Wall clock time and date at job start Mon Mar 30 2020 03:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47039 * 2 1 4 4 C 1.50699 * 109.47379 * 120.00152 * 2 1 3 5 5 H 1.07998 * 119.99831 * 119.99871 * 4 2 1 6 6 C 1.37873 * 119.99844 * 300.00343 * 4 2 1 7 7 N 1.31513 * 120.00095 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00043 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47128 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47177 * 119.99579 * 8 6 4 11 11 H 1.48502 * 109.47311 * 239.99690 * 8 6 4 12 12 N 1.46903 * 109.47004 * 240.00241 * 2 1 3 13 13 C 1.46963 * 110.99595 * 296.17766 * 12 2 1 14 14 C 1.53056 * 109.35944 * 183.16796 * 13 12 2 15 15 N 1.46956 * 109.38342 * 301.62902 * 14 13 12 16 16 C 1.46899 * 111.00293 * 183.17592 * 15 14 13 17 17 C 1.53009 * 109.46725 * 60.00029 * 16 15 14 18 18 C 1.52992 * 109.47300 * 179.97438 * 16 15 14 19 19 C 1.52999 * 109.47178 * 300.00482 * 16 15 14 20 20 C 1.46962 * 110.87987 * 59.31148 * 15 14 13 21 21 C 1.46956 * 111.00102 * 59.99751 * 12 2 1 22 22 H 1.09006 * 109.47022 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47293 * 299.99514 * 1 2 3 24 24 H 1.09000 * 109.47434 * 59.99800 * 1 2 3 25 25 H 0.97007 * 119.99909 * 180.02562 * 7 6 4 26 26 H 1.08992 * 109.47287 * 63.21185 * 13 12 2 27 27 H 1.08994 * 109.50466 * 303.13858 * 13 12 2 28 28 H 1.09002 * 109.48813 * 181.65179 * 14 13 12 29 29 H 1.09002 * 109.48870 * 61.61068 * 14 13 12 30 30 H 1.09003 * 109.46600 * 59.99927 * 17 16 15 31 31 H 1.08995 * 109.46842 * 179.97438 * 17 16 15 32 32 H 1.08995 * 109.47334 * 300.00443 * 17 16 15 33 33 H 1.08996 * 109.47124 * 60.00456 * 18 16 15 34 34 H 1.09003 * 109.46907 * 180.02562 * 18 16 15 35 35 H 1.09005 * 109.47493 * 300.00103 * 18 16 15 36 36 H 1.09000 * 109.47434 * 59.99618 * 19 16 15 37 37 H 1.09003 * 109.47059 * 179.97438 * 19 16 15 38 38 H 1.08996 * 109.47039 * 299.99418 * 19 16 15 39 39 H 1.09001 * 109.48625 * 60.64585 * 20 15 14 40 40 H 1.09003 * 109.48941 * 180.69193 * 20 15 14 41 41 H 1.09002 * 109.48806 * 56.84348 * 21 12 2 42 42 H 1.09003 * 109.49203 * 296.77991 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9435 0.8301 2.6034 8 14 2.3214 -1.1204 4.0078 9 1 3.1456 -2.2878 3.6037 10 1 3.1467 -0.1875 4.8164 11 1 1.1661 -1.5868 4.8160 12 7 2.0196 -0.6925 -1.1995 13 6 1.6245 -2.1079 -1.1886 14 6 2.2191 -2.8102 -2.4116 15 7 1.7479 -2.1438 -3.6337 16 6 2.2375 -2.8362 -4.8332 17 6 1.7276 -4.2788 -4.8332 18 6 1.7270 -2.1153 -6.0823 19 6 3.7675 -2.8362 -4.8332 20 6 2.1434 -0.7284 -3.6443 21 6 1.5484 -0.0261 -2.4216 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 0.7095 1.1616 3.4844 26 1 0.5375 -2.1820 -1.2194 27 1 1.9960 -2.5825 -0.2804 28 1 1.9032 -3.8534 -2.4213 29 1 3.3070 -2.7601 -2.3665 30 1 0.6375 -4.2787 -4.8331 31 1 2.0905 -4.7924 -5.7234 32 1 2.0909 -4.7926 -3.9433 33 1 2.0899 -1.0875 -6.0826 34 1 2.0900 -2.6294 -6.9723 35 1 0.6369 -2.1157 -6.0821 36 1 4.1309 -3.3500 -3.9432 37 1 4.1309 -3.3503 -5.7230 38 1 4.1308 -1.8085 -4.8332 39 1 3.2304 -0.6544 -3.6130 40 1 1.7725 -0.2540 -4.5529 41 1 1.8643 1.0171 -2.4119 42 1 0.4605 -0.0764 -2.4669 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042375334.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:10 Heat of formation + Delta-G solvation = 11.795059 kcal Electronic energy + Delta-G solvation = -18747.489923 eV Core-core repulsion = 16148.613231 eV Total energy + Delta-G solvation = -2598.876691 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.55556 -36.84732 -33.40969 -31.61044 -30.62548 -28.39955 -27.29709 -27.25143 -25.27404 -24.70391 -22.53885 -20.90227 -19.25364 -18.08963 -16.23083 -16.05507 -14.81867 -14.60995 -14.27247 -14.20939 -14.02336 -13.49023 -13.38058 -13.21636 -12.56613 -12.27952 -11.85749 -11.82378 -11.77530 -11.61519 -11.15393 -11.04424 -10.98938 -10.88387 -10.70896 -10.60329 -10.42908 -10.22608 -10.05927 -9.83567 -9.51835 -8.77099 -8.36614 -7.93213 -7.04452 -5.98567 -4.02369 3.31160 3.39012 3.43148 4.13678 4.43442 4.86489 4.94540 5.09550 5.21997 5.33616 5.42246 5.54552 5.60406 5.64439 5.79663 5.84052 5.87616 5.89814 5.91549 5.96006 6.02821 6.11085 6.17060 6.24459 6.37720 6.43395 6.57044 6.73367 6.76401 6.90926 6.94789 7.20248 7.42004 7.46042 7.62195 7.78758 7.87055 8.16754 8.44894 8.66179 9.03971 9.62763 11.08549 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.040634 B = 0.006011 C = 0.005612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.913329 B = 4657.120974 C = 4987.823479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.211 3.789 3 H 0.038 0.962 4 C -0.500 4.500 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.533 5.533 13 C 0.065 3.935 14 C 0.052 3.948 15 N -0.526 5.526 16 C 0.099 3.901 17 C -0.138 4.138 18 C -0.139 4.139 19 C -0.180 4.180 20 C 0.056 3.944 21 C 0.054 3.946 22 H 0.028 0.972 23 H 0.086 0.914 24 H 0.009 0.991 25 H 0.259 0.741 26 H 0.032 0.968 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.039 0.961 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.038 0.962 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.750 -6.431 -14.172 15.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.104 3.896 3 H 0.056 0.944 4 C -0.539 4.539 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.257 5.257 13 C -0.063 4.063 14 C -0.076 4.076 15 N -0.251 5.251 16 C 0.010 3.990 17 C -0.196 4.196 18 C -0.197 4.197 19 C -0.238 4.238 20 C -0.072 4.072 21 C -0.075 4.075 22 H 0.047 0.953 23 H 0.104 0.896 24 H 0.028 0.972 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.104 0.896 28 H 0.088 0.912 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.056 0.944 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.674 -6.312 -14.023 15.469 hybrid contribution 0.268 -0.345 0.919 1.018 sum 1.942 -6.657 -13.104 14.826 Atomic orbital electron populations 1.22370 1.00836 0.99261 1.00437 1.19275 0.89784 0.94541 0.85972 0.94384 1.21181 1.30488 1.12404 0.89804 0.91935 1.24928 0.95239 0.95119 0.98984 1.69905 1.37122 1.23065 1.23210 0.86491 0.78516 0.79659 0.83029 1.19794 1.21095 1.21186 1.62499 1.59228 1.01676 1.02346 1.22013 0.97749 0.90228 0.96338 1.22343 0.98021 0.97558 0.89629 1.62421 1.59085 1.02282 1.01311 1.21047 0.92305 0.94514 0.91175 1.21874 1.01743 0.94626 1.01311 1.21900 1.01742 1.00144 0.95886 1.22476 0.97295 1.02148 1.01914 1.22243 0.98338 0.88383 0.98245 1.22065 0.97721 0.97409 0.90268 0.95292 0.89555 0.97182 0.93112 0.94979 0.89633 0.91194 0.94312 0.91970 0.92736 0.92446 0.92470 0.92698 0.91959 0.92218 0.92670 0.92388 0.94360 0.91139 0.91540 0.94635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.20 8.27 37.16 0.31 -3.89 16 2 C 0.21 5.36 2.42 -68.86 -0.17 5.19 16 3 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 4 C -0.50 -13.70 7.89 -34.44 -0.27 -13.97 16 5 H 0.06 1.71 6.41 -52.49 -0.34 1.38 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -25.60 11.32 55.43 0.63 -24.98 16 8 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 N -0.53 -11.66 4.73 -227.87 -1.08 -12.74 16 13 C 0.07 1.32 4.93 -3.76 -0.02 1.30 16 14 C 0.05 0.86 4.82 -3.76 -0.02 0.85 16 15 N -0.53 -8.03 4.53 -218.81 -0.99 -9.02 16 16 C 0.10 1.23 0.71 -131.60 -0.09 1.13 16 17 C -0.14 -1.54 8.24 37.16 0.31 -1.23 16 18 C -0.14 -1.51 8.13 37.15 0.30 -1.21 16 19 C -0.18 -2.13 7.78 37.16 0.29 -1.84 16 20 C 0.06 0.88 4.83 -3.76 -0.02 0.86 16 21 C 0.05 1.03 5.13 -3.77 -0.02 1.01 16 22 H 0.03 0.70 6.56 -51.93 -0.34 0.36 16 23 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 24 H 0.01 0.21 6.48 -51.93 -0.34 -0.12 16 25 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.03 0.68 6.56 -51.93 -0.34 0.34 16 27 H 0.09 1.86 6.14 -51.93 -0.32 1.54 16 28 H 0.07 1.05 6.14 -51.93 -0.32 0.73 16 29 H 0.04 0.66 6.48 -51.93 -0.34 0.32 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.66 6.34 -51.93 -0.33 0.33 16 33 H 0.06 0.62 6.28 -51.93 -0.33 0.30 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.75 6.48 -51.93 -0.34 0.42 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.72 6.56 -51.93 -0.34 0.38 16 39 H 0.04 0.62 6.57 -51.93 -0.34 0.28 16 40 H 0.07 0.98 6.06 -51.93 -0.31 0.67 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.04 0.71 6.48 -51.93 -0.34 0.37 16 LS Contribution 300.80 15.07 4.53 4.53 Total: -1.00 -28.06 300.80 -8.49 -36.54 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -7.06 Total: -0.43 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: 0.50 Total: -10.28 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: -1.44 Total: -46.74 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.06 -8.49 -36.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042375334.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.340 kcal (2) G-P(sol) polarization free energy of solvation -28.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds