Wall clock time and date at job start Mon Mar 30 2020 03:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46898 * 109.47303 * 2 1 4 4 C 1.47441 * 111.00302 * 63.95664 * 3 2 1 5 5 C 1.54323 * 107.37236 * 236.66518 * 4 3 2 6 6 C 1.55389 * 102.89892 * 337.89428 * 5 4 3 7 7 C 1.47854 * 110.99585 * 303.12028 * 3 2 1 8 8 H 1.08998 * 110.37525 * 27.53075 * 7 3 2 9 9 C 1.53004 * 110.36955 * 265.30163 * 7 3 2 10 10 N 1.46903 * 109.47306 * 55.00009 * 9 7 3 11 11 C 1.46902 * 111.00185 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46875 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.46703 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47215 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99918 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00163 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00454 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99937 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47156 * 90.00141 * 18 16 14 20 20 H 1.48497 * 109.47397 * 210.00214 * 18 16 14 21 21 H 1.48500 * 109.47331 * 330.00356 * 18 16 14 22 22 H 1.09003 * 109.47074 * 187.35045 * 1 2 3 23 23 H 1.09002 * 109.46921 * 307.34420 * 1 2 3 24 24 H 1.08990 * 109.47421 * 67.34446 * 1 2 3 25 25 H 1.08998 * 109.47081 * 239.99910 * 2 1 3 26 26 H 1.09004 * 109.47316 * 119.99349 * 2 1 3 27 27 H 1.08996 * 109.88602 * 356.15714 * 4 3 2 28 28 H 1.09003 * 109.88554 * 117.17777 * 4 3 2 29 29 H 1.09000 * 110.70273 * 96.18510 * 5 4 3 30 30 H 1.09003 * 110.70341 * 219.41507 * 5 4 3 31 31 H 1.08998 * 110.87390 * 277.39412 * 6 5 4 32 32 H 1.09002 * 111.05676 * 153.64761 * 6 5 4 33 33 H 1.09004 * 109.47231 * 174.99730 * 9 7 3 34 34 H 1.08995 * 109.47211 * 294.99993 * 9 7 3 35 35 H 1.00898 * 111.00004 * 303.95916 * 10 9 7 36 36 H 1.08992 * 109.46936 * 300.00276 * 11 10 9 37 37 H 1.08995 * 109.46753 * 60.00361 * 11 10 9 38 38 H 1.09002 * 109.46894 * 300.00290 * 12 11 10 39 39 H 1.08995 * 109.47203 * 60.00554 * 12 11 10 40 40 H 1.09002 * 109.47507 * 299.99700 * 13 12 11 41 41 H 1.09001 * 109.47341 * 59.99951 * 13 12 11 42 42 H 0.97000 * 120.00417 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6261 2.0846 1.2367 5 6 0.8327 3.3418 0.8223 6 6 1.3054 3.5846 -0.6379 7 6 1.4852 2.1358 -1.1561 8 1 0.5258 1.7220 -1.4667 9 6 2.4797 2.1029 -2.3184 10 7 2.8088 0.7083 -2.6419 11 6 3.7632 0.6375 -3.7565 12 6 4.0804 -0.8273 -4.0640 13 6 5.0748 -0.9010 -5.2243 14 6 5.3869 -2.3438 -5.5277 15 1 4.9227 -3.1296 -4.9503 16 6 6.2650 -2.6606 -6.5423 17 7 6.8307 -1.7038 -7.2452 18 14 6.6523 -4.4490 -6.9178 19 1 5.6905 -4.9626 -7.9261 20 1 8.0336 -4.5547 -7.4526 21 1 6.5405 -5.2516 -5.6734 22 1 -0.3633 -1.0192 0.1315 23 1 -0.3633 0.6234 0.8170 24 1 -0.3634 0.3958 -0.9483 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5137 0.8901 27 1 0.9989 1.4347 1.8468 28 1 2.5147 2.3750 1.7973 29 1 -0.2395 3.1482 0.8527 30 1 1.0909 4.1878 1.4593 31 1 2.2515 4.1256 -0.6550 32 1 0.5451 4.1133 -1.2129 33 1 2.0355 2.5831 -3.1904 34 1 3.3881 2.6341 -2.0344 35 1 3.1625 0.2228 -1.8312 36 1 3.3276 1.1074 -4.6381 37 1 4.6806 1.1586 -3.4828 38 1 4.5158 -1.2976 -3.1822 39 1 3.1629 -1.3480 -4.3378 40 1 4.6398 -0.4306 -6.1062 41 1 5.9924 -0.3803 -4.9501 42 1 7.4482 -1.9267 -7.9593 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042223562.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:27 Heat of formation + Delta-G solvation = -31.275751 kcal Electronic energy + Delta-G solvation = -17489.358030 eV Core-core repulsion = 14888.613648 eV Total energy + Delta-G solvation = -2600.744382 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.57080 -37.47885 -35.41779 -34.10828 -33.28252 -30.63494 -29.52687 -27.93015 -25.53167 -24.31409 -23.13409 -22.17635 -21.78518 -20.26241 -18.48544 -17.81510 -16.66772 -16.55111 -16.31822 -15.57103 -15.26790 -15.15928 -14.83855 -14.44530 -14.07783 -13.94117 -13.55384 -13.30803 -13.12366 -12.87931 -12.73629 -12.52711 -12.44428 -12.31242 -12.18674 -12.02649 -11.86058 -11.54135 -11.46003 -11.38002 -11.31629 -11.02549 -10.54989 -9.38124 -9.11611 -8.19541 -6.30832 1.40308 1.42223 1.53452 2.41677 3.05429 3.13327 3.26302 3.74841 3.90005 4.09267 4.18436 4.21561 4.31792 4.37276 4.42763 4.44719 4.60699 4.65632 4.71072 4.74338 4.80783 4.89243 4.96905 5.00829 5.01138 5.07866 5.11365 5.17863 5.18832 5.26424 5.39672 5.42769 5.52247 5.75383 5.85975 6.05266 6.18277 6.22824 6.29300 6.55678 6.85938 7.38343 8.92541 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.044473 B = 0.003798 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.438825 B = 7370.029887 C = 7774.354749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.038 3.962 3 N -0.540 5.540 4 C 0.038 3.962 5 C -0.133 4.133 6 C -0.123 4.123 7 C 0.070 3.930 8 H 0.068 0.932 9 C 0.075 3.925 10 N -0.688 5.688 11 C 0.071 3.929 12 C -0.090 4.090 13 C 0.025 3.975 14 C -0.543 4.543 15 H 0.060 0.940 16 C -0.002 4.002 17 N -0.934 5.934 18 Si 0.967 3.033 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.263 1.263 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.052 0.948 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.024 0.976 35 H 0.346 0.654 36 H 0.061 0.939 37 H 0.017 0.983 38 H 0.047 0.953 39 H 0.053 0.947 40 H -0.008 1.008 41 H -0.011 1.011 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.847 9.268 17.523 24.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.090 4.090 3 N -0.265 5.265 4 C -0.090 4.090 5 C -0.172 4.172 6 C -0.161 4.161 7 C -0.038 4.038 8 H 0.085 0.915 9 C -0.055 4.055 10 N -0.321 5.321 11 C -0.058 4.058 12 C -0.128 4.128 13 C -0.013 4.013 14 C -0.581 4.581 15 H 0.078 0.922 16 C -0.200 4.200 17 N -0.575 5.575 18 Si 0.791 3.209 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.187 1.187 22 H 0.083 0.917 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.042 0.958 35 H 0.167 0.833 36 H 0.079 0.921 37 H 0.035 0.965 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.010 0.990 41 H 0.008 0.992 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.726 9.179 16.972 23.679 hybrid contribution 0.530 -0.487 -0.166 0.738 sum -13.196 8.691 16.806 23.068 Atomic orbital electron populations 1.22342 0.97313 1.02589 1.01695 1.22417 0.93816 0.89964 1.02791 1.63572 1.58054 1.02460 1.02374 1.22845 0.98994 0.95054 0.92068 1.22786 0.99983 0.98244 0.96146 1.22768 1.02097 0.94932 0.96313 1.22687 0.96489 0.94150 0.90516 0.91455 1.21946 0.97457 0.89050 0.97079 1.60658 1.46143 1.14891 1.10415 1.21826 0.93015 0.96697 0.94273 1.21353 0.98517 0.95061 0.97893 1.18974 0.93469 0.95577 0.93247 1.21700 1.25891 0.93671 1.16860 0.92226 1.26016 0.95726 1.02362 0.95882 1.70102 1.30799 1.34353 1.22232 0.85415 0.77486 0.79188 0.78764 1.19681 1.20649 1.18705 0.91699 0.92004 0.92909 0.90598 0.90592 0.91801 0.90976 0.90919 0.89557 0.91059 0.89686 0.91059 0.95763 0.83347 0.92084 0.96521 0.93446 0.92833 0.99009 0.99226 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.16 9.23 71.98 0.66 -2.50 16 2 C 0.04 0.78 5.50 86.30 0.47 1.26 16 3 N -0.54 -11.24 4.63 -860.63 -3.99 -15.23 16 4 C 0.04 0.62 6.23 86.65 0.54 1.16 16 5 C -0.13 -1.78 6.97 31.86 0.22 -1.56 16 6 C -0.12 -1.97 6.50 32.07 0.21 -1.76 16 7 C 0.07 1.45 2.58 45.38 0.12 1.57 16 8 H 0.07 1.46 5.47 -2.39 -0.01 1.45 16 9 C 0.07 1.92 5.52 86.30 0.48 2.39 16 10 N -0.69 -21.10 5.83 -513.88 -3.00 -24.10 16 11 C 0.07 2.63 5.69 86.30 0.49 3.12 16 12 C -0.09 -3.95 5.41 30.59 0.17 -3.78 16 13 C 0.02 1.38 4.97 29.85 0.15 1.53 16 14 C -0.54 -32.06 9.11 25.60 0.23 -31.82 16 15 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 16 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 17 N -0.93 -58.28 13.29 21.45 0.28 -58.00 16 18 Si 0.97 45.24 29.54 68.60 2.03 47.26 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 21 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 22 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.06 0.94 6.41 -2.39 -0.02 0.93 16 24 H 0.05 1.02 6.22 -2.39 -0.01 1.01 16 25 H 0.08 1.85 5.76 -2.39 -0.01 1.83 16 26 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 27 H 0.06 0.93 6.32 -2.39 -0.02 0.92 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 1.21 7.98 -2.39 -0.02 1.20 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 34 H 0.02 0.66 8.03 -2.39 -0.02 0.64 16 35 H 0.35 10.52 6.04 -89.70 -0.54 9.98 16 36 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 40 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 41 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 42 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -64.47 321.90 -0.04 -64.52 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.42 Total: 15.62 kcal Atomic # 6 Polarization: -34.28 SS G_CDS: 4.20 Total: -30.08 kcal Atomic # 7 Polarization: -90.63 SS G_CDS: -6.70 Total: -97.32 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -64.47 -0.04 -64.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042223562.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.244 kcal (2) G-P(sol) polarization free energy of solvation -64.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds