Wall clock time and date at job start Mon Mar 30 2020 03:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 N 1.46903 * 109.47578 * 185.00096 * 4 2 1 6 6 C 1.46903 * 111.00177 * 180.02562 * 5 4 2 7 7 H 1.09002 * 109.46758 * 324.99916 * 6 5 4 8 8 C 1.53002 * 109.47319 * 84.99846 * 6 5 4 9 9 C 1.50696 * 109.46884 * 205.00223 * 6 5 4 10 10 H 1.08006 * 120.00079 * 359.97438 * 9 6 5 11 11 C 1.37878 * 119.99987 * 179.97438 * 9 6 5 12 12 N 1.31514 * 119.99824 * 179.97438 * 11 9 6 13 13 Si 1.86800 * 120.00038 * 359.97438 * 11 9 6 14 14 H 1.48501 * 109.47271 * 89.99721 * 13 11 9 15 15 H 1.48493 * 109.47246 * 210.00111 * 13 11 9 16 16 H 1.48505 * 109.46706 * 330.00155 * 13 11 9 17 17 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 18 18 C 1.46847 * 110.99731 * 59.21266 * 17 2 1 19 19 C 1.53039 * 109.52635 * 174.15657 * 18 17 2 20 20 C 1.53121 * 109.27321 * 59.17782 * 19 18 17 21 21 C 1.53113 * 109.16518 * 302.34684 * 20 19 18 22 22 C 1.46846 * 111.00430 * 295.00127 * 17 2 1 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 26 26 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 27 27 H 1.09004 * 109.47313 * 64.99993 * 4 2 1 28 28 H 1.00895 * 110.99987 * 56.04684 * 5 4 2 29 29 H 1.08998 * 109.46707 * 180.02562 * 8 6 5 30 30 H 1.09006 * 109.46758 * 299.99912 * 8 6 5 31 31 H 1.09000 * 109.47029 * 59.99776 * 8 6 5 32 32 H 0.97003 * 119.99519 * 180.02562 * 12 11 9 33 33 H 1.08999 * 109.46258 * 294.17720 * 18 17 2 34 34 H 1.09003 * 109.46366 * 54.14195 * 18 17 2 35 35 H 1.08999 * 109.50438 * 299.24454 * 19 18 17 36 36 H 1.09000 * 109.50784 * 179.11710 * 19 18 17 37 37 H 1.08998 * 109.52392 * 182.44066 * 20 19 18 38 38 H 1.09002 * 109.57374 * 62.28238 * 20 19 18 39 39 H 1.09005 * 109.50542 * 297.71805 * 21 20 19 40 40 H 1.08996 * 109.50512 * 177.59704 * 21 20 19 41 41 H 1.08998 * 109.46258 * 305.85455 * 22 17 2 42 42 H 1.08998 * 109.45865 * 65.83445 * 22 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 7 3.5041 -0.8267 -1.1903 6 6 4.0305 -1.5149 -2.3766 7 1 3.3293 -2.2890 -2.6885 8 6 4.2144 -0.5059 -3.5120 9 6 5.3586 -2.1445 -2.0440 10 1 5.7707 -2.0432 -1.0508 11 6 6.0477 -2.8500 -3.0076 12 7 7.2070 -3.3990 -2.7174 13 14 5.3347 -3.0258 -4.7252 14 1 5.7999 -1.8982 -5.5721 15 1 5.7856 -4.3099 -5.3192 16 1 3.8517 -3.0091 -4.6495 17 7 2.0196 -0.6924 1.1995 18 6 1.5334 -2.0774 1.2430 19 6 2.1777 -2.8089 2.4228 20 6 1.8222 -2.0823 3.7229 21 6 2.2964 -0.6293 3.6326 22 6 1.6488 0.0390 2.4177 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.6054 -1.7198 -1.2951 27 1 1.7517 -0.1584 -2.1369 28 1 3.7996 -1.2884 -0.3432 29 1 4.6045 -1.0167 -4.3923 30 1 3.2536 -0.0505 -3.7525 31 1 4.9155 0.2682 -3.2000 32 1 7.6919 -3.8950 -3.3955 33 1 0.4501 -2.0783 1.3628 34 1 1.7964 -2.5839 0.3143 35 1 3.2603 -2.8203 2.2966 36 1 1.8047 -3.8322 2.4641 37 1 2.3144 -2.5747 4.5616 38 1 0.7424 -2.1046 3.8702 39 1 3.3810 -0.6064 3.5254 40 1 2.0084 -0.0955 4.5382 41 1 1.9956 1.0696 2.3422 42 1 0.5649 0.0279 2.5321 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044993114.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:13 Heat of formation + Delta-G solvation = -2.266585 kcal Electronic energy + Delta-G solvation = -18430.955990 eV Core-core repulsion = 15831.469540 eV Total energy + Delta-G solvation = -2599.486450 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.42480 -36.21022 -34.37775 -32.10822 -30.78120 -30.02474 -28.86160 -25.39975 -24.67299 -23.70777 -22.87127 -20.37280 -19.71519 -19.00055 -16.69017 -16.23804 -15.37364 -14.83515 -14.45360 -14.31184 -14.04774 -13.79108 -13.53526 -13.04333 -12.87897 -12.58329 -12.22146 -12.07473 -12.03500 -11.86940 -11.53598 -11.27626 -10.95107 -10.76726 -10.64632 -10.57831 -10.35738 -10.22179 -10.04381 -9.99475 -9.41329 -8.93519 -8.54284 -8.02322 -7.27576 -6.03315 -4.01903 3.30920 3.39842 3.42605 4.04576 4.44080 4.85320 4.88864 4.95247 5.04720 5.24138 5.30317 5.35825 5.40341 5.44712 5.60119 5.64281 5.70655 5.78845 5.80360 5.86202 5.95173 5.97689 6.09929 6.12164 6.15926 6.24875 6.35304 6.42233 6.49695 6.52161 6.63108 6.81834 6.89036 7.34020 7.35244 7.48882 7.69227 8.09182 8.59300 8.75856 9.04464 9.59915 11.09855 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028893 B = 0.006419 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.865198 B = 4361.052217 C = 4904.866263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.084 3.916 3 H 0.087 0.913 4 C 0.067 3.933 5 N -0.671 5.671 6 C 0.180 3.820 7 H -0.004 1.004 8 C -0.136 4.136 9 C -0.514 4.514 10 H 0.079 0.921 11 C 0.070 3.930 12 N -0.900 5.900 13 Si 0.891 3.109 14 H -0.279 1.279 15 H -0.299 1.299 16 H -0.270 1.270 17 N -0.521 5.521 18 C 0.050 3.950 19 C -0.119 4.119 20 C -0.119 4.119 21 C -0.117 4.117 22 C 0.058 3.942 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.017 0.983 27 H 0.063 0.937 28 H 0.351 0.649 29 H 0.034 0.966 30 H 0.023 0.977 31 H 0.057 0.943 32 H 0.263 0.737 33 H 0.029 0.971 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.129 4.848 9.342 17.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.024 4.024 3 H 0.106 0.894 4 C -0.064 4.064 5 N -0.304 5.304 6 C 0.071 3.929 7 H 0.013 0.987 8 C -0.194 4.194 9 C -0.552 4.552 10 H 0.097 0.903 11 C -0.132 4.132 12 N -0.539 5.539 13 Si 0.722 3.278 14 H -0.206 1.206 15 H -0.227 1.227 16 H -0.195 1.195 17 N -0.245 5.245 18 C -0.078 4.078 19 C -0.156 4.156 20 C -0.156 4.156 21 C -0.155 4.155 22 C -0.070 4.070 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.035 0.965 27 H 0.082 0.918 28 H 0.172 0.828 29 H 0.053 0.947 30 H 0.042 0.958 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.047 0.953 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -13.343 5.346 8.997 16.958 hybrid contribution -1.457 -1.011 -0.863 1.972 sum -14.800 4.335 8.134 17.436 Atomic orbital electron populations 1.22453 0.98234 1.01921 1.01845 1.21786 0.91392 0.99066 0.90199 0.89446 1.21980 0.91415 0.97385 0.95611 1.60397 1.05771 1.57874 1.06374 1.19518 0.95364 0.90100 0.87904 0.98687 1.22065 0.98846 1.00214 0.98264 1.21137 1.02624 1.31667 0.99801 0.90321 1.24936 0.94626 0.95064 0.98554 1.69901 1.13988 1.35599 1.34389 0.86808 0.79730 0.76132 0.85154 1.20590 1.22676 1.19515 1.62020 1.59368 1.01682 1.01466 1.22151 0.96446 0.89640 0.99519 1.21595 1.02334 0.97952 0.93756 1.21555 1.00211 0.96032 0.97826 1.21585 1.01798 0.95450 0.96663 1.22040 0.97150 0.97766 0.90090 0.92594 0.92130 0.92769 0.96456 0.91826 0.82816 0.94738 0.95766 0.92380 0.92716 0.95299 0.90336 0.90503 0.91966 0.92140 0.92869 0.90770 0.92137 0.91001 0.95370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.16 8.50 37.16 0.32 -1.84 16 2 C 0.08 1.19 2.66 -67.72 -0.18 1.01 16 3 H 0.09 1.27 8.08 -51.93 -0.42 0.85 16 4 C 0.07 1.14 4.55 -3.83 -0.02 1.13 16 5 N -0.67 -14.15 6.29 -107.95 -0.68 -14.83 16 6 C 0.18 4.40 2.19 -68.86 -0.15 4.25 16 7 H 0.00 -0.11 6.85 -51.93 -0.36 -0.47 16 8 C -0.14 -3.14 8.90 37.16 0.33 -2.81 16 9 C -0.51 -14.71 9.17 -34.44 -0.32 -15.03 16 10 H 0.08 2.44 7.86 -52.48 -0.41 2.03 16 11 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 12 N -0.90 -27.87 13.96 55.43 0.77 -27.09 16 13 Si 0.89 22.55 24.38 -169.99 -4.14 18.41 16 14 H -0.28 -6.90 6.87 56.52 0.39 -6.51 16 15 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 16 H -0.27 -6.61 6.53 56.52 0.37 -6.24 16 17 N -0.52 -7.30 3.72 -226.69 -0.84 -8.14 16 18 C 0.05 0.69 4.58 -3.83 -0.02 0.67 16 19 C -0.12 -1.50 6.09 -26.65 -0.16 -1.66 16 20 C -0.12 -1.28 6.00 -26.61 -0.16 -1.44 16 21 C -0.12 -1.29 6.09 -26.65 -0.16 -1.45 16 22 C 0.06 0.68 5.02 -3.83 -0.02 0.66 16 23 H 0.06 0.66 6.52 -51.93 -0.34 0.32 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.58 6.65 -51.93 -0.35 0.23 16 26 H 0.02 0.31 6.48 -51.93 -0.34 -0.03 16 27 H 0.06 1.08 7.44 -51.93 -0.39 0.69 16 28 H 0.35 7.68 7.32 -39.29 -0.29 7.39 16 29 H 0.03 0.82 3.28 -51.93 -0.17 0.65 16 30 H 0.02 0.48 7.45 -51.93 -0.39 0.09 16 31 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 33 H 0.03 0.37 6.62 -51.93 -0.34 0.02 16 34 H 0.08 1.23 6.14 -51.93 -0.32 0.91 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 42 H 0.03 0.32 6.73 -51.93 -0.35 -0.03 16 LS Contribution 307.01 15.07 4.63 4.63 Total: -1.00 -29.69 307.01 -8.34 -38.02 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -7.43 Total: 3.57 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -0.64 Total: -14.56 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: -0.75 Total: -50.07 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.14 Total: 18.41 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.69 -8.34 -38.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044993114.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.758 kcal (2) G-P(sol) polarization free energy of solvation -29.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds