Wall clock time and date at job start Mon Mar 30 2020 03:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46903 * 109.46772 * 2 1 4 4 C 1.46850 * 110.99555 * 170.00096 * 3 2 1 5 5 C 1.53036 * 109.51774 * 185.83738 * 4 3 2 6 6 C 1.53118 * 109.27851 * 300.81531 * 5 4 3 7 7 N 1.46901 * 109.52050 * 177.55963 * 6 5 4 8 8 C 1.46900 * 111.00402 * 298.95627 * 7 6 5 9 9 C 1.46905 * 111.00050 * 174.99760 * 7 6 5 10 10 H 1.09009 * 109.46628 * 60.00723 * 9 7 6 11 11 C 1.52992 * 109.47234 * 300.00906 * 9 7 6 12 12 C 1.50697 * 109.47135 * 180.02562 * 9 7 6 13 13 H 1.07996 * 120.00003 * 5.62360 * 12 9 7 14 14 C 1.37882 * 119.99881 * 185.61719 * 12 9 7 15 15 N 1.31507 * 120.00303 * 196.38913 * 14 12 9 16 16 Si 1.86799 * 119.99805 * 16.65903 * 14 12 9 17 17 H 1.48503 * 109.47293 * 179.72543 * 16 14 12 18 18 H 1.48508 * 109.47275 * 299.72627 * 16 14 12 19 19 H 1.48499 * 109.47381 * 59.72851 * 16 14 12 20 20 C 1.53120 * 109.15690 * 57.66086 * 6 5 4 21 21 C 1.46844 * 110.99667 * 294.20379 * 3 2 1 22 22 H 1.09001 * 109.47366 * 60.00502 * 1 2 3 23 23 H 1.09002 * 109.46972 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47304 * 300.00081 * 1 2 3 25 25 H 1.08995 * 109.47524 * 239.99483 * 2 1 3 26 26 H 1.09000 * 109.46651 * 119.99710 * 2 1 3 27 27 H 1.09001 * 109.46418 * 65.81919 * 4 3 2 28 28 H 1.08999 * 109.45024 * 305.84382 * 4 3 2 29 29 H 1.09005 * 109.49860 * 180.87596 * 5 4 3 30 30 H 1.08996 * 109.50810 * 60.76317 * 5 4 3 31 31 H 1.08996 * 109.52548 * 297.68810 * 6 5 4 32 32 H 1.08995 * 109.47090 * 296.04726 * 8 7 6 33 33 H 1.08999 * 109.46714 * 56.04921 * 8 7 6 34 34 H 1.09001 * 109.47106 * 176.04760 * 8 7 6 35 35 H 1.09002 * 109.47117 * 307.10980 * 11 9 7 36 36 H 1.09003 * 109.47622 * 67.11114 * 11 9 7 37 37 H 1.09000 * 109.47371 * 187.11365 * 11 9 7 38 38 H 0.97006 * 119.99645 * 355.27842 * 15 14 12 39 39 H 1.09002 * 109.50329 * 62.28743 * 20 6 5 40 40 H 1.09009 * 109.50096 * 182.40183 * 20 6 5 41 41 H 1.08996 * 109.46637 * 294.17830 * 21 3 2 42 42 H 1.09009 * 109.46326 * 54.15182 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4679 1.4311 0.2380 5 6 3.9173 2.8875 0.3761 6 6 3.5675 3.6482 -0.9058 7 7 3.9436 5.0604 -0.7568 8 6 3.2108 5.6863 0.3519 9 6 3.7318 5.7968 -2.0102 10 1 2.6795 5.7430 -2.2896 11 6 4.5858 5.1757 -3.1172 12 6 4.1282 7.2381 -1.8192 13 1 4.5848 7.5543 -0.8930 14 6 3.9083 8.1529 -2.8270 15 7 4.5265 9.3135 -2.8081 16 14 2.7262 7.7469 -4.2153 17 1 2.6614 8.8903 -5.1607 18 1 3.2027 6.5374 -4.9333 19 1 1.3749 7.4902 -3.6558 20 6 2.0606 3.5438 -1.1567 21 6 1.6650 2.0684 -1.2504 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8900 27 1 3.9887 0.9682 -0.6002 28 1 3.7025 0.8902 1.1548 29 1 4.9948 2.9221 0.5373 30 1 3.4073 3.3471 1.2227 31 1 4.1086 3.2139 -1.7464 32 1 2.1446 5.6914 0.1256 33 1 3.3852 5.1213 1.2675 34 1 3.5589 6.7106 0.4851 35 1 5.6222 5.1143 -2.7853 36 1 4.2167 4.1752 -3.3429 37 1 4.5271 5.7951 -4.0122 38 1 5.0838 9.5538 -2.0514 39 1 1.5213 4.0138 -0.3343 40 1 1.8115 4.0474 -2.0909 41 1 2.1943 1.6026 -2.0816 42 1 0.5902 1.9904 -1.4149 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042679770.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:34 Heat of formation + Delta-G solvation = 6.803256 kcal Electronic energy + Delta-G solvation = -18642.655211 eV Core-core repulsion = 16043.562058 eV Total energy + Delta-G solvation = -2599.093152 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.47794 -36.94792 -33.58742 -32.06441 -30.69444 -30.04733 -28.80141 -25.53829 -24.19872 -23.27826 -22.92667 -21.16960 -19.78366 -18.55164 -17.35321 -16.12218 -15.32015 -15.17233 -14.40604 -14.33857 -13.72417 -13.65483 -13.58809 -13.08983 -12.92709 -12.46210 -12.16032 -11.95859 -11.78400 -11.58998 -11.42761 -11.23227 -11.01749 -10.97310 -10.76324 -10.44464 -10.26939 -10.19273 -10.06152 -9.69264 -9.61007 -8.76784 -8.30515 -8.22255 -7.20107 -6.41400 -3.99622 3.38223 3.42370 3.60197 3.89470 4.50417 4.76630 4.84320 5.01513 5.11402 5.21749 5.32056 5.34540 5.36568 5.44243 5.57559 5.65041 5.71610 5.79577 5.82902 5.93117 5.97907 6.08971 6.12618 6.27504 6.30701 6.36272 6.41971 6.51550 6.62733 6.68025 6.77964 6.94047 7.00715 7.12468 7.14930 7.40565 7.83481 8.10694 8.38810 8.50922 9.03240 9.67718 10.99637 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.036640 B = 0.006337 C = 0.005890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.013164 B = 4417.118386 C = 4752.409361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 N -0.539 5.539 4 C 0.059 3.941 5 C -0.109 4.109 6 C 0.079 3.921 7 N -0.522 5.522 8 C 0.036 3.964 9 C 0.187 3.813 10 H -0.007 1.007 11 C -0.145 4.145 12 C -0.587 4.587 13 H 0.063 0.937 14 C 0.029 3.971 15 N -0.909 5.909 16 Si 1.043 2.957 17 H -0.286 1.286 18 H -0.275 1.275 19 H -0.286 1.286 20 C -0.152 4.152 21 C 0.060 3.940 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.029 0.971 26 H 0.071 0.929 27 H 0.030 0.970 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.016 0.984 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.051 0.949 36 H 0.019 0.981 37 H 0.055 0.945 38 H 0.267 0.733 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.029 0.971 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.878 -17.326 4.429 18.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.077 4.077 3 N -0.264 5.264 4 C -0.069 4.069 5 C -0.147 4.147 6 C -0.030 4.030 7 N -0.245 5.245 8 C -0.112 4.112 9 C 0.079 3.921 10 H 0.010 0.990 11 C -0.203 4.203 12 C -0.625 4.625 13 H 0.081 0.919 14 C -0.176 4.176 15 N -0.544 5.544 16 Si 0.872 3.128 17 H -0.212 1.212 18 H -0.201 1.201 19 H -0.212 1.212 20 C -0.191 4.191 21 C -0.068 4.068 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.047 0.953 26 H 0.089 0.911 27 H 0.048 0.952 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.034 0.966 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.038 0.962 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.047 0.953 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.191 -16.444 3.485 17.913 hybrid contribution 0.129 -1.047 0.560 1.195 sum -6.062 -17.492 4.044 18.949 Atomic orbital electron populations 1.21807 0.95065 1.01199 1.02595 1.22037 0.96030 0.89282 1.00371 1.61981 1.14152 1.14821 1.35478 1.22079 0.86995 0.97801 1.00037 1.21669 1.01016 0.93306 0.98678 1.21782 0.92624 0.91366 0.97274 1.62239 1.55734 0.99746 1.06755 1.22244 0.95370 1.00437 0.93167 1.19579 0.92818 0.94109 0.85562 0.98983 1.22249 1.01035 0.97331 0.99657 1.21998 1.44254 0.91738 1.04511 0.91852 1.25654 0.97338 0.94133 1.00472 1.70849 1.28265 1.24404 1.30900 0.84071 0.76366 0.75903 0.76425 1.21169 1.20143 1.21239 1.22303 0.99232 0.94988 1.02580 1.22074 1.00306 0.94942 0.89493 0.92629 0.92581 0.91871 0.95290 0.91055 0.95193 0.91082 0.91090 0.91030 0.90748 0.96600 0.93371 0.90779 0.93000 0.96248 0.92588 0.92267 0.90886 0.91372 0.95275 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.84 37.16 0.37 -1.02 16 2 C 0.05 0.53 5.68 -3.82 -0.02 0.50 16 3 N -0.54 -6.90 4.66 -234.67 -1.09 -7.99 16 4 C 0.06 0.75 5.46 -3.83 -0.02 0.73 16 5 C -0.11 -1.61 5.24 -26.65 -0.14 -1.75 16 6 C 0.08 1.38 2.04 -67.59 -0.14 1.24 16 7 N -0.52 -11.03 4.61 -228.15 -1.05 -12.08 16 8 C 0.04 0.72 8.44 60.06 0.51 1.23 16 9 C 0.19 4.47 1.36 -68.87 -0.09 4.38 16 10 H -0.01 -0.17 5.18 -51.92 -0.27 -0.44 16 11 C -0.14 -3.27 8.40 37.15 0.31 -2.96 16 12 C -0.59 -16.46 8.06 -34.44 -0.28 -16.74 16 13 H 0.06 1.93 6.88 -52.49 -0.36 1.57 16 14 C 0.03 0.83 5.30 -17.82 -0.09 0.74 16 15 N -0.91 -28.04 13.70 55.43 0.76 -27.28 16 16 Si 1.04 25.42 26.26 -169.99 -4.46 20.96 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.27 -6.20 5.73 56.52 0.32 -5.88 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 C -0.15 -2.49 4.68 -26.65 -0.12 -2.61 16 21 C 0.06 0.82 5.29 -3.84 -0.02 0.80 16 22 H 0.05 0.54 6.43 -51.93 -0.33 0.20 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.03 0.30 8.12 -51.93 -0.42 -0.13 16 26 H 0.07 0.67 7.99 -51.93 -0.41 0.26 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.79 8.01 -51.93 -0.42 0.37 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.07 1.10 6.23 -51.93 -0.32 0.77 16 31 H 0.07 1.34 6.20 -51.93 -0.32 1.02 16 32 H 0.02 0.31 6.45 -51.93 -0.34 -0.02 16 33 H 0.05 0.84 6.08 -51.93 -0.32 0.53 16 34 H 0.07 1.65 6.34 -51.93 -0.33 1.32 16 35 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.02 0.37 6.69 -51.93 -0.35 0.03 16 37 H 0.06 1.31 4.81 -51.93 -0.25 1.06 16 38 H 0.27 8.23 8.73 -40.82 -0.36 7.88 16 39 H 0.07 1.25 6.35 -51.93 -0.33 0.92 16 40 H 0.07 1.21 6.66 -51.92 -0.35 0.87 16 41 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.91 6.21 -51.92 -0.32 0.59 16 LS Contribution 301.20 15.07 4.54 4.54 Total: -1.00 -29.53 301.20 -8.26 -37.79 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -7.20 Total: -0.48 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: 0.25 Total: -15.46 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -1.39 Total: -47.35 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -4.46 Total: 20.96 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.53 -8.26 -37.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042679770.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.598 kcal (2) G-P(sol) polarization free energy of solvation -29.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds