Wall clock time and date at job start Mon Mar 30 2020 03:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46903 * 109.46772 * 2 1 4 4 C 1.46850 * 110.99555 * 170.00096 * 3 2 1 5 5 C 1.53036 * 109.51774 * 185.83738 * 4 3 2 6 6 C 1.53118 * 109.27851 * 300.81531 * 5 4 3 7 7 N 1.46901 * 109.52050 * 177.55963 * 6 5 4 8 8 C 1.46900 * 111.00402 * 298.95627 * 7 6 5 9 9 C 1.46905 * 111.00050 * 174.99760 * 7 6 5 10 10 H 1.09009 * 109.46628 * 60.00723 * 9 7 6 11 11 C 1.52992 * 109.47234 * 300.00906 * 9 7 6 12 12 C 1.50697 * 109.47135 * 180.02562 * 9 7 6 13 13 H 1.07996 * 120.00003 * 5.62360 * 12 9 7 14 14 C 1.37882 * 119.99881 * 185.61719 * 12 9 7 15 15 N 1.31507 * 120.00303 * 196.38913 * 14 12 9 16 16 Si 1.86799 * 119.99805 * 16.65903 * 14 12 9 17 17 H 1.48503 * 109.47293 * 179.72543 * 16 14 12 18 18 H 1.48508 * 109.47275 * 299.72627 * 16 14 12 19 19 H 1.48499 * 109.47381 * 59.72851 * 16 14 12 20 20 C 1.53120 * 109.15690 * 57.66086 * 6 5 4 21 21 C 1.46844 * 110.99667 * 294.20379 * 3 2 1 22 22 H 1.09001 * 109.47366 * 60.00502 * 1 2 3 23 23 H 1.09002 * 109.46972 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47304 * 300.00081 * 1 2 3 25 25 H 1.08995 * 109.47524 * 239.99483 * 2 1 3 26 26 H 1.09000 * 109.46651 * 119.99710 * 2 1 3 27 27 H 1.09001 * 109.46418 * 65.81919 * 4 3 2 28 28 H 1.08999 * 109.45024 * 305.84382 * 4 3 2 29 29 H 1.09005 * 109.49860 * 180.87596 * 5 4 3 30 30 H 1.08996 * 109.50810 * 60.76317 * 5 4 3 31 31 H 1.08996 * 109.52548 * 297.68810 * 6 5 4 32 32 H 1.08995 * 109.47090 * 296.04726 * 8 7 6 33 33 H 1.08999 * 109.46714 * 56.04921 * 8 7 6 34 34 H 1.09001 * 109.47106 * 176.04760 * 8 7 6 35 35 H 1.09002 * 109.47117 * 307.10980 * 11 9 7 36 36 H 1.09003 * 109.47622 * 67.11114 * 11 9 7 37 37 H 1.09000 * 109.47371 * 187.11365 * 11 9 7 38 38 H 0.97006 * 119.99645 * 355.27842 * 15 14 12 39 39 H 1.09002 * 109.50329 * 62.28743 * 20 6 5 40 40 H 1.09009 * 109.50096 * 182.40183 * 20 6 5 41 41 H 1.08996 * 109.46637 * 294.17830 * 21 3 2 42 42 H 1.09009 * 109.46326 * 54.15182 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4679 1.4311 0.2380 5 6 3.9173 2.8875 0.3761 6 6 3.5675 3.6482 -0.9058 7 7 3.9436 5.0604 -0.7568 8 6 3.2108 5.6863 0.3519 9 6 3.7318 5.7968 -2.0102 10 1 2.6795 5.7430 -2.2896 11 6 4.5858 5.1757 -3.1172 12 6 4.1282 7.2381 -1.8192 13 1 4.5848 7.5543 -0.8930 14 6 3.9083 8.1529 -2.8270 15 7 4.5265 9.3135 -2.8081 16 14 2.7262 7.7469 -4.2153 17 1 2.6614 8.8903 -5.1607 18 1 3.2027 6.5374 -4.9333 19 1 1.3749 7.4902 -3.6558 20 6 2.0606 3.5438 -1.1567 21 6 1.6650 2.0684 -1.2504 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8900 27 1 3.9887 0.9682 -0.6002 28 1 3.7025 0.8902 1.1548 29 1 4.9948 2.9221 0.5373 30 1 3.4073 3.3471 1.2227 31 1 4.1086 3.2139 -1.7464 32 1 2.1446 5.6914 0.1256 33 1 3.3852 5.1213 1.2675 34 1 3.5589 6.7106 0.4851 35 1 5.6222 5.1143 -2.7853 36 1 4.2167 4.1752 -3.3429 37 1 4.5271 5.7951 -4.0122 38 1 5.0838 9.5538 -2.0514 39 1 1.5213 4.0138 -0.3343 40 1 1.8115 4.0474 -2.0909 41 1 2.1943 1.6026 -2.0816 42 1 0.5902 1.9904 -1.4149 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042679770.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:34 Heat of formation + Delta-G solvation = -14.186891 kcal Electronic energy + Delta-G solvation = -18643.565412 eV Core-core repulsion = 16043.562058 eV Total energy + Delta-G solvation = -2600.003353 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.75396 -38.32830 -35.29621 -33.66163 -31.86284 -31.71045 -29.99753 -27.23458 -26.04154 -24.43417 -24.20905 -22.24847 -21.30164 -20.12189 -19.40528 -17.24020 -16.94799 -16.21939 -15.93539 -15.46654 -15.28053 -15.19688 -14.90328 -14.39191 -14.25087 -14.02451 -13.76120 -13.40642 -13.21696 -12.80067 -12.62957 -12.60288 -12.48178 -12.37176 -12.11900 -11.95735 -11.86170 -11.73579 -11.47608 -11.34799 -11.11415 -10.87756 -10.40594 -9.25413 -8.88249 -8.72256 -6.30942 1.42558 1.49552 1.68603 2.47493 2.95168 3.08493 3.26211 3.85268 3.90154 4.08320 4.19001 4.30486 4.35926 4.41529 4.49334 4.53791 4.61143 4.65113 4.66887 4.72322 4.76907 4.81550 4.86789 4.90963 4.96645 5.00593 5.06174 5.12338 5.15388 5.21012 5.30114 5.37385 5.45016 5.56524 5.89000 6.07331 6.15241 6.20163 6.29721 6.65393 6.77959 7.46046 8.67618 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.036640 B = 0.006337 C = 0.005890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.013164 B = 4417.118386 C = 4752.409361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.050 3.950 3 N -0.550 5.550 4 C 0.064 3.936 5 C -0.102 4.102 6 C 0.079 3.921 7 N -0.537 5.537 8 C 0.045 3.955 9 C 0.189 3.811 10 H -0.007 1.007 11 C -0.138 4.138 12 C -0.585 4.585 13 H 0.023 0.977 14 C -0.022 4.022 15 N -0.942 5.942 16 Si 1.080 2.920 17 H -0.289 1.289 18 H -0.242 1.242 19 H -0.270 1.270 20 C -0.146 4.146 21 C 0.067 3.933 22 H 0.050 0.950 23 H 0.074 0.926 24 H 0.055 0.945 25 H 0.034 0.966 26 H 0.083 0.917 27 H 0.034 0.966 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.016 0.984 33 H 0.075 0.925 34 H 0.040 0.960 35 H 0.042 0.958 36 H 0.051 0.949 37 H 0.047 0.953 38 H 0.251 0.749 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.032 0.968 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.096 -20.534 4.060 22.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.077 4.077 3 N -0.275 5.275 4 C -0.064 4.064 5 C -0.140 4.140 6 C -0.030 4.030 7 N -0.260 5.260 8 C -0.104 4.104 9 C 0.081 3.919 10 H 0.010 0.990 11 C -0.196 4.196 12 C -0.623 4.623 13 H 0.042 0.958 14 C -0.219 4.219 15 N -0.579 5.579 16 Si 0.902 3.098 17 H -0.215 1.215 18 H -0.166 1.166 19 H -0.195 1.195 20 C -0.186 4.186 21 C -0.061 4.061 22 H 0.069 0.931 23 H 0.092 0.908 24 H 0.074 0.926 25 H 0.052 0.948 26 H 0.102 0.898 27 H 0.052 0.948 28 H 0.109 0.891 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.034 0.966 33 H 0.093 0.907 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.051 0.949 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.403 -19.691 3.143 21.270 hybrid contribution 0.545 -0.070 0.805 0.974 sum -6.859 -19.760 3.948 21.286 Atomic orbital electron populations 1.21789 0.94365 1.02252 1.01974 1.22122 0.96582 0.87801 1.01208 1.61977 1.14201 1.16465 1.34891 1.22039 0.87044 0.96053 1.01252 1.21606 1.01023 0.94607 0.96812 1.21868 0.93449 0.88920 0.98739 1.62152 1.56598 1.01641 1.05612 1.22132 0.95041 0.98996 0.94192 1.19414 0.92858 0.92073 0.87530 0.98958 1.22118 1.00257 0.98802 0.98448 1.22189 1.42900 0.94496 1.02730 0.95829 1.27052 0.98081 0.93502 1.03313 1.70982 1.30024 1.26015 1.30854 0.83635 0.75119 0.76960 0.74133 1.21508 1.16635 1.19523 1.22201 0.98071 0.97015 1.01300 1.21963 1.01031 0.92951 0.90161 0.93119 0.90760 0.92571 0.94788 0.89811 0.94764 0.89077 0.91124 0.91598 0.90973 0.96569 0.90681 0.94135 0.93896 0.93014 0.93452 0.94036 0.91918 0.92859 0.94932 0.89892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.84 71.98 0.71 -1.54 16 2 C 0.05 0.86 5.68 86.30 0.49 1.35 16 3 N -0.55 -12.27 4.66 -896.36 -4.17 -16.44 16 4 C 0.06 1.41 5.46 86.32 0.47 1.88 16 5 C -0.10 -2.79 5.24 30.65 0.16 -2.63 16 6 C 0.08 2.60 2.04 44.99 0.09 2.69 16 7 N -0.54 -22.43 4.61 -875.73 -4.04 -26.46 16 8 C 0.04 1.80 8.44 127.69 1.08 2.88 16 9 C 0.19 8.98 1.36 44.16 0.06 9.04 16 10 H -0.01 -0.33 5.18 -2.38 -0.01 -0.34 16 11 C -0.14 -6.02 8.40 71.98 0.60 -5.42 16 12 C -0.58 -33.69 8.06 25.60 0.21 -33.48 16 13 H 0.02 1.51 6.88 -2.91 -0.02 1.49 16 14 C -0.02 -1.28 5.30 84.66 0.45 -0.83 16 15 N -0.94 -60.02 13.70 21.45 0.29 -59.72 16 16 Si 1.08 50.61 26.26 68.60 1.80 52.41 16 17 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 18 H -0.24 -10.03 5.73 99.48 0.57 -9.46 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 20 C -0.15 -4.51 4.68 30.65 0.14 -4.36 16 21 C 0.07 1.64 5.29 86.33 0.46 2.10 16 22 H 0.05 0.82 6.43 -2.39 -0.02 0.81 16 23 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.03 0.56 8.12 -2.39 -0.02 0.54 16 26 H 0.08 1.24 7.99 -2.39 -0.02 1.22 16 27 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.09 1.66 8.01 -2.39 -0.02 1.65 16 29 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 30 H 0.07 1.87 6.23 -2.39 -0.01 1.86 16 31 H 0.07 2.42 6.20 -2.39 -0.01 2.40 16 32 H 0.02 0.64 6.45 -2.39 -0.02 0.62 16 33 H 0.07 2.58 6.08 -2.39 -0.01 2.56 16 34 H 0.04 1.88 6.34 -2.39 -0.02 1.86 16 35 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.05 1.89 6.69 -2.39 -0.02 1.88 16 37 H 0.05 2.12 4.81 -2.39 -0.01 2.11 16 38 H 0.25 16.27 8.73 -92.70 -0.81 15.46 16 39 H 0.06 2.05 6.35 -2.39 -0.02 2.03 16 40 H 0.05 1.79 6.66 -2.38 -0.02 1.77 16 41 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.08 1.85 6.21 -2.38 -0.01 1.84 16 Total: -1.00 -64.94 301.20 -0.39 -65.34 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 0.81 Total: 13.21 kcal Atomic # 6 Polarization: -33.26 SS G_CDS: 4.92 Total: -28.34 kcal Atomic # 7 Polarization: -94.71 SS G_CDS: -7.92 Total: -102.63 kcal Atomic # 14 Polarization: 50.61 SS G_CDS: 1.80 Total: 52.41 kcal Total: -64.94 -0.39 -65.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042679770.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.151 kcal (2) G-P(sol) polarization free energy of solvation -64.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds