Wall clock time and date at job start Mon Mar 30 2020 03:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46898 * 109.47475 * 2 1 4 4 C 1.46852 * 111.00323 * 170.00088 * 3 2 1 5 5 C 1.53034 * 109.52567 * 185.83644 * 4 3 2 6 6 C 1.53117 * 109.28178 * 300.82609 * 5 4 3 7 7 N 1.46894 * 109.52268 * 177.56007 * 6 5 4 8 8 C 1.46906 * 110.99969 * 295.17671 * 7 6 5 9 9 C 1.46905 * 110.99969 * 171.22610 * 7 6 5 10 10 H 1.08991 * 109.47038 * 59.70308 * 9 7 6 11 11 C 1.53001 * 109.46744 * 179.70235 * 9 7 6 12 12 C 1.50701 * 109.46671 * 299.69694 * 9 7 6 13 13 H 1.07997 * 120.00059 * 0.02562 * 12 9 7 14 14 C 1.37875 * 119.99393 * 179.97438 * 12 9 7 15 15 N 1.31516 * 119.99739 * 180.02562 * 14 12 9 16 16 Si 1.86798 * 120.00390 * 0.02562 * 14 12 9 17 17 H 1.48497 * 109.47060 * 89.99884 * 16 14 12 18 18 H 1.48496 * 109.47255 * 209.99680 * 16 14 12 19 19 H 1.48496 * 109.47026 * 329.99999 * 16 14 12 20 20 C 1.53118 * 109.21496 * 57.61777 * 6 5 4 21 21 C 1.46847 * 110.99971 * 294.21010 * 3 2 1 22 22 H 1.08998 * 109.46995 * 300.00361 * 1 2 3 23 23 H 1.09003 * 109.47066 * 59.99558 * 1 2 3 24 24 H 1.08998 * 109.47267 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46836 * 240.00113 * 2 1 3 26 26 H 1.08993 * 109.47170 * 120.00449 * 2 1 3 27 27 H 1.09007 * 109.45664 * 65.82450 * 4 3 2 28 28 H 1.08997 * 109.46147 * 305.85832 * 4 3 2 29 29 H 1.08996 * 109.50509 * 180.87653 * 5 4 3 30 30 H 1.09005 * 109.49996 * 60.76563 * 5 4 3 31 31 H 1.09004 * 109.51710 * 297.68429 * 6 5 4 32 32 H 1.09003 * 109.47009 * 296.04713 * 8 7 6 33 33 H 1.08996 * 109.47171 * 56.04342 * 8 7 6 34 34 H 1.09002 * 109.47345 * 176.05061 * 8 7 6 35 35 H 1.09008 * 109.46782 * 173.61179 * 11 9 7 36 36 H 1.08994 * 109.47378 * 53.61386 * 11 9 7 37 37 H 1.09002 * 109.47129 * 293.60489 * 11 9 7 38 38 H 0.96998 * 120.00331 * 180.02562 * 15 14 12 39 39 H 1.09003 * 109.49886 * 62.31979 * 20 6 5 40 40 H 1.09002 * 109.49953 * 182.43867 * 20 6 5 41 41 H 1.08999 * 109.46613 * 294.17672 * 21 3 2 42 42 H 1.08997 * 109.46100 * 54.15997 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4681 1.4310 0.2380 5 6 3.9176 2.8873 0.3761 6 6 3.5677 3.6482 -0.9057 7 7 3.9440 5.0603 -0.7567 8 6 3.1472 5.7095 0.2929 9 6 3.8169 5.7765 -2.0330 10 1 2.7853 5.7201 -2.3801 11 6 4.2095 7.2422 -1.8365 12 6 4.7264 5.1457 -3.0557 13 1 5.3374 4.2973 -2.7848 14 6 4.7777 5.6510 -4.3375 15 7 5.5710 5.1002 -5.2301 16 14 3.7204 7.1179 -4.8062 17 1 4.4719 8.3724 -4.5478 18 1 3.3729 7.0372 -6.2477 19 1 2.4762 7.1104 -3.9958 20 6 2.0611 3.5440 -1.1582 21 6 1.6651 2.0685 -1.2504 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.9888 0.9682 -0.6003 28 1 3.7029 0.8900 1.1546 29 1 4.9951 2.9219 0.5372 30 1 3.4076 3.3469 1.2228 31 1 4.1088 3.2138 -1.7464 32 1 2.0974 5.7174 -0.0004 33 1 3.2592 5.1591 1.2270 34 1 3.4936 6.7338 0.4309 35 1 4.2249 7.7469 -2.8026 36 1 5.1991 7.2956 -1.3829 37 1 3.4840 7.7284 -1.1842 38 1 5.6075 5.4559 -6.1318 39 1 1.5210 4.0142 -0.3364 40 1 1.8131 4.0474 -2.0927 41 1 2.1943 1.6027 -2.0817 42 1 0.5904 1.9907 -1.4146 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042679769.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:32 Heat of formation + Delta-G solvation = -7.192497 kcal Electronic energy + Delta-G solvation = -18713.930281 eV Core-core repulsion = 16114.230228 eV Total energy + Delta-G solvation = -2599.700054 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.68860 -38.35308 -35.21696 -33.88329 -31.87466 -31.61876 -29.78659 -27.86948 -26.05394 -24.48243 -24.21765 -22.20902 -21.29059 -20.21625 -18.67048 -17.47804 -16.99813 -16.28388 -16.03054 -15.49194 -15.39265 -15.09509 -14.74968 -14.48090 -14.37933 -14.23263 -13.86366 -13.33599 -13.24664 -12.73657 -12.70171 -12.62590 -12.45636 -12.32411 -12.27663 -11.96207 -11.88895 -11.80403 -11.44835 -11.32178 -11.02175 -10.98007 -10.71781 -9.30078 -8.84434 -8.28128 -6.29904 1.28131 1.33026 1.43120 2.30733 2.94364 3.05510 3.26832 3.89592 3.92542 4.13066 4.22348 4.31185 4.38393 4.45799 4.50831 4.55332 4.61085 4.65893 4.69457 4.72263 4.75096 4.80738 4.83547 4.88848 4.95309 4.97975 5.05678 5.12607 5.15657 5.21598 5.33434 5.37815 5.49062 5.50840 5.67893 6.06174 6.12288 6.19448 6.47032 6.74786 6.78746 7.34489 8.88548 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.029041 B = 0.006925 C = 0.006456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.917844 B = 4042.186854 C = 4335.715925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.047 3.953 3 N -0.538 5.538 4 C 0.061 3.939 5 C -0.097 4.097 6 C 0.092 3.908 7 N -0.536 5.536 8 C 0.019 3.981 9 C 0.184 3.816 10 H -0.008 1.008 11 C -0.143 4.143 12 C -0.498 4.498 13 H 0.036 0.964 14 C 0.011 3.989 15 N -0.950 5.950 16 Si 0.947 3.053 17 H -0.265 1.265 18 H -0.299 1.299 19 H -0.252 1.252 20 C -0.137 4.137 21 C 0.065 3.935 22 H 0.062 0.938 23 H 0.047 0.953 24 H 0.074 0.926 25 H 0.025 0.975 26 H 0.088 0.912 27 H 0.017 0.983 28 H 0.097 0.903 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.047 0.953 32 H 0.022 0.978 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.032 0.968 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.264 0.736 39 H 0.078 0.922 40 H 0.043 0.957 41 H 0.013 0.987 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.235 -5.647 12.706 17.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.081 4.081 3 N -0.263 5.263 4 C -0.068 4.068 5 C -0.135 4.135 6 C -0.017 4.017 7 N -0.258 5.258 8 C -0.129 4.129 9 C 0.076 3.924 10 H 0.009 0.991 11 C -0.201 4.201 12 C -0.537 4.537 13 H 0.054 0.946 14 C -0.186 4.186 15 N -0.591 5.591 16 Si 0.775 3.225 17 H -0.191 1.191 18 H -0.227 1.227 19 H -0.177 1.177 20 C -0.176 4.176 21 C -0.063 4.063 22 H 0.081 0.919 23 H 0.066 0.934 24 H 0.093 0.907 25 H 0.043 0.957 26 H 0.106 0.894 27 H 0.036 0.964 28 H 0.115 0.885 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.051 0.949 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.061 0.939 41 H 0.031 0.969 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.896 -5.361 13.071 17.249 hybrid contribution -0.299 0.148 -2.000 2.028 sum -10.195 -5.213 11.071 15.927 Atomic orbital electron populations 1.21771 0.93903 1.02334 1.02110 1.22167 0.96966 0.87932 1.01010 1.62054 1.13845 1.16267 1.34173 1.22076 0.87171 0.96719 1.00805 1.21563 1.00842 0.94224 0.96911 1.21576 0.93218 0.89062 0.97845 1.62097 1.54826 1.01893 1.07030 1.22524 0.95003 1.00055 0.95317 1.19507 0.93696 0.91618 0.87571 0.99099 1.22127 1.01730 0.96692 0.99504 1.21185 1.23287 1.14726 0.94490 0.94555 1.25761 0.96559 0.99926 0.96350 1.70038 1.40598 1.43650 1.04781 0.85876 0.80361 0.80126 0.76152 1.19081 1.22735 1.17664 1.22101 0.97999 0.96527 1.01019 1.21962 1.00804 0.93673 0.89905 0.91877 0.93390 0.90727 0.95711 0.89369 0.96423 0.88462 0.91643 0.90231 0.93513 0.95926 0.90219 0.91210 0.94918 0.92439 0.91908 0.92668 0.90382 0.93859 0.96873 0.89526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.84 71.98 0.71 -1.85 16 2 C 0.05 0.98 5.68 86.30 0.49 1.47 16 3 N -0.54 -14.12 4.66 -896.35 -4.18 -18.30 16 4 C 0.06 1.64 5.46 86.32 0.47 2.11 16 5 C -0.10 -2.99 5.34 30.64 0.16 -2.83 16 6 C 0.09 3.55 2.07 45.00 0.09 3.65 16 7 N -0.54 -21.89 4.58 -875.72 -4.01 -25.90 16 8 C 0.02 0.60 8.24 127.69 1.05 1.65 16 9 C 0.18 8.70 1.44 44.17 0.06 8.77 16 10 H -0.01 -0.41 5.68 -2.39 -0.01 -0.42 16 11 C -0.14 -6.09 8.09 71.98 0.58 -5.51 16 12 C -0.50 -28.79 8.39 25.60 0.21 -28.57 16 13 H 0.04 2.36 7.00 -2.91 -0.02 2.34 16 14 C 0.01 0.63 5.45 84.65 0.46 1.09 16 15 N -0.95 -60.16 13.96 21.45 0.30 -59.86 16 16 Si 0.95 45.67 24.42 68.60 1.68 47.35 16 17 H -0.26 -12.11 6.82 99.48 0.68 -11.43 16 18 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 19 H -0.25 -11.39 6.53 99.48 0.65 -10.74 16 20 C -0.14 -4.77 4.67 30.65 0.14 -4.63 16 21 C 0.07 1.97 5.29 86.33 0.46 2.43 16 22 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.05 0.92 6.43 -2.39 -0.02 0.91 16 24 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 25 H 0.02 0.55 8.12 -2.39 -0.02 0.53 16 26 H 0.09 1.56 7.99 -2.39 -0.02 1.54 16 27 H 0.02 0.53 8.14 -2.38 -0.02 0.51 16 28 H 0.10 2.12 8.02 -2.39 -0.02 2.10 16 29 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.08 2.23 6.34 -2.38 -0.02 2.22 16 31 H 0.05 2.25 6.25 -2.38 -0.01 2.23 16 32 H 0.02 0.70 6.41 -2.39 -0.02 0.69 16 33 H 0.08 2.20 6.21 -2.39 -0.01 2.19 16 34 H 0.07 2.10 6.38 -2.39 -0.02 2.09 16 35 H 0.03 1.44 3.22 -2.38 -0.01 1.44 16 36 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.06 2.21 6.73 -2.39 -0.02 2.20 16 38 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 39 H 0.08 2.50 6.29 -2.39 -0.02 2.48 16 40 H 0.04 1.72 6.77 -2.39 -0.02 1.70 16 41 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.09 2.32 6.21 -2.39 -0.01 2.31 16 Total: -1.00 -65.34 299.23 -0.42 -65.76 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.90 Total: 13.17 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: 4.90 Total: -22.22 kcal Atomic # 7 Polarization: -96.17 SS G_CDS: -7.89 Total: -104.06 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.68 Total: 47.35 kcal Total: -65.34 -0.42 -65.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042679769.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.568 kcal (2) G-P(sol) polarization free energy of solvation -65.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds