Wall clock time and date at job start Mon Mar 30 2020 03:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46898 * 109.47303 * 2 1 4 4 C 1.47441 * 111.00302 * 63.95664 * 3 2 1 5 5 C 1.54323 * 107.37236 * 236.66518 * 4 3 2 6 6 C 1.55389 * 102.89892 * 337.89428 * 5 4 3 7 7 C 1.47854 * 110.99585 * 303.12028 * 3 2 1 8 8 H 1.08998 * 110.37525 * 27.53075 * 7 3 2 9 9 C 1.53004 * 110.36955 * 265.30163 * 7 3 2 10 10 N 1.46903 * 109.47306 * 55.00009 * 9 7 3 11 11 C 1.46902 * 111.00185 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46875 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.46703 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47215 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99918 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00163 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00454 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99937 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47156 * 90.00141 * 18 16 14 20 20 H 1.48497 * 109.47397 * 210.00214 * 18 16 14 21 21 H 1.48500 * 109.47331 * 330.00356 * 18 16 14 22 22 H 1.09003 * 109.47074 * 187.35045 * 1 2 3 23 23 H 1.09002 * 109.46921 * 307.34420 * 1 2 3 24 24 H 1.08990 * 109.47421 * 67.34446 * 1 2 3 25 25 H 1.08998 * 109.47081 * 239.99910 * 2 1 3 26 26 H 1.09004 * 109.47316 * 119.99349 * 2 1 3 27 27 H 1.08996 * 109.88602 * 356.15714 * 4 3 2 28 28 H 1.09003 * 109.88554 * 117.17777 * 4 3 2 29 29 H 1.09000 * 110.70273 * 96.18510 * 5 4 3 30 30 H 1.09003 * 110.70341 * 219.41507 * 5 4 3 31 31 H 1.08998 * 110.87390 * 277.39412 * 6 5 4 32 32 H 1.09002 * 111.05676 * 153.64761 * 6 5 4 33 33 H 1.09004 * 109.47231 * 174.99730 * 9 7 3 34 34 H 1.08995 * 109.47211 * 294.99993 * 9 7 3 35 35 H 1.00898 * 111.00004 * 303.95916 * 10 9 7 36 36 H 1.08992 * 109.46936 * 300.00276 * 11 10 9 37 37 H 1.08995 * 109.46753 * 60.00361 * 11 10 9 38 38 H 1.09002 * 109.46894 * 300.00290 * 12 11 10 39 39 H 1.08995 * 109.47203 * 60.00554 * 12 11 10 40 40 H 1.09002 * 109.47507 * 299.99700 * 13 12 11 41 41 H 1.09001 * 109.47341 * 59.99951 * 13 12 11 42 42 H 0.97000 * 120.00417 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6261 2.0846 1.2367 5 6 0.8327 3.3418 0.8223 6 6 1.3054 3.5846 -0.6379 7 6 1.4852 2.1358 -1.1561 8 1 0.5258 1.7220 -1.4667 9 6 2.4797 2.1029 -2.3184 10 7 2.8088 0.7083 -2.6419 11 6 3.7632 0.6375 -3.7565 12 6 4.0804 -0.8273 -4.0640 13 6 5.0748 -0.9010 -5.2243 14 6 5.3869 -2.3438 -5.5277 15 1 4.9227 -3.1296 -4.9503 16 6 6.2650 -2.6606 -6.5423 17 7 6.8307 -1.7038 -7.2452 18 14 6.6523 -4.4490 -6.9178 19 1 5.6905 -4.9626 -7.9261 20 1 8.0336 -4.5547 -7.4526 21 1 6.5405 -5.2516 -5.6734 22 1 -0.3633 -1.0192 0.1315 23 1 -0.3633 0.6234 0.8170 24 1 -0.3634 0.3958 -0.9483 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5137 0.8901 27 1 0.9989 1.4347 1.8468 28 1 2.5147 2.3750 1.7973 29 1 -0.2395 3.1482 0.8527 30 1 1.0909 4.1878 1.4593 31 1 2.2515 4.1256 -0.6550 32 1 0.5451 4.1133 -1.2129 33 1 2.0355 2.5831 -3.1904 34 1 3.3881 2.6341 -2.0344 35 1 3.1625 0.2228 -1.8312 36 1 3.3276 1.1074 -4.6381 37 1 4.6806 1.1586 -3.4828 38 1 4.5158 -1.2976 -3.1822 39 1 3.1629 -1.3480 -4.3378 40 1 4.6398 -0.4306 -6.1062 41 1 5.9924 -0.3803 -4.9501 42 1 7.4482 -1.9267 -7.9593 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042223562.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:27 Heat of formation + Delta-G solvation = -11.824581 kcal Electronic energy + Delta-G solvation = -17488.514564 eV Core-core repulsion = 14888.613648 eV Total energy + Delta-G solvation = -2599.900916 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.74242 -36.02830 -33.49076 -33.30892 -31.52366 -29.36053 -28.75178 -26.20838 -24.33909 -22.94851 -21.89755 -21.21908 -20.21193 -19.28633 -16.95754 -16.22173 -15.61401 -15.32128 -14.55263 -14.37968 -14.21331 -13.92877 -13.76102 -13.25371 -12.73652 -12.60789 -12.21523 -12.07733 -11.92715 -11.64427 -11.40109 -11.34296 -11.24216 -10.96301 -10.80682 -10.71298 -10.60817 -10.43308 -10.35993 -9.61381 -9.26091 -8.99063 -8.39078 -8.28981 -7.98302 -5.94231 -3.96038 3.35946 3.41718 3.45613 3.87159 4.32004 4.48343 4.51440 4.76881 4.80195 4.99043 5.13742 5.21774 5.28033 5.35312 5.40286 5.41478 5.55735 5.57434 5.65273 5.74312 5.78842 5.82988 5.92638 5.93897 6.00166 6.03070 6.21158 6.24343 6.43184 6.81495 6.85077 6.94434 7.04009 7.22394 7.49970 7.75037 7.82086 7.92028 8.06891 8.50429 9.11315 9.67596 11.17284 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.044473 B = 0.003798 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.438825 B = 7370.029887 C = 7774.354749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.038 3.962 3 N -0.525 5.525 4 C 0.040 3.960 5 C -0.141 4.141 6 C -0.125 4.125 7 C 0.067 3.933 8 H 0.070 0.930 9 C 0.075 3.925 10 N -0.692 5.692 11 C 0.058 3.942 12 C -0.106 4.106 13 C 0.022 3.978 14 C -0.517 4.517 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 H 0.059 0.941 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.096 0.904 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.030 0.970 35 H 0.344 0.656 36 H 0.064 0.936 37 H 0.023 0.977 38 H 0.044 0.956 39 H 0.054 0.946 40 H 0.015 0.985 41 H 0.014 0.986 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.846 9.652 16.300 22.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.090 4.090 3 N -0.249 5.249 4 C -0.088 4.088 5 C -0.179 4.179 6 C -0.164 4.164 7 C -0.041 4.041 8 H 0.088 0.912 9 C -0.055 4.055 10 N -0.325 5.325 11 C -0.070 4.070 12 C -0.144 4.144 13 C -0.016 4.016 14 C -0.556 4.556 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 H 0.078 0.922 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.114 0.886 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.164 0.836 36 H 0.082 0.918 37 H 0.041 0.959 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.034 0.966 41 H 0.032 0.968 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.708 9.555 15.727 22.364 hybrid contribution 0.206 -0.645 0.204 0.708 sum -12.502 8.909 15.932 22.125 Atomic orbital electron populations 1.22422 0.98341 1.02099 1.01825 1.22474 0.92981 0.90086 1.03492 1.63628 1.57457 1.02198 1.01618 1.22800 0.98639 0.94486 0.92881 1.22807 0.99771 0.98406 0.96924 1.22774 1.01780 0.96421 0.95404 1.22762 0.97624 0.92592 0.91156 0.91186 1.21859 0.97048 0.90774 0.95847 1.60697 1.47576 1.13145 1.11085 1.22103 0.92536 0.99240 0.93130 1.21605 1.00164 0.92680 0.99946 1.19068 0.93404 0.96853 0.92283 1.21272 1.25398 0.92566 1.16327 0.92695 1.25032 0.96108 0.97191 0.96241 1.69969 1.30259 1.31755 1.21695 0.86600 0.77494 0.85405 0.78533 1.20693 1.21289 1.19885 0.92194 0.93054 0.92002 0.88627 0.91192 0.92615 0.90840 0.91709 0.90953 0.90658 0.90913 0.91310 0.95175 0.83574 0.91787 0.95910 0.93758 0.92720 0.96631 0.96808 0.93087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.80 9.23 37.16 0.34 -1.45 16 2 C 0.04 0.41 5.50 -3.83 -0.02 0.39 16 3 N -0.53 -5.81 4.63 -223.38 -1.03 -6.84 16 4 C 0.04 0.36 6.23 -2.83 -0.02 0.35 16 5 C -0.14 -1.12 6.97 -24.77 -0.17 -1.29 16 6 C -0.13 -1.13 6.50 -24.46 -0.16 -1.29 16 7 C 0.07 0.74 2.58 -66.18 -0.17 0.57 16 8 H 0.07 0.81 5.47 -51.93 -0.28 0.52 16 9 C 0.07 0.99 5.52 -3.82 -0.02 0.97 16 10 N -0.69 -10.73 5.83 -113.78 -0.66 -11.39 16 11 C 0.06 1.07 5.69 -3.82 -0.02 1.05 16 12 C -0.11 -2.29 5.41 -26.73 -0.14 -2.43 16 13 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 14 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 15 H 0.05 1.56 7.74 -52.48 -0.41 1.15 16 16 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.59 13.29 55.43 0.74 -26.85 16 18 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 22 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.45 6.41 -51.93 -0.33 0.12 16 24 H 0.06 0.64 6.22 -51.93 -0.32 0.32 16 25 H 0.10 1.19 5.76 -51.93 -0.30 0.89 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.47 6.32 -51.93 -0.33 0.15 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.70 7.98 -51.93 -0.41 0.29 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.03 0.42 8.03 -51.93 -0.42 0.00 16 35 H 0.34 5.29 6.04 -39.29 -0.24 5.05 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 321.90 15.07 4.85 4.85 Total: -1.00 -30.23 321.90 -9.74 -39.97 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -7.67 Total: -0.23 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -0.94 Total: -16.61 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: -0.96 Total: -45.08 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.23 -9.74 -39.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042223562.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.145 kcal (2) G-P(sol) polarization free energy of solvation -30.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds