Wall clock time and date at job start Mon Mar 30 2020 03:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46909 * 109.47025 * 2 1 4 4 C 1.46846 * 111.00162 * 45.78723 * 3 2 1 5 5 C 1.53030 * 109.52377 * 185.84294 * 4 3 2 6 6 C 1.53123 * 109.28009 * 300.82027 * 5 4 3 7 7 C 1.52992 * 109.57607 * 177.58926 * 6 5 4 8 8 N 1.46904 * 109.47138 * 65.29049 * 7 6 5 9 9 C 1.46896 * 111.00292 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.47206 * 180.02562 * 9 8 7 11 11 C 1.50704 * 109.46817 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00116 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99510 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00112 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99750 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47256 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.46682 * 119.99935 * 15 13 11 18 18 H 1.48497 * 109.47340 * 239.99940 * 15 13 11 19 19 C 1.53118 * 109.15585 * 57.65675 * 6 5 4 20 20 C 1.46846 * 111.00243 * 170.00251 * 3 2 1 21 21 H 1.08999 * 109.47491 * 59.99991 * 1 2 3 22 22 H 1.09001 * 109.46965 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47102 * 300.00128 * 1 2 3 24 24 H 1.09000 * 109.47102 * 239.99872 * 2 1 3 25 25 H 1.09003 * 109.47357 * 119.99499 * 2 1 3 26 26 H 1.08999 * 109.46373 * 305.86398 * 4 3 2 27 27 H 1.08998 * 109.45881 * 65.82485 * 4 3 2 28 28 H 1.09003 * 109.50272 * 180.88314 * 5 4 3 29 29 H 1.09003 * 109.50540 * 60.76497 * 5 4 3 30 30 H 1.08993 * 109.52379 * 297.75279 * 6 5 4 31 31 H 1.08997 * 109.47298 * 185.28844 * 7 6 5 32 32 H 1.08995 * 109.47743 * 305.28927 * 7 6 5 33 33 H 1.00895 * 111.00137 * 56.04298 * 8 7 6 34 34 H 1.09007 * 109.46824 * 299.99633 * 9 8 7 35 35 H 1.08996 * 109.47307 * 59.99338 * 9 8 7 36 36 H 1.08997 * 109.46947 * 299.99615 * 10 9 8 37 37 H 1.09000 * 109.47284 * 59.99908 * 10 9 8 38 38 H 0.96999 * 119.99981 * 179.97438 * 14 13 11 39 39 H 1.09008 * 109.50062 * 182.40805 * 19 6 5 40 40 H 1.09002 * 109.53946 * 62.30558 * 19 6 5 41 41 H 1.08998 * 109.45759 * 294.17597 * 20 3 2 42 42 H 1.09003 * 109.46299 * 54.15067 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.2938 2.1999 0.9826 5 6 1.7263 3.6622 0.8539 6 6 3.2353 3.7659 1.0921 7 6 3.6852 5.2163 0.9058 8 7 3.0762 6.0553 1.9465 9 6 3.4862 7.4582 1.7986 10 6 2.8339 8.2988 2.8980 11 6 3.2550 9.7379 2.7466 12 1 3.9215 10.0241 1.9465 13 6 2.7893 10.6890 3.6295 14 7 1.9772 10.3405 4.6035 15 14 3.3118 12.4726 3.4423 16 1 4.2219 12.6019 2.2760 17 1 2.1112 13.3203 3.2291 18 1 4.0171 12.9136 4.6724 19 6 3.9654 2.8707 0.0870 20 6 3.4680 1.4313 0.2380 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 0.2222 2.1206 0.7995 27 1 1.5177 1.8420 1.9875 28 1 1.1989 4.2642 1.5939 29 1 1.4900 4.0249 -0.1465 30 1 3.4673 3.4399 2.1059 31 1 4.7710 5.2727 0.9829 32 1 3.3719 5.5707 -0.0761 33 1 3.2993 5.7083 2.8673 34 1 4.5707 7.5304 1.8817 35 1 3.1711 7.8278 0.8228 36 1 1.7494 8.2266 2.8154 37 1 3.1494 7.9290 3.8736 38 1 1.6499 11.0095 5.2249 39 1 5.0378 2.9071 0.2791 40 1 3.7649 3.2206 -0.9257 41 1 3.6817 1.0770 1.2464 42 1 3.9755 0.7939 -0.4861 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044518715.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:18 Heat of formation + Delta-G solvation = -21.246451 kcal Electronic energy + Delta-G solvation = -17264.432588 eV Core-core repulsion = 14664.123109 eV Total energy + Delta-G solvation = -2600.309479 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.37448 -36.43492 -34.29495 -32.70726 -31.07214 -30.32126 -28.82578 -25.91407 -23.86748 -23.40074 -21.96581 -20.97202 -20.49216 -19.54263 -16.31483 -16.27758 -15.41330 -15.00800 -14.88929 -14.52908 -14.30026 -14.11835 -13.54134 -13.41848 -13.00568 -12.63930 -12.29050 -12.05559 -11.89028 -11.76159 -11.60380 -11.27965 -11.15609 -11.00437 -10.92602 -10.57711 -10.47114 -10.24058 -10.21574 -9.89178 -9.31470 -9.10035 -8.41155 -8.33588 -7.74164 -5.98048 -4.00336 3.32368 3.39603 3.43903 3.77856 4.44635 4.64416 4.72592 4.82825 4.90030 4.97702 5.16311 5.23831 5.27982 5.37593 5.38023 5.45117 5.51702 5.57649 5.69576 5.72921 5.81067 5.82102 5.91107 5.97910 6.08006 6.09427 6.21509 6.38669 6.45213 6.48394 6.57852 6.99126 7.01950 7.03031 7.53370 7.76451 7.86555 8.00806 8.11748 8.46447 9.07308 9.63360 11.13461 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.054407 B = 0.003461 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.511803 B = 8088.078311 C = 8426.326468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.051 3.949 3 N -0.539 5.539 4 C 0.048 3.952 5 C -0.102 4.102 6 C -0.085 4.085 7 C 0.064 3.936 8 N -0.690 5.690 9 C 0.066 3.934 10 C 0.025 3.975 11 C -0.520 4.520 12 H 0.054 0.946 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.111 4.111 20 C 0.059 3.941 21 H 0.064 0.936 22 H 0.057 0.943 23 H 0.060 0.940 24 H 0.072 0.928 25 H 0.029 0.971 26 H 0.079 0.921 27 H 0.029 0.971 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.020 0.980 32 H 0.067 0.933 33 H 0.334 0.666 34 H 0.013 0.987 35 H 0.057 0.943 36 H 0.025 0.975 37 H 0.013 0.987 38 H 0.260 0.740 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.030 0.970 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.698 -20.291 -8.378 21.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.077 4.077 3 N -0.265 5.265 4 C -0.080 4.080 5 C -0.140 4.140 6 C -0.104 4.104 7 C -0.065 4.065 8 N -0.321 5.321 9 C -0.062 4.062 10 C -0.012 4.012 11 C -0.559 4.559 12 H 0.073 0.927 13 C -0.144 4.144 14 N -0.533 5.533 15 Si 0.720 3.280 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.211 1.211 19 C -0.150 4.150 20 C -0.069 4.069 21 H 0.083 0.917 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.090 0.910 25 H 0.047 0.953 26 H 0.098 0.902 27 H 0.047 0.953 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.038 0.962 32 H 0.086 0.914 33 H 0.151 0.849 34 H 0.031 0.969 35 H 0.076 0.924 36 H 0.043 0.957 37 H 0.031 0.969 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.048 0.952 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.077 -19.928 -9.047 21.886 hybrid contribution 1.394 0.605 1.116 1.886 sum 1.318 -19.323 -7.931 20.929 Atomic orbital electron populations 1.21948 0.95057 1.01696 1.02755 1.22064 0.95798 0.89470 1.00388 1.62039 1.03907 1.10097 1.50435 1.22296 0.98766 0.94244 0.92662 1.21536 0.95205 0.94191 1.03043 1.21196 0.95994 0.94593 0.98617 1.21950 0.95580 0.92098 0.96906 1.60566 1.62411 1.03383 1.05695 1.22142 0.96477 0.86112 1.01471 1.19069 0.96704 0.93118 0.92339 1.21233 1.28574 0.93020 1.13111 0.92735 1.25010 0.95133 0.98975 0.95311 1.69984 1.33048 1.33792 1.16468 0.86534 0.78410 0.85107 0.77934 1.19774 1.20969 1.21050 1.21614 0.98999 0.93892 1.00449 1.22046 0.88078 0.97596 0.99199 0.91695 0.92394 0.92153 0.90970 0.95275 0.90229 0.95309 0.89973 0.91463 0.91919 0.96165 0.91424 0.84940 0.96857 0.92430 0.95652 0.96898 0.93072 0.91794 0.91011 0.95178 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.16 37.16 0.34 -0.90 16 2 C 0.05 0.45 5.99 -3.82 -0.02 0.42 16 3 N -0.54 -5.75 4.81 -234.67 -1.13 -6.87 16 4 C 0.05 0.53 4.85 -3.84 -0.02 0.51 16 5 C -0.10 -1.29 5.24 -26.65 -0.14 -1.43 16 6 C -0.08 -1.06 2.39 -90.50 -0.22 -1.27 16 7 C 0.06 0.95 5.08 -3.83 -0.02 0.93 16 8 N -0.69 -12.43 6.02 -113.79 -0.69 -13.12 16 9 C 0.07 1.43 5.62 -3.83 -0.02 1.41 16 10 C 0.03 0.67 5.23 -27.88 -0.15 0.52 16 11 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 12 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -27.23 13.29 55.43 0.74 -26.49 16 15 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 16 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 19 C -0.11 -1.19 5.38 -26.65 -0.14 -1.34 16 20 C 0.06 0.59 5.42 -3.84 -0.02 0.57 16 21 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 23 H 0.06 0.49 6.21 -51.93 -0.32 0.17 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.03 0.25 8.08 -51.93 -0.42 -0.17 16 26 H 0.08 0.84 5.81 -51.93 -0.30 0.53 16 27 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.08 1.17 7.84 -51.93 -0.41 0.76 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.33 5.84 8.73 -39.29 -0.34 5.50 16 34 H 0.01 0.28 8.14 -51.92 -0.42 -0.14 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 39 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 LS Contribution 326.90 15.07 4.93 4.93 Total: -1.00 -29.97 326.90 -10.09 -40.06 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -8.10 Total: -1.03 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -0.82 Total: -14.36 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -1.08 Total: -46.48 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.97 -10.09 -40.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044518715.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.816 kcal (2) G-P(sol) polarization free energy of solvation -29.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds