90913 0.94908 0.91209 0.92712 0.93923 0.96964 0.96677 0.93093 0.89915 0.91114 0.90881 0.90880 0.95086 0.84346 0.94998 0.91073 0.91234 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.97 37.16 0.37 -1.48 16 2 C 0.05 0.59 4.59 -3.82 -0.02 0.58 16 3 N -0.53 -8.11 4.38 -226.50 -0.99 -9.10 16 4 C 0.05 0.89 4.71 -3.82 -0.02 0.87 16 5 C -0.10 -2.15 5.19 -26.73 -0.14 -2.29 16 6 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 10 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 11 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 15 C 0.08 1.17 2.21 -67.59 -0.15 1.02 16 16 C -0.11 -1.30 5.29 -26.65 -0.14 -1.44 16 17 C 0.06 0.60 6.55 -3.83 -0.03 0.57 16 18 N -0.69 -7.16 6.85 -113.81 -0.78 -7.94 16 19 C 0.06 0.70 6.55 -3.83 -0.03 0.68 16 20 C -0.15 -1.98 4.76 -26.65 -0.13 -2.10 16 21 H 0.06 0.79 6.53 -51.93 -0.34 0.45 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.03 0.40 7.08 -51.93 -0.37 0.03 16 25 H 0.07 0.88 5.64 -51.93 -0.29 0.59 16 26 H 0.03 0.59 5.95 -51.93 -0.31 0.28 16 27 H 0.07 1.27 6.24 -51.93 -0.32 0.94 16 28 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.04 0.91 6.99 -51.93 -0.36 0.54 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.08 1.31 6.81 -51.93 -0.35 0.95 16 34 H 0.07 0.84 6.03 -51.93 -0.31 0.53 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.34 2.83 8.90 -39.29 -0.35 2.48 16 39 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.91 6.63 -51.93 -0.34 0.57 16 42 H 0.07 1.02 6.38 -51.93 -0.33 0.69 16 LS Contribution 315.37 15.07 4.75 4.75 Total: -1.00 -30.20 315.37 -9.58 -39.79 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -7.46 Total: -0.93 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -0.82 Total: -16.91 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: -1.04 Total: -43.69 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.20 -9.58 -39.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037469485.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.853 kcal (2) G-P(sol) polarization free energy of solvation -30.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds