Wall clock time and date at job start Mon Mar 30 2020 03:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47133 * 2 1 4 4 C 1.46846 * 111.00261 * 170.00087 * 3 2 1 5 5 C 1.53042 * 109.52596 * 185.83987 * 4 3 2 6 6 C 1.53120 * 109.27362 * 300.81950 * 5 4 3 7 7 C 1.52996 * 109.51967 * 177.55932 * 6 5 4 8 8 N 1.46902 * 109.47211 * 175.00201 * 7 6 5 9 9 C 1.46899 * 111.00131 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.47652 * 34.99504 * 9 8 7 11 11 C 1.53009 * 109.46986 * 274.99873 * 9 8 7 12 12 C 1.50702 * 109.47505 * 154.99972 * 9 8 7 13 13 H 1.08002 * 119.99446 * 359.97438 * 12 9 8 14 14 C 1.37871 * 120.00072 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99826 * 179.72119 * 14 12 9 16 16 Si 1.86800 * 120.00406 * 359.97438 * 14 12 9 17 17 H 1.48501 * 109.46758 * 269.72576 * 16 14 12 18 18 H 1.48499 * 109.47026 * 29.72423 * 16 14 12 19 19 H 1.48496 * 109.47474 * 149.72459 * 16 14 12 20 20 C 1.53116 * 109.16326 * 57.65672 * 6 5 4 21 21 C 1.46853 * 110.99914 * 294.20830 * 3 2 1 22 22 H 1.09001 * 109.46895 * 299.99711 * 1 2 3 23 23 H 1.08995 * 109.46853 * 60.00283 * 1 2 3 24 24 H 1.09004 * 109.46862 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47246 * 239.99597 * 2 1 3 26 26 H 1.09000 * 109.47283 * 119.99798 * 2 1 3 27 27 H 1.08999 * 109.46565 * 65.81794 * 4 3 2 28 28 H 1.09000 * 109.46003 * 305.85471 * 4 3 2 29 29 H 1.08995 * 109.50135 * 180.88167 * 5 4 3 30 30 H 1.08997 * 109.50292 * 60.75654 * 5 4 3 31 31 H 1.08999 * 109.52161 * 297.68280 * 6 5 4 32 32 H 1.08997 * 109.47556 * 55.00088 * 7 6 5 33 33 H 1.09002 * 109.47200 * 294.99631 * 7 6 5 34 34 H 1.00898 * 110.99883 * 303.94996 * 8 7 6 35 35 H 1.08994 * 109.46846 * 180.02562 * 11 9 8 36 36 H 1.09001 * 109.46592 * 299.99704 * 11 9 8 37 37 H 1.08990 * 109.47127 * 59.99831 * 11 9 8 38 38 H 0.96999 * 120.00128 * 180.27192 * 15 14 12 39 39 H 1.08995 * 109.50572 * 62.27654 * 20 6 5 40 40 H 1.09002 * 109.50662 * 182.40083 * 20 6 5 41 41 H 1.09000 * 109.46287 * 294.17707 * 21 3 2 42 42 H 1.09002 * 109.45648 * 54.15752 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4680 1.4311 0.2380 5 6 3.9175 2.8875 0.3762 6 6 3.5675 3.6482 -0.9058 7 6 3.9593 5.1190 -0.7506 8 7 3.7344 5.8223 -2.0205 9 6 4.1012 7.2404 -1.9091 10 1 4.9604 7.3426 -1.2462 11 6 2.9206 8.0292 -1.3388 12 6 4.4522 7.7773 -3.2728 13 1 4.4076 7.1296 -4.1359 14 6 4.8311 9.0949 -3.4184 15 7 5.1426 9.5620 -4.6077 16 14 4.9087 10.2150 -1.9254 17 1 3.5940 10.8790 -1.7360 18 1 5.2357 9.4114 -0.7202 19 1 5.9581 11.2449 -2.1333 20 6 2.0607 3.5439 -1.1567 21 6 1.6650 2.0685 -1.2504 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.9888 0.9682 -0.6002 28 1 3.7027 0.8901 1.1547 29 1 4.9949 2.9221 0.5372 30 1 3.4073 3.3471 1.2227 31 1 4.1087 3.2139 -1.7463 32 1 5.0127 5.1877 -0.4788 33 1 3.3520 5.5764 0.0305 34 1 4.2367 5.3775 -2.7741 35 1 3.1926 9.0815 -1.2566 36 1 2.0614 7.9271 -2.0017 37 1 2.6667 7.6410 -0.3526 38 1 5.4130 10.4879 -4.7096 39 1 1.5214 4.0137 -0.3342 40 1 1.8115 4.0475 -2.0908 41 1 2.1943 1.6027 -2.0817 42 1 0.5903 1.9906 -1.4147 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044518614.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:22 Heat of formation + Delta-G solvation = -8.687403 kcal Electronic energy + Delta-G solvation = -17814.654253 eV Core-core repulsion = 15214.889376 eV Total energy + Delta-G solvation = -2599.764878 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.23664 -36.47131 -34.41411 -32.25549 -30.91464 -30.41831 -28.77478 -25.64215 -24.77379 -23.26490 -22.15694 -20.96070 -19.86826 -19.46708 -16.75808 -16.15670 -15.40328 -15.14882 -14.60737 -14.31889 -14.15876 -13.87160 -13.31348 -13.30468 -12.94248 -12.77643 -12.22368 -12.10073 -11.95928 -11.68037 -11.64316 -11.28945 -11.12243 -11.07710 -10.83330 -10.66401 -10.31964 -10.11223 -10.04138 -9.96760 -9.43360 -8.98333 -8.59350 -8.36424 -7.42873 -6.08728 -4.08276 3.28303 3.37566 3.40139 3.83648 4.39939 4.75350 4.83447 4.91400 5.02355 5.09260 5.24159 5.29070 5.32445 5.42336 5.47419 5.57113 5.60922 5.66161 5.76070 5.83214 5.89974 5.97576 6.03009 6.12297 6.19233 6.25106 6.36858 6.45355 6.52381 6.61261 6.70161 6.77650 6.85717 7.06679 7.10104 7.42576 7.60814 7.98369 8.39076 8.64673 8.96167 9.53996 11.04327 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.050495 B = 0.004419 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.374464 B = 6335.352851 C = 6420.098591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 N -0.539 5.539 4 C 0.059 3.941 5 C -0.111 4.111 6 C -0.084 4.084 7 C 0.064 3.936 8 N -0.677 5.677 9 C 0.181 3.819 10 H -0.001 1.001 11 C -0.136 4.136 12 C -0.519 4.519 13 H 0.078 0.922 14 C 0.070 3.930 15 N -0.900 5.900 16 Si 0.892 3.108 17 H -0.278 1.278 18 H -0.269 1.269 19 H -0.298 1.298 20 C -0.100 4.100 21 C 0.052 3.948 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.029 0.971 26 H 0.070 0.930 27 H 0.030 0.970 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.018 0.982 33 H 0.063 0.937 34 H 0.337 0.663 35 H 0.035 0.965 36 H 0.057 0.943 37 H 0.025 0.975 38 H 0.264 0.736 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.029 0.971 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.653 -16.978 10.304 20.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 N -0.265 5.265 4 C -0.069 4.069 5 C -0.150 4.150 6 C -0.103 4.103 7 C -0.066 4.066 8 N -0.308 5.308 9 C 0.072 3.928 10 H 0.016 0.984 11 C -0.193 4.193 12 C -0.557 4.557 13 H 0.096 0.904 14 C -0.132 4.132 15 N -0.538 5.538 16 Si 0.722 3.278 17 H -0.205 1.205 18 H -0.194 1.194 19 H -0.226 1.226 20 C -0.138 4.138 21 C -0.076 4.076 22 H 0.081 0.919 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.047 0.953 26 H 0.088 0.912 27 H 0.048 0.952 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.036 0.964 33 H 0.082 0.918 34 H 0.155 0.845 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.044 0.956 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.047 0.953 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.489 -16.453 10.703 20.673 hybrid contribution 1.445 0.258 0.062 1.469 sum -5.044 -16.195 10.764 20.090 Atomic orbital electron populations 1.21807 0.94971 1.01253 1.02652 1.22043 0.96119 0.89282 1.00336 1.61992 1.13822 1.14889 1.35781 1.22047 0.87354 0.97473 1.00017 1.21619 1.00311 0.94286 0.98756 1.21191 0.96768 0.95433 0.96943 1.21975 0.97718 0.92675 0.94271 1.60504 1.62525 1.03664 1.04097 1.19516 0.91573 0.84875 0.96789 0.98357 1.22050 1.00800 0.98125 0.98370 1.21122 1.45306 0.96632 0.92627 0.90417 1.24938 0.94580 0.97931 0.95707 1.69895 1.46002 1.15695 1.22191 0.86789 0.76952 0.80362 0.83649 1.20509 1.19410 1.22597 1.21515 0.95199 0.93831 1.03260 1.22229 1.00509 0.95554 0.89273 0.91868 0.92508 0.92580 0.95277 0.91154 0.95208 0.91228 0.91803 0.91140 0.91907 0.96363 0.91832 0.84530 0.94649 0.92395 0.95596 0.92616 0.91606 0.89950 0.95277 0.90804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.84 37.16 0.37 -0.89 16 2 C 0.05 0.47 5.68 -3.83 -0.02 0.45 16 3 N -0.54 -6.14 4.66 -234.66 -1.09 -7.23 16 4 C 0.06 0.65 5.46 -3.83 -0.02 0.62 16 5 C -0.11 -1.33 5.38 -26.65 -0.14 -1.48 16 6 C -0.08 -1.17 2.40 -90.50 -0.22 -1.39 16 7 C 0.06 1.07 4.88 -3.83 -0.02 1.06 16 8 N -0.68 -13.73 5.82 -107.95 -0.63 -14.36 16 9 C 0.18 4.35 2.19 -68.86 -0.15 4.20 16 10 H 0.00 -0.03 6.85 -51.93 -0.36 -0.38 16 11 C -0.14 -3.09 8.89 37.16 0.33 -2.76 16 12 C -0.52 -14.63 9.17 -34.44 -0.32 -14.94 16 13 H 0.08 2.35 7.86 -52.49 -0.41 1.94 16 14 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 15 N -0.90 -27.62 13.96 55.43 0.77 -26.84 16 16 Si 0.89 22.34 24.37 -169.99 -4.14 18.20 16 17 H -0.28 -6.81 6.88 56.52 0.39 -6.42 16 18 H -0.27 -6.52 6.52 56.52 0.37 -6.15 16 19 H -0.30 -7.45 7.11 56.52 0.40 -7.04 16 20 C -0.10 -1.37 5.24 -26.65 -0.14 -1.51 16 21 C 0.05 0.62 5.29 -3.83 -0.02 0.60 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.50 6.43 -51.93 -0.33 0.16 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.03 0.27 8.12 -51.93 -0.42 -0.15 16 26 H 0.07 0.60 7.99 -51.93 -0.41 0.19 16 27 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.68 8.02 -51.93 -0.42 0.26 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.02 0.32 8.05 -51.93 -0.42 -0.10 16 33 H 0.06 1.09 7.44 -51.93 -0.39 0.71 16 34 H 0.34 6.88 8.22 -39.29 -0.32 6.56 16 35 H 0.04 0.83 3.28 -51.93 -0.17 0.66 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 37 H 0.02 0.51 7.45 -51.93 -0.39 0.13 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.08 1.24 7.84 -51.93 -0.41 0.84 16 41 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.83 6.21 -51.93 -0.32 0.51 16 LS Contribution 314.53 15.07 4.74 4.74 Total: -1.00 -29.47 314.53 -8.56 -38.02 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -7.76 Total: 1.56 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -0.45 Total: -14.09 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -0.95 Total: -48.43 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.14 Total: 18.20 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.47 -8.56 -38.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044518614.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.333 kcal (2) G-P(sol) polarization free energy of solvation -29.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds