Wall clock time and date at job start Mon Mar 30 2020 03:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46909 * 109.47025 * 2 1 4 4 C 1.46846 * 111.00162 * 45.78723 * 3 2 1 5 5 C 1.53030 * 109.52377 * 185.84294 * 4 3 2 6 6 C 1.53123 * 109.28009 * 300.82027 * 5 4 3 7 7 C 1.52992 * 109.57607 * 177.58926 * 6 5 4 8 8 N 1.46904 * 109.47138 * 65.29049 * 7 6 5 9 9 C 1.46896 * 111.00292 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.47206 * 180.02562 * 9 8 7 11 11 C 1.50704 * 109.46817 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00116 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99510 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00112 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99750 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47256 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.46682 * 119.99935 * 15 13 11 18 18 H 1.48497 * 109.47340 * 239.99940 * 15 13 11 19 19 C 1.53118 * 109.15585 * 57.65675 * 6 5 4 20 20 C 1.46846 * 111.00243 * 170.00251 * 3 2 1 21 21 H 1.08999 * 109.47491 * 59.99991 * 1 2 3 22 22 H 1.09001 * 109.46965 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47102 * 300.00128 * 1 2 3 24 24 H 1.09000 * 109.47102 * 239.99872 * 2 1 3 25 25 H 1.09003 * 109.47357 * 119.99499 * 2 1 3 26 26 H 1.08999 * 109.46373 * 305.86398 * 4 3 2 27 27 H 1.08998 * 109.45881 * 65.82485 * 4 3 2 28 28 H 1.09003 * 109.50272 * 180.88314 * 5 4 3 29 29 H 1.09003 * 109.50540 * 60.76497 * 5 4 3 30 30 H 1.08993 * 109.52379 * 297.75279 * 6 5 4 31 31 H 1.08997 * 109.47298 * 185.28844 * 7 6 5 32 32 H 1.08995 * 109.47743 * 305.28927 * 7 6 5 33 33 H 1.00895 * 111.00137 * 56.04298 * 8 7 6 34 34 H 1.09007 * 109.46824 * 299.99633 * 9 8 7 35 35 H 1.08996 * 109.47307 * 59.99338 * 9 8 7 36 36 H 1.08997 * 109.46947 * 299.99615 * 10 9 8 37 37 H 1.09000 * 109.47284 * 59.99908 * 10 9 8 38 38 H 0.96999 * 119.99981 * 179.97438 * 14 13 11 39 39 H 1.09008 * 109.50062 * 182.40805 * 19 6 5 40 40 H 1.09002 * 109.53946 * 62.30558 * 19 6 5 41 41 H 1.08998 * 109.45759 * 294.17597 * 20 3 2 42 42 H 1.09003 * 109.46299 * 54.15067 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.2938 2.1999 0.9826 5 6 1.7263 3.6622 0.8539 6 6 3.2353 3.7659 1.0921 7 6 3.6852 5.2163 0.9058 8 7 3.0762 6.0553 1.9465 9 6 3.4862 7.4582 1.7986 10 6 2.8339 8.2988 2.8980 11 6 3.2550 9.7379 2.7466 12 1 3.9215 10.0241 1.9465 13 6 2.7893 10.6890 3.6295 14 7 1.9772 10.3405 4.6035 15 14 3.3118 12.4726 3.4423 16 1 4.2219 12.6019 2.2760 17 1 2.1112 13.3203 3.2291 18 1 4.0171 12.9136 4.6724 19 6 3.9654 2.8707 0.0870 20 6 3.4680 1.4313 0.2380 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 0.2222 2.1206 0.7995 27 1 1.5177 1.8420 1.9875 28 1 1.1989 4.2642 1.5939 29 1 1.4900 4.0249 -0.1465 30 1 3.4673 3.4399 2.1059 31 1 4.7710 5.2727 0.9829 32 1 3.3719 5.5707 -0.0761 33 1 3.2993 5.7083 2.8673 34 1 4.5707 7.5304 1.8817 35 1 3.1711 7.8278 0.8228 36 1 1.7494 8.2266 2.8154 37 1 3.1494 7.9290 3.8736 38 1 1.6499 11.0095 5.2249 39 1 5.0378 2.9071 0.2791 40 1 3.7649 3.2206 -0.9257 41 1 3.6817 1.0770 1.2464 42 1 3.9755 0.7939 -0.4861 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044518715.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:18 Heat of formation + Delta-G solvation = -40.829347 kcal Electronic energy + Delta-G solvation = -17265.281766 eV Core-core repulsion = 14664.123109 eV Total energy + Delta-G solvation = -2601.158657 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.28086 -37.76335 -35.74753 -34.52079 -32.12121 -31.51359 -30.24222 -27.30583 -25.49366 -24.39575 -22.99281 -22.49175 -21.73858 -20.54870 -18.51065 -17.20623 -16.68097 -16.47840 -15.97151 -15.76649 -15.51311 -15.34357 -14.84179 -14.45872 -14.36109 -13.87973 -13.78961 -13.41754 -13.14564 -12.87679 -12.75929 -12.56104 -12.43761 -12.40112 -12.09240 -12.00353 -11.90321 -11.60881 -11.46517 -11.33780 -11.05939 -10.96636 -10.57356 -9.24870 -9.20793 -8.20913 -6.32452 1.40043 1.40722 1.54109 2.40303 2.99921 3.12437 3.34657 3.81411 3.90584 3.99855 4.21767 4.26514 4.37624 4.44248 4.50178 4.52307 4.57911 4.62188 4.65052 4.68174 4.82023 4.88895 4.93336 4.98703 5.00431 5.06959 5.11348 5.13866 5.28093 5.32671 5.41097 5.45509 5.54519 5.67555 5.78738 6.14340 6.19441 6.22364 6.29529 6.56106 6.85091 7.36877 8.91487 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.054407 B = 0.003461 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.511803 B = 8088.078311 C = 8426.326468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.049 3.951 3 N -0.550 5.550 4 C 0.054 3.946 5 C -0.099 4.099 6 C -0.078 4.078 7 C 0.068 3.932 8 N -0.694 5.694 9 C 0.084 3.916 10 C 0.032 3.968 11 C -0.545 4.545 12 H 0.060 0.940 13 C 0.000 4.000 14 N -0.932 5.932 15 Si 0.968 3.032 16 H -0.262 1.262 17 H -0.277 1.277 18 H -0.277 1.277 19 C -0.106 4.106 20 C 0.059 3.941 21 H 0.058 0.942 22 H 0.073 0.927 23 H 0.054 0.946 24 H 0.082 0.918 25 H 0.032 0.968 26 H 0.084 0.916 27 H 0.026 0.974 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.028 0.972 32 H 0.064 0.936 33 H 0.337 0.663 34 H 0.017 0.983 35 H 0.055 0.945 36 H -0.006 1.006 37 H -0.009 1.009 38 H 0.264 0.736 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.030 0.970 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.634 -20.847 -9.328 22.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.078 4.078 3 N -0.276 5.276 4 C -0.074 4.074 5 C -0.137 4.137 6 C -0.097 4.097 7 C -0.061 4.061 8 N -0.325 5.325 9 C -0.045 4.045 10 C -0.005 4.005 11 C -0.584 4.584 12 H 0.078 0.922 13 C -0.198 4.198 14 N -0.572 5.572 15 Si 0.792 3.208 16 H -0.186 1.186 17 H -0.203 1.203 18 H -0.202 1.202 19 C -0.144 4.144 20 C -0.069 4.069 21 H 0.077 0.923 22 H 0.092 0.908 23 H 0.073 0.927 24 H 0.100 0.900 25 H 0.050 0.950 26 H 0.102 0.898 27 H 0.045 0.955 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.047 0.953 32 H 0.083 0.917 33 H 0.154 0.846 34 H 0.035 0.965 35 H 0.074 0.926 36 H 0.013 0.987 37 H 0.009 0.991 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.048 0.952 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.866 -20.509 -10.010 22.838 hybrid contribution 1.073 0.720 1.416 1.917 sum 1.939 -19.789 -8.594 21.661 Atomic orbital electron populations 1.21926 0.94523 1.02571 1.02182 1.22136 0.96287 0.88422 1.00961 1.62050 1.04259 1.11147 1.50100 1.22188 0.99182 0.93205 0.92805 1.21451 0.95310 0.95162 1.01733 1.21133 0.95948 0.93340 0.99289 1.21999 0.95840 0.92830 0.95469 1.60473 1.63044 1.02142 1.06831 1.21761 0.95983 0.87498 0.99217 1.18917 0.94983 0.93586 0.93032 1.21655 1.28909 0.94324 1.13466 0.92221 1.25993 0.94932 1.04131 0.94765 1.70114 1.34080 1.35645 1.17332 0.85356 0.78274 0.78747 0.78393 1.18590 1.20301 1.20236 1.21569 0.99485 0.93909 0.99422 1.22071 0.87852 0.97199 0.99729 0.92271 0.90843 0.92674 0.90002 0.94988 0.89770 0.95542 0.91984 0.92387 0.91977 0.95350 0.91735 0.84602 0.96501 0.92605 0.98744 0.99074 0.92716 0.90537 0.91364 0.95153 0.89567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.16 71.98 0.66 -1.54 16 2 C 0.05 0.78 5.99 86.30 0.52 1.29 16 3 N -0.55 -10.81 4.81 -896.36 -4.31 -15.12 16 4 C 0.05 1.16 4.85 86.32 0.42 1.58 16 5 C -0.10 -2.49 5.24 30.65 0.16 -2.32 16 6 C -0.08 -1.87 2.39 -10.72 -0.03 -1.90 16 7 C 0.07 1.94 5.08 86.30 0.44 2.38 16 8 N -0.69 -25.11 6.02 -513.91 -3.10 -28.20 16 9 C 0.08 3.66 5.62 86.30 0.49 4.14 16 10 C 0.03 1.76 5.23 29.85 0.16 1.92 16 11 C -0.55 -31.76 9.11 25.60 0.23 -31.53 16 12 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 13 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 14 N -0.93 -57.60 13.29 21.45 0.28 -57.32 16 15 Si 0.97 44.81 29.54 68.60 2.03 46.83 16 16 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 17 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 19 C -0.11 -2.06 5.38 30.65 0.16 -1.90 16 20 C 0.06 1.07 5.42 86.33 0.47 1.53 16 21 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 22 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.05 0.84 6.21 -2.39 -0.01 0.82 16 24 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.03 0.49 8.08 -2.39 -0.02 0.47 16 26 H 0.08 1.72 5.81 -2.39 -0.01 1.70 16 27 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 1.80 7.84 -2.39 -0.02 1.78 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.03 0.78 8.14 -2.39 -0.02 0.77 16 32 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.34 11.88 8.73 -89.70 -0.78 11.09 16 34 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 35 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 36 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 37 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 38 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 39 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.09 1.30 8.12 -2.39 -0.02 1.28 16 Total: -1.00 -63.90 326.90 -0.79 -64.68 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.17 Total: 15.02 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: 4.14 Total: -25.90 kcal Atomic # 7 Polarization: -93.53 SS G_CDS: -7.12 Total: -100.64 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -63.90 -0.79 -64.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044518715.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.855 kcal (2) G-P(sol) polarization free energy of solvation -63.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds