Wall clock time and date at job start Mon Mar 30 2020 03:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47133 * 2 1 4 4 C 1.46846 * 111.00261 * 170.00087 * 3 2 1 5 5 C 1.53042 * 109.52596 * 185.83987 * 4 3 2 6 6 C 1.53120 * 109.27362 * 300.81950 * 5 4 3 7 7 C 1.52996 * 109.51967 * 177.55932 * 6 5 4 8 8 N 1.46902 * 109.47211 * 175.00201 * 7 6 5 9 9 C 1.46899 * 111.00131 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.47652 * 34.99504 * 9 8 7 11 11 C 1.53009 * 109.46986 * 274.99873 * 9 8 7 12 12 C 1.50702 * 109.47505 * 154.99972 * 9 8 7 13 13 H 1.08002 * 119.99446 * 359.97438 * 12 9 8 14 14 C 1.37871 * 120.00072 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99826 * 179.72119 * 14 12 9 16 16 Si 1.86800 * 120.00406 * 359.97438 * 14 12 9 17 17 H 1.48501 * 109.46758 * 269.72576 * 16 14 12 18 18 H 1.48499 * 109.47026 * 29.72423 * 16 14 12 19 19 H 1.48496 * 109.47474 * 149.72459 * 16 14 12 20 20 C 1.53116 * 109.16326 * 57.65672 * 6 5 4 21 21 C 1.46853 * 110.99914 * 294.20830 * 3 2 1 22 22 H 1.09001 * 109.46895 * 299.99711 * 1 2 3 23 23 H 1.08995 * 109.46853 * 60.00283 * 1 2 3 24 24 H 1.09004 * 109.46862 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47246 * 239.99597 * 2 1 3 26 26 H 1.09000 * 109.47283 * 119.99798 * 2 1 3 27 27 H 1.08999 * 109.46565 * 65.81794 * 4 3 2 28 28 H 1.09000 * 109.46003 * 305.85471 * 4 3 2 29 29 H 1.08995 * 109.50135 * 180.88167 * 5 4 3 30 30 H 1.08997 * 109.50292 * 60.75654 * 5 4 3 31 31 H 1.08999 * 109.52161 * 297.68280 * 6 5 4 32 32 H 1.08997 * 109.47556 * 55.00088 * 7 6 5 33 33 H 1.09002 * 109.47200 * 294.99631 * 7 6 5 34 34 H 1.00898 * 110.99883 * 303.94996 * 8 7 6 35 35 H 1.08994 * 109.46846 * 180.02562 * 11 9 8 36 36 H 1.09001 * 109.46592 * 299.99704 * 11 9 8 37 37 H 1.08990 * 109.47127 * 59.99831 * 11 9 8 38 38 H 0.96999 * 120.00128 * 180.27192 * 15 14 12 39 39 H 1.08995 * 109.50572 * 62.27654 * 20 6 5 40 40 H 1.09002 * 109.50662 * 182.40083 * 20 6 5 41 41 H 1.09000 * 109.46287 * 294.17707 * 21 3 2 42 42 H 1.09002 * 109.45648 * 54.15752 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4680 1.4311 0.2380 5 6 3.9175 2.8875 0.3762 6 6 3.5675 3.6482 -0.9058 7 6 3.9593 5.1190 -0.7506 8 7 3.7344 5.8223 -2.0205 9 6 4.1012 7.2404 -1.9091 10 1 4.9604 7.3426 -1.2462 11 6 2.9206 8.0292 -1.3388 12 6 4.4522 7.7773 -3.2728 13 1 4.4076 7.1296 -4.1359 14 6 4.8311 9.0949 -3.4184 15 7 5.1426 9.5620 -4.6077 16 14 4.9087 10.2150 -1.9254 17 1 3.5940 10.8790 -1.7360 18 1 5.2357 9.4114 -0.7202 19 1 5.9581 11.2449 -2.1333 20 6 2.0607 3.5439 -1.1567 21 6 1.6650 2.0685 -1.2504 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.9888 0.9682 -0.6002 28 1 3.7027 0.8901 1.1547 29 1 4.9949 2.9221 0.5372 30 1 3.4073 3.3471 1.2227 31 1 4.1087 3.2139 -1.7463 32 1 5.0127 5.1877 -0.4788 33 1 3.3520 5.5764 0.0305 34 1 4.2367 5.3775 -2.7741 35 1 3.1926 9.0815 -1.2566 36 1 2.0614 7.9271 -2.0017 37 1 2.6667 7.6410 -0.3526 38 1 5.4130 10.4879 -4.7096 39 1 1.5214 4.0137 -0.3342 40 1 1.8115 4.0475 -2.0908 41 1 2.1943 1.6027 -2.0817 42 1 0.5903 1.9906 -1.4147 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044518614.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:21 Heat of formation + Delta-G solvation = -29.227546 kcal Electronic energy + Delta-G solvation = -17815.544941 eV Core-core repulsion = 15214.889376 eV Total energy + Delta-G solvation = -2600.655565 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.22977 -38.00131 -35.76370 -34.14559 -32.07220 -31.56258 -30.10711 -27.32904 -26.37545 -24.25632 -23.23995 -21.95301 -21.64969 -20.58995 -18.84289 -17.38772 -16.84408 -16.19110 -15.86023 -15.64792 -15.36483 -15.22397 -14.95163 -14.47874 -14.24971 -14.07452 -13.94753 -13.31048 -13.22203 -12.85490 -12.72706 -12.64908 -12.46469 -12.42834 -12.08613 -12.05745 -11.84682 -11.48538 -11.47426 -11.21285 -11.07672 -10.92109 -10.76174 -9.22995 -9.10002 -8.32367 -6.36863 1.30320 1.34444 1.45223 2.30088 3.00083 3.02915 3.46002 3.85632 3.93109 4.01155 4.22653 4.33012 4.41356 4.47577 4.51162 4.57197 4.64179 4.66852 4.67126 4.73828 4.80970 4.88218 4.92707 4.94863 4.99427 5.01637 5.04969 5.12751 5.17612 5.28327 5.39041 5.46202 5.50332 5.57444 5.63393 6.00079 6.20266 6.23975 6.51439 6.65635 6.83848 7.30121 8.84116 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.050495 B = 0.004419 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.374464 B = 6335.352851 C = 6420.098591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 N -0.548 5.548 4 C 0.060 3.940 5 C -0.106 4.106 6 C -0.077 4.077 7 C 0.066 3.934 8 N -0.677 5.677 9 C 0.185 3.815 10 H -0.007 1.007 11 C -0.132 4.132 12 C -0.524 4.524 13 H 0.040 0.960 14 C 0.014 3.986 15 N -0.946 5.946 16 Si 0.954 3.046 17 H -0.266 1.266 18 H -0.252 1.252 19 H -0.297 1.297 20 C -0.095 4.095 21 C 0.058 3.942 22 H 0.057 0.943 23 H 0.050 0.950 24 H 0.072 0.928 25 H 0.030 0.970 26 H 0.082 0.918 27 H 0.029 0.971 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.017 0.983 33 H 0.065 0.935 34 H 0.333 0.667 35 H 0.030 0.970 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.267 0.733 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.025 0.975 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.134 -17.999 12.687 22.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.079 4.079 3 N -0.274 5.274 4 C -0.068 4.068 5 C -0.144 4.144 6 C -0.096 4.096 7 C -0.063 4.063 8 N -0.307 5.307 9 C 0.075 3.925 10 H 0.011 0.989 11 C -0.189 4.189 12 C -0.563 4.563 13 H 0.058 0.942 14 C -0.184 4.184 15 N -0.586 5.586 16 Si 0.781 3.219 17 H -0.192 1.192 18 H -0.176 1.176 19 H -0.225 1.225 20 C -0.133 4.133 21 C -0.070 4.070 22 H 0.076 0.924 23 H 0.069 0.931 24 H 0.091 0.909 25 H 0.048 0.952 26 H 0.100 0.900 27 H 0.047 0.953 28 H 0.105 0.895 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.035 0.965 33 H 0.084 0.916 34 H 0.150 0.850 35 H 0.048 0.952 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.044 0.956 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.983 -17.504 13.102 22.952 hybrid contribution 1.591 0.481 -0.744 1.821 sum -5.392 -17.023 12.358 21.716 Atomic orbital electron populations 1.21786 0.94327 1.02192 1.02075 1.22125 0.96658 0.88162 1.00942 1.62009 1.14131 1.16146 1.35108 1.22060 0.87130 0.96717 1.00850 1.21570 1.00935 0.94720 0.97186 1.21120 0.96824 0.93599 0.98096 1.22047 0.97734 0.94172 0.92383 1.60482 1.62279 1.02260 1.05723 1.19375 0.92018 0.87011 0.94053 0.98932 1.21958 0.99671 0.97601 0.99719 1.21413 1.44806 0.96379 0.93658 0.94181 1.25801 0.94274 0.99659 0.98659 1.70037 1.47616 1.16337 1.24654 0.85778 0.77468 0.78367 0.80313 1.19163 1.17650 1.22479 1.21416 0.94933 0.95039 1.01932 1.22116 1.00881 0.94298 0.89687 0.92369 0.93096 0.90945 0.95197 0.89951 0.95306 0.89472 0.90901 0.91273 0.92389 0.96456 0.91639 0.84970 0.95157 0.93050 0.92682 0.92429 0.92189 0.91867 0.95645 0.90142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.84 71.98 0.71 -1.45 16 2 C 0.05 0.80 5.68 86.30 0.49 1.29 16 3 N -0.55 -11.28 4.66 -896.33 -4.17 -15.46 16 4 C 0.06 1.17 5.46 86.33 0.47 1.64 16 5 C -0.11 -2.30 5.38 30.65 0.16 -2.13 16 6 C -0.08 -2.06 2.40 -10.72 -0.03 -2.08 16 7 C 0.07 2.14 4.88 86.30 0.42 2.56 16 8 N -0.68 -27.28 5.82 -495.43 -2.88 -30.16 16 9 C 0.19 8.76 2.19 44.17 0.10 8.85 16 10 H -0.01 -0.33 6.85 -2.39 -0.02 -0.35 16 11 C -0.13 -5.74 8.89 71.99 0.64 -5.10 16 12 C -0.52 -30.12 9.17 25.60 0.23 -29.88 16 13 H 0.04 2.53 7.86 -2.91 -0.02 2.51 16 14 C 0.01 0.81 5.45 84.65 0.46 1.27 16 15 N -0.95 -59.39 13.96 21.45 0.30 -59.09 16 16 Si 0.95 45.53 24.37 68.60 1.67 47.20 16 17 H -0.27 -12.09 6.88 99.48 0.68 -11.41 16 18 H -0.25 -11.29 6.52 99.48 0.65 -10.64 16 19 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 20 C -0.10 -2.52 5.24 30.65 0.16 -2.36 16 21 C 0.06 1.30 5.29 86.33 0.46 1.76 16 22 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.05 0.80 6.43 -2.39 -0.02 0.79 16 24 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 25 H 0.03 0.49 8.12 -2.39 -0.02 0.47 16 26 H 0.08 1.17 7.99 -2.39 -0.02 1.15 16 27 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.09 1.41 8.02 -2.39 -0.02 1.39 16 29 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.02 0.57 8.05 -2.39 -0.02 0.55 16 33 H 0.07 2.11 7.44 -2.39 -0.02 2.10 16 34 H 0.33 13.83 8.22 -89.70 -0.74 13.09 16 35 H 0.03 1.34 3.28 -2.39 -0.01 1.33 16 36 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.05 2.05 7.45 -2.39 -0.02 2.04 16 38 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 39 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.06 1.90 7.84 -2.39 -0.02 1.88 16 41 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.08 1.70 6.21 -2.39 -0.01 1.69 16 Total: -1.00 -63.06 314.53 -0.66 -63.72 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.15 Total: 19.41 kcal Atomic # 6 Polarization: -29.91 SS G_CDS: 4.28 Total: -25.63 kcal Atomic # 7 Polarization: -97.95 SS G_CDS: -6.76 Total: -104.71 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.67 Total: 47.20 kcal Total: -63.06 -0.66 -63.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044518614.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.491 kcal (2) G-P(sol) polarization free energy of solvation -63.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds