Wall clock time and date at job start Mon Mar 30 2020 03:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46903 * 109.47124 * 2 1 4 4 C 1.46844 * 111.00167 * 169.99939 * 3 2 1 5 5 C 1.53033 * 109.52509 * 185.83960 * 4 3 2 6 6 C 1.53117 * 109.27992 * 300.82258 * 5 4 3 7 7 C 1.52994 * 109.52218 * 177.55972 * 6 5 4 8 8 N 1.46906 * 109.46817 * 175.12743 * 7 6 5 9 9 C 1.46903 * 110.99973 * 179.97438 * 8 7 6 10 10 H 1.09003 * 109.46808 * 325.00209 * 9 8 7 11 11 C 1.53000 * 109.47120 * 84.99803 * 9 8 7 12 12 C 1.50694 * 109.47066 * 204.99831 * 9 8 7 13 13 H 1.08000 * 120.00563 * 359.97438 * 12 9 8 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 9 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.53116 * 109.21406 * 57.61866 * 6 5 4 21 21 C 1.46838 * 110.99880 * 294.21012 * 3 2 1 22 22 H 1.09000 * 109.46784 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47008 * 299.99609 * 1 2 3 24 24 H 1.08993 * 109.47187 * 60.00055 * 1 2 3 25 25 H 1.09000 * 109.47448 * 240.00158 * 2 1 3 26 26 H 1.09001 * 109.47402 * 119.99766 * 2 1 3 27 27 H 1.09002 * 109.46698 * 65.82298 * 4 3 2 28 28 H 1.09000 * 109.46364 * 305.85889 * 4 3 2 29 29 H 1.08999 * 109.50348 * 180.87521 * 5 4 3 30 30 H 1.09008 * 109.50392 * 60.76480 * 5 4 3 31 31 H 1.09007 * 109.51904 * 297.68462 * 6 5 4 32 32 H 1.08993 * 109.47410 * 55.12818 * 7 6 5 33 33 H 1.08998 * 109.47442 * 295.12092 * 7 6 5 34 34 H 1.00894 * 111.00400 * 56.04110 * 8 7 6 35 35 H 1.08997 * 109.47359 * 180.02562 * 11 9 8 36 36 H 1.09007 * 109.47356 * 300.00024 * 11 9 8 37 37 H 1.09000 * 109.47156 * 59.99749 * 11 9 8 38 38 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 39 39 H 1.09004 * 109.50251 * 62.32036 * 20 6 5 40 40 H 1.08995 * 109.50386 * 182.43917 * 20 6 5 41 41 H 1.08997 * 109.46487 * 294.17349 * 21 3 2 42 42 H 1.09001 * 109.46843 * 54.15694 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4680 1.4312 0.2381 5 6 3.9174 2.8875 0.3762 6 6 3.5675 3.6483 -0.9057 7 6 3.9594 5.1190 -0.7504 8 7 3.7316 5.8231 -2.0195 9 6 4.0972 7.2415 -1.9076 10 1 3.8581 7.6004 -0.9065 11 6 5.5971 7.4033 -2.1627 12 6 3.3254 8.0409 -2.9256 13 1 2.6329 7.5449 -3.5896 14 6 3.5041 9.4055 -3.0100 15 7 4.3477 10.0094 -2.2018 16 14 2.5480 10.3962 -4.2724 17 1 2.9174 11.8302 -4.1593 18 1 2.8738 9.9067 -5.6359 19 1 1.0921 10.2397 -4.0250 20 6 2.0609 3.5440 -1.1582 21 6 1.6651 2.0685 -1.2503 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.9888 0.9683 -0.6002 28 1 3.7028 0.8901 1.1547 29 1 4.9949 2.9221 0.5374 30 1 3.4074 3.3470 1.2229 31 1 4.1087 3.2139 -1.7463 32 1 5.0132 5.1878 -0.4808 33 1 3.3536 5.5758 0.0322 34 1 2.7753 5.7194 -2.3240 35 1 5.8684 8.4556 -2.0793 36 1 6.1553 6.8250 -1.4264 37 1 5.8362 7.0442 -3.1637 38 1 4.4737 10.9694 -2.2615 39 1 1.5208 4.0142 -0.3364 40 1 1.8129 4.0474 -2.0927 41 1 2.1943 1.6027 -2.0816 42 1 0.5903 1.9907 -1.4147 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044518613.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:20 Heat of formation + Delta-G solvation = -34.912669 kcal Electronic energy + Delta-G solvation = -17759.373905 eV Core-core repulsion = 15158.471814 eV Total energy + Delta-G solvation = -2600.902091 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.27090 -37.88973 -35.77209 -33.99328 -31.93294 -31.35634 -29.69786 -27.44046 -26.37753 -24.38347 -23.22120 -21.98061 -21.57817 -20.56914 -18.55561 -17.10944 -16.83187 -16.28730 -15.99583 -15.56891 -15.33554 -14.99297 -14.91567 -14.40820 -14.10277 -13.99767 -13.44044 -13.26859 -13.02267 -12.82603 -12.72926 -12.54205 -12.40182 -12.33006 -12.19410 -12.10140 -11.97771 -11.85457 -11.49575 -11.21064 -10.99961 -10.82825 -10.56902 -9.23237 -9.04399 -8.13426 -6.28199 1.42381 1.44587 1.52246 2.41569 2.98359 3.14824 3.58458 3.84382 3.88599 4.05075 4.19704 4.33106 4.38475 4.46053 4.53237 4.63855 4.65276 4.68603 4.74972 4.83695 4.89213 4.92235 4.99730 5.03533 5.07646 5.10424 5.15922 5.20926 5.23751 5.32866 5.39897 5.45338 5.55648 5.67604 5.86089 6.18369 6.21542 6.23598 6.48227 6.78592 7.01116 7.42402 8.92273 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.039180 B = 0.004501 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.472477 B = 6219.671997 C = 6762.217468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.049 3.951 3 N -0.551 5.551 4 C 0.062 3.938 5 C -0.106 4.106 6 C -0.075 4.075 7 C 0.070 3.930 8 N -0.686 5.686 9 C 0.214 3.786 10 H -0.034 1.034 11 C -0.112 4.112 12 C -0.540 4.540 13 H 0.059 0.941 14 C 0.012 3.988 15 N -0.919 5.919 16 Si 0.964 3.036 17 H -0.283 1.283 18 H -0.270 1.270 19 H -0.270 1.270 20 C -0.109 4.109 21 C 0.062 3.938 22 H 0.073 0.927 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.032 0.968 26 H 0.082 0.918 27 H 0.032 0.968 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.007 0.993 34 H 0.332 0.668 35 H 0.057 0.943 36 H 0.020 0.980 37 H 0.027 0.973 38 H 0.263 0.737 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.030 0.970 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.809 -18.753 4.418 19.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.078 4.078 3 N -0.277 5.277 4 C -0.066 4.066 5 C -0.145 4.145 6 C -0.094 4.094 7 C -0.060 4.060 8 N -0.317 5.317 9 C 0.105 3.895 10 H -0.017 1.017 11 C -0.171 4.171 12 C -0.578 4.578 13 H 0.078 0.922 14 C -0.187 4.187 15 N -0.558 5.558 16 Si 0.789 3.211 17 H -0.209 1.209 18 H -0.196 1.196 19 H -0.195 1.195 20 C -0.147 4.147 21 C -0.066 4.066 22 H 0.091 0.909 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.100 0.900 27 H 0.051 0.949 28 H 0.106 0.894 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.026 0.974 34 H 0.150 0.850 35 H 0.075 0.925 36 H 0.039 0.961 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.049 0.951 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.356 -18.515 4.581 19.564 hybrid contribution -0.523 0.938 -0.636 1.248 sum -4.878 -17.577 3.945 18.663 Atomic orbital electron populations 1.21790 0.94343 1.02234 1.02042 1.22124 0.96623 0.87998 1.01068 1.61981 1.14221 1.16326 1.35131 1.22048 0.87098 0.96448 1.01009 1.21567 1.01038 0.94889 0.96968 1.21112 0.96251 0.93590 0.98462 1.21946 0.99517 0.94084 0.90407 1.60696 1.28316 1.13476 1.29223 1.18919 0.93454 0.83853 0.93277 1.01675 1.21534 0.97088 1.00651 0.97792 1.21573 1.24237 0.92917 1.19097 0.92243 1.25767 0.96217 0.98825 0.97864 1.70027 1.36547 1.10079 1.39167 0.85519 0.78988 0.77231 0.79338 1.20873 1.19552 1.19497 1.21583 0.95430 0.96263 1.01446 1.22039 1.01021 0.93594 0.89918 0.90851 0.92528 0.93016 0.94930 0.89964 0.94928 0.89435 0.90754 0.91903 0.91473 0.92617 0.97433 0.85016 0.92460 0.96087 0.95341 0.92806 0.92467 0.91848 0.95128 0.89894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.84 71.98 0.71 -1.50 16 2 C 0.05 0.83 5.68 86.30 0.49 1.32 16 3 N -0.55 -11.80 4.66 -896.37 -4.18 -15.98 16 4 C 0.06 1.27 5.46 86.32 0.47 1.74 16 5 C -0.11 -2.56 5.38 30.64 0.16 -2.39 16 6 C -0.08 -2.18 2.46 -10.72 -0.03 -2.21 16 7 C 0.07 2.60 4.95 86.30 0.43 3.03 16 8 N -0.69 -30.11 6.30 -495.46 -3.12 -33.23 16 9 C 0.21 11.32 2.60 44.17 0.11 11.43 16 10 H -0.03 -2.01 7.80 -2.39 -0.02 -2.03 16 11 C -0.11 -5.82 9.19 71.98 0.66 -5.15 16 12 C -0.54 -30.40 8.59 25.60 0.22 -30.18 16 13 H 0.06 3.25 7.62 -2.91 -0.02 3.23 16 14 C 0.01 0.70 5.30 84.66 0.45 1.15 16 15 N -0.92 -53.98 11.32 21.45 0.24 -53.74 16 16 Si 0.96 43.94 29.54 68.60 2.03 45.96 16 17 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 20 C -0.11 -3.00 5.10 30.65 0.16 -2.85 16 21 C 0.06 1.42 5.29 86.33 0.46 1.88 16 22 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 23 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.05 0.82 6.43 -2.39 -0.02 0.80 16 25 H 0.03 0.54 8.12 -2.39 -0.02 0.52 16 26 H 0.08 1.20 7.99 -2.39 -0.02 1.19 16 27 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.09 1.51 8.02 -2.39 -0.02 1.49 16 29 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 31 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 32 H 0.06 2.11 7.44 -2.39 -0.02 2.09 16 33 H 0.01 0.29 8.05 -2.39 -0.02 0.27 16 34 H 0.33 14.18 6.54 -89.70 -0.59 13.59 16 35 H 0.06 3.22 6.07 -2.39 -0.01 3.21 16 36 H 0.02 0.96 7.45 -2.38 -0.02 0.94 16 37 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 39 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 40 H 0.06 1.84 6.80 -2.39 -0.02 1.83 16 41 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.08 1.75 6.21 -2.39 -0.01 1.73 16 Total: -1.00 -60.64 319.11 -0.36 -61.00 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.37 Total: 19.73 kcal Atomic # 6 Polarization: -28.04 SS G_CDS: 4.29 Total: -23.75 kcal Atomic # 7 Polarization: -95.89 SS G_CDS: -7.05 Total: -102.95 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -60.64 -0.36 -61.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044518613.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.091 kcal (2) G-P(sol) polarization free energy of solvation -60.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds