Wall clock time and date at job start Mon Mar 30 2020 03:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46903 * 109.47124 * 2 1 4 4 C 1.46844 * 111.00167 * 169.99939 * 3 2 1 5 5 C 1.53033 * 109.52509 * 185.83960 * 4 3 2 6 6 C 1.53117 * 109.27992 * 300.82258 * 5 4 3 7 7 C 1.52994 * 109.52218 * 177.55972 * 6 5 4 8 8 N 1.46906 * 109.46817 * 175.12743 * 7 6 5 9 9 C 1.46903 * 110.99973 * 179.97438 * 8 7 6 10 10 H 1.09003 * 109.46808 * 325.00209 * 9 8 7 11 11 C 1.53000 * 109.47120 * 84.99803 * 9 8 7 12 12 C 1.50694 * 109.47066 * 204.99831 * 9 8 7 13 13 H 1.08000 * 120.00563 * 359.97438 * 12 9 8 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 9 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.53116 * 109.21406 * 57.61866 * 6 5 4 21 21 C 1.46838 * 110.99880 * 294.21012 * 3 2 1 22 22 H 1.09000 * 109.46784 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47008 * 299.99609 * 1 2 3 24 24 H 1.08993 * 109.47187 * 60.00055 * 1 2 3 25 25 H 1.09000 * 109.47448 * 240.00158 * 2 1 3 26 26 H 1.09001 * 109.47402 * 119.99766 * 2 1 3 27 27 H 1.09002 * 109.46698 * 65.82298 * 4 3 2 28 28 H 1.09000 * 109.46364 * 305.85889 * 4 3 2 29 29 H 1.08999 * 109.50348 * 180.87521 * 5 4 3 30 30 H 1.09008 * 109.50392 * 60.76480 * 5 4 3 31 31 H 1.09007 * 109.51904 * 297.68462 * 6 5 4 32 32 H 1.08993 * 109.47410 * 55.12818 * 7 6 5 33 33 H 1.08998 * 109.47442 * 295.12092 * 7 6 5 34 34 H 1.00894 * 111.00400 * 56.04110 * 8 7 6 35 35 H 1.08997 * 109.47359 * 180.02562 * 11 9 8 36 36 H 1.09007 * 109.47356 * 300.00024 * 11 9 8 37 37 H 1.09000 * 109.47156 * 59.99749 * 11 9 8 38 38 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 39 39 H 1.09004 * 109.50251 * 62.32036 * 20 6 5 40 40 H 1.08995 * 109.50386 * 182.43917 * 20 6 5 41 41 H 1.08997 * 109.46487 * 294.17349 * 21 3 2 42 42 H 1.09001 * 109.46843 * 54.15694 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4680 1.4312 0.2381 5 6 3.9174 2.8875 0.3762 6 6 3.5675 3.6483 -0.9057 7 6 3.9594 5.1190 -0.7504 8 7 3.7316 5.8231 -2.0195 9 6 4.0972 7.2415 -1.9076 10 1 3.8581 7.6004 -0.9065 11 6 5.5971 7.4033 -2.1627 12 6 3.3254 8.0409 -2.9256 13 1 2.6329 7.5449 -3.5896 14 6 3.5041 9.4055 -3.0100 15 7 4.3477 10.0094 -2.2018 16 14 2.5480 10.3962 -4.2724 17 1 2.9174 11.8302 -4.1593 18 1 2.8738 9.9067 -5.6359 19 1 1.0921 10.2397 -4.0250 20 6 2.0609 3.5440 -1.1582 21 6 1.6651 2.0685 -1.2503 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.9888 0.9683 -0.6002 28 1 3.7028 0.8901 1.1547 29 1 4.9949 2.9221 0.5374 30 1 3.4074 3.3470 1.2229 31 1 4.1087 3.2139 -1.7463 32 1 5.0132 5.1878 -0.4808 33 1 3.3536 5.5758 0.0322 34 1 2.7753 5.7194 -2.3240 35 1 5.8684 8.4556 -2.0793 36 1 6.1553 6.8250 -1.4264 37 1 5.8362 7.0442 -3.1637 38 1 4.4737 10.9694 -2.2615 39 1 1.5208 4.0142 -0.3364 40 1 1.8129 4.0474 -2.0927 41 1 2.1943 1.6027 -2.0816 42 1 0.5903 1.9907 -1.4147 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044518613.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:20 Heat of formation + Delta-G solvation = -16.587584 kcal Electronic energy + Delta-G solvation = -17758.579269 eV Core-core repulsion = 15158.471814 eV Total energy + Delta-G solvation = -2600.107455 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.22512 -36.29668 -34.29543 -32.23665 -30.82781 -30.18327 -28.09940 -25.52783 -24.81746 -23.34614 -22.07768 -20.93067 -19.64305 -19.43374 -16.56939 -16.02411 -15.31019 -14.90418 -14.61915 -14.33073 -13.88744 -13.85761 -13.60144 -12.97118 -12.82800 -12.56268 -12.08404 -11.93149 -11.80870 -11.53598 -11.20016 -11.08595 -11.05314 -10.91280 -10.76562 -10.50228 -10.27037 -10.12472 -10.09766 -9.93371 -9.63983 -8.77771 -8.43927 -8.34822 -7.18997 -5.99548 -4.05956 3.32803 3.37052 3.39868 3.84643 4.42339 4.78548 4.91451 4.93870 5.07618 5.11988 5.31230 5.32978 5.34683 5.47322 5.49885 5.58526 5.67250 5.76207 5.77933 5.88429 5.91550 5.98680 6.07051 6.16563 6.29726 6.36551 6.39943 6.58396 6.75566 6.93764 7.08404 7.09888 7.18736 7.28822 7.56383 7.81212 7.94845 8.31900 8.45394 8.73819 9.05416 9.59832 11.06800 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.039180 B = 0.004501 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.472477 B = 6219.671997 C = 6762.217468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 N -0.539 5.539 4 C 0.059 3.941 5 C -0.111 4.111 6 C -0.085 4.085 7 C 0.067 3.933 8 N -0.690 5.690 9 C 0.211 3.789 10 H 0.000 1.000 11 C -0.123 4.123 12 C -0.518 4.518 13 H 0.058 0.942 14 C 0.062 3.938 15 N -0.891 5.891 16 Si 0.897 3.103 17 H -0.287 1.287 18 H -0.277 1.277 19 H -0.278 1.278 20 C -0.112 4.112 21 C 0.056 3.944 22 H 0.055 0.945 23 H 0.062 0.938 24 H 0.055 0.945 25 H 0.029 0.971 26 H 0.071 0.929 27 H 0.030 0.970 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.018 0.982 34 H 0.329 0.671 35 H 0.079 0.921 36 H 0.003 0.997 37 H 0.030 0.970 38 H 0.261 0.739 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.031 0.969 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.119 -17.304 4.744 18.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 N -0.265 5.265 4 C -0.069 4.069 5 C -0.149 4.149 6 C -0.104 4.104 7 C -0.063 4.063 8 N -0.321 5.321 9 C 0.103 3.897 10 H 0.017 0.983 11 C -0.182 4.182 12 C -0.557 4.557 13 H 0.076 0.924 14 C -0.140 4.140 15 N -0.529 5.529 16 Si 0.724 3.276 17 H -0.213 1.213 18 H -0.202 1.202 19 H -0.203 1.203 20 C -0.150 4.150 21 C -0.072 4.072 22 H 0.074 0.926 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.047 0.953 26 H 0.089 0.911 27 H 0.049 0.951 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.036 0.964 34 H 0.146 0.854 35 H 0.098 0.902 36 H 0.022 0.978 37 H 0.049 0.951 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.049 0.951 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.660 -17.039 4.901 18.103 hybrid contribution -0.753 0.513 -0.789 1.205 sum -4.413 -16.526 4.113 17.592 Atomic orbital electron populations 1.21809 0.94995 1.01254 1.02639 1.22043 0.96088 0.89245 1.00378 1.61971 1.14007 1.14903 1.35602 1.22062 0.87187 0.97630 1.00033 1.21609 1.00477 0.94109 0.98711 1.21220 0.95726 0.96179 0.97301 1.21899 1.00018 0.92094 0.92281 1.60763 1.28106 1.15846 1.27403 1.19088 0.93343 0.81769 0.95490 0.98275 1.21706 0.97030 1.01913 0.97538 1.21242 1.23735 0.92123 1.18575 0.92354 1.24924 0.95356 0.97757 0.95975 1.69894 1.35453 1.09781 1.37821 0.86590 0.80209 0.78868 0.81891 1.21310 1.20214 1.20338 1.21645 0.96235 0.94720 1.02408 1.22141 1.00456 0.95117 0.89487 0.92567 0.91847 0.92557 0.95259 0.91091 0.95138 0.91205 0.91591 0.91267 0.91049 0.92067 0.96392 0.85357 0.90193 0.97789 0.95062 0.92911 0.91484 0.90883 0.95120 0.90811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.84 37.16 0.37 -0.93 16 2 C 0.05 0.49 5.68 -3.82 -0.02 0.46 16 3 N -0.54 -6.33 4.66 -234.67 -1.09 -7.42 16 4 C 0.06 0.67 5.46 -3.84 -0.02 0.65 16 5 C -0.11 -1.41 5.38 -26.65 -0.14 -1.55 16 6 C -0.09 -1.27 2.46 -90.50 -0.22 -1.49 16 7 C 0.07 1.24 4.95 -3.82 -0.02 1.22 16 8 N -0.69 -15.01 6.30 -107.95 -0.68 -15.69 16 9 C 0.21 5.48 2.60 -68.87 -0.18 5.30 16 10 H 0.00 -0.01 7.80 -51.93 -0.40 -0.42 16 11 C -0.12 -3.16 9.19 37.16 0.34 -2.82 16 12 C -0.52 -14.47 8.59 -34.44 -0.30 -14.76 16 13 H 0.06 1.60 7.62 -52.49 -0.40 1.20 16 14 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 15 N -0.89 -25.84 11.32 55.43 0.63 -25.22 16 16 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 20 C -0.11 -1.57 5.10 -26.65 -0.14 -1.71 16 21 C 0.06 0.68 5.29 -3.83 -0.02 0.66 16 22 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 25 H 0.03 0.28 8.12 -51.93 -0.42 -0.14 16 26 H 0.07 0.62 7.99 -51.93 -0.41 0.21 16 27 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.71 8.02 -51.93 -0.42 0.29 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 31 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 32 H 0.06 1.16 7.44 -51.93 -0.39 0.77 16 33 H 0.02 0.35 8.05 -51.93 -0.42 -0.07 16 34 H 0.33 6.96 6.54 -39.30 -0.26 6.70 16 35 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 36 H 0.00 0.07 7.45 -51.93 -0.39 -0.31 16 37 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 1.07 6.80 -51.93 -0.35 0.72 16 41 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.84 6.21 -51.93 -0.32 0.51 16 LS Contribution 319.11 15.07 4.81 4.81 Total: -1.00 -28.67 319.11 -9.57 -38.24 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -7.77 Total: 2.16 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -0.45 Total: -13.34 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: -1.15 Total: -48.33 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.67 -9.57 -38.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044518613.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.652 kcal (2) G-P(sol) polarization free energy of solvation -28.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds