Wall clock time and date at job start Mon Mar 30 2020 03:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 N 1.46903 * 109.47578 * 185.00096 * 4 2 1 6 6 C 1.46903 * 111.00177 * 180.02562 * 5 4 2 7 7 H 1.09002 * 109.46758 * 324.99916 * 6 5 4 8 8 C 1.53002 * 109.47319 * 84.99846 * 6 5 4 9 9 C 1.50696 * 109.46884 * 205.00223 * 6 5 4 10 10 H 1.08006 * 120.00079 * 359.97438 * 9 6 5 11 11 C 1.37878 * 119.99987 * 179.97438 * 9 6 5 12 12 N 1.31514 * 119.99824 * 179.97438 * 11 9 6 13 13 Si 1.86800 * 120.00038 * 359.97438 * 11 9 6 14 14 H 1.48501 * 109.47271 * 89.99721 * 13 11 9 15 15 H 1.48493 * 109.47246 * 210.00111 * 13 11 9 16 16 H 1.48505 * 109.46706 * 330.00155 * 13 11 9 17 17 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 18 18 C 1.46847 * 110.99731 * 59.21266 * 17 2 1 19 19 C 1.53039 * 109.52635 * 174.15657 * 18 17 2 20 20 C 1.53121 * 109.27321 * 59.17782 * 19 18 17 21 21 C 1.53113 * 109.16518 * 302.34684 * 20 19 18 22 22 C 1.46846 * 111.00430 * 295.00127 * 17 2 1 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 26 26 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 27 27 H 1.09004 * 109.47313 * 64.99993 * 4 2 1 28 28 H 1.00895 * 110.99987 * 56.04684 * 5 4 2 29 29 H 1.08998 * 109.46707 * 180.02562 * 8 6 5 30 30 H 1.09006 * 109.46758 * 299.99912 * 8 6 5 31 31 H 1.09000 * 109.47029 * 59.99776 * 8 6 5 32 32 H 0.97003 * 119.99519 * 180.02562 * 12 11 9 33 33 H 1.08999 * 109.46258 * 294.17720 * 18 17 2 34 34 H 1.09003 * 109.46366 * 54.14195 * 18 17 2 35 35 H 1.08999 * 109.50438 * 299.24454 * 19 18 17 36 36 H 1.09000 * 109.50784 * 179.11710 * 19 18 17 37 37 H 1.08998 * 109.52392 * 182.44066 * 20 19 18 38 38 H 1.09002 * 109.57374 * 62.28238 * 20 19 18 39 39 H 1.09005 * 109.50542 * 297.71805 * 21 20 19 40 40 H 1.08996 * 109.50512 * 177.59704 * 21 20 19 41 41 H 1.08998 * 109.46258 * 305.85455 * 22 17 2 42 42 H 1.08998 * 109.45865 * 65.83445 * 22 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 7 3.5041 -0.8267 -1.1903 6 6 4.0305 -1.5149 -2.3766 7 1 3.3293 -2.2890 -2.6885 8 6 4.2144 -0.5059 -3.5120 9 6 5.3586 -2.1445 -2.0440 10 1 5.7707 -2.0432 -1.0508 11 6 6.0477 -2.8500 -3.0076 12 7 7.2070 -3.3990 -2.7174 13 14 5.3347 -3.0258 -4.7252 14 1 5.7999 -1.8982 -5.5721 15 1 5.7856 -4.3099 -5.3192 16 1 3.8517 -3.0091 -4.6495 17 7 2.0196 -0.6924 1.1995 18 6 1.5334 -2.0774 1.2430 19 6 2.1777 -2.8089 2.4228 20 6 1.8222 -2.0823 3.7229 21 6 2.2964 -0.6293 3.6326 22 6 1.6488 0.0390 2.4177 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.6054 -1.7198 -1.2951 27 1 1.7517 -0.1584 -2.1369 28 1 3.7996 -1.2884 -0.3432 29 1 4.6045 -1.0167 -4.3923 30 1 3.2536 -0.0505 -3.7525 31 1 4.9155 0.2682 -3.2000 32 1 7.6919 -3.8950 -3.3955 33 1 0.4501 -2.0783 1.3628 34 1 1.7964 -2.5839 0.3143 35 1 3.2603 -2.8203 2.2966 36 1 1.8047 -3.8322 2.4641 37 1 2.3144 -2.5747 4.5616 38 1 0.7424 -2.1046 3.8702 39 1 3.3810 -0.6064 3.5254 40 1 2.0084 -0.0955 4.5382 41 1 1.9956 1.0696 2.3422 42 1 0.5649 0.0279 2.5321 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044993114.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:13 Heat of formation + Delta-G solvation = -23.030331 kcal Electronic energy + Delta-G solvation = -18431.856374 eV Core-core repulsion = 15831.469540 eV Total energy + Delta-G solvation = -2600.386834 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.50421 -37.79405 -35.74860 -34.11605 -31.89551 -31.34582 -30.22773 -27.27071 -26.09951 -24.94412 -23.88859 -21.66050 -21.46334 -20.05067 -18.80490 -17.47740 -17.06048 -16.10221 -15.64915 -15.60831 -15.37037 -15.11562 -14.97470 -14.53274 -14.21219 -14.06821 -13.69579 -13.56915 -13.21520 -12.95154 -12.90562 -12.74093 -12.61347 -12.21030 -12.10939 -11.95203 -11.61732 -11.56685 -11.39316 -11.20314 -11.10659 -10.99468 -10.75400 -9.10676 -8.94379 -8.30223 -6.34185 1.30008 1.34132 1.45141 2.31086 2.99735 3.05181 3.55193 3.92107 3.96710 4.04583 4.15501 4.29341 4.39603 4.41664 4.46488 4.53656 4.59096 4.68162 4.70558 4.74509 4.81312 4.86774 4.89231 4.93195 4.99694 5.02051 5.06420 5.13846 5.16259 5.27185 5.31880 5.37762 5.53082 5.54002 5.66468 6.03718 6.29218 6.33359 6.60367 6.72833 6.95187 7.32638 8.86494 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028893 B = 0.006419 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.865198 B = 4361.052217 C = 4904.866263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.090 3.910 3 H 0.084 0.916 4 C 0.067 3.933 5 N -0.673 5.673 6 C 0.185 3.815 7 H -0.011 1.011 8 C -0.132 4.132 9 C -0.521 4.521 10 H 0.036 0.964 11 C 0.013 3.987 12 N -0.947 5.947 13 Si 0.955 3.045 14 H -0.265 1.265 15 H -0.297 1.297 16 H -0.253 1.253 17 N -0.542 5.542 18 C 0.055 3.945 19 C -0.119 4.119 20 C -0.113 4.113 21 C -0.116 4.116 22 C 0.058 3.942 23 H 0.053 0.947 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.014 0.986 27 H 0.071 0.929 28 H 0.343 0.657 29 H 0.029 0.971 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.266 0.734 33 H 0.044 0.956 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.053 0.947 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.728 5.839 9.068 19.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.019 4.019 3 H 0.103 0.897 4 C -0.063 4.063 5 N -0.305 5.305 6 C 0.075 3.925 7 H 0.006 0.994 8 C -0.190 4.190 9 C -0.559 4.559 10 H 0.054 0.946 11 C -0.184 4.184 12 N -0.587 5.587 13 Si 0.782 3.218 14 H -0.191 1.191 15 H -0.225 1.225 16 H -0.178 1.178 17 N -0.267 5.267 18 C -0.072 4.072 19 C -0.157 4.157 20 C -0.150 4.150 21 C -0.154 4.154 22 C -0.069 4.069 23 H 0.072 0.928 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.032 0.968 27 H 0.089 0.911 28 H 0.162 0.838 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -15.965 6.360 8.735 19.278 hybrid contribution -0.613 -1.317 -0.664 1.598 sum -16.578 5.042 8.071 19.115 Atomic orbital electron populations 1.22343 0.95792 1.02174 1.03112 1.21667 0.93171 0.98157 0.88875 0.89750 1.22092 0.88687 0.97760 0.97793 1.60393 1.08583 1.56744 1.04805 1.19375 0.92892 0.90473 0.89768 0.99371 1.21965 1.00416 0.99483 0.97093 1.21404 1.04453 1.31977 0.98096 0.94559 1.25808 0.94870 0.94665 1.03085 1.70048 1.15725 1.36889 1.36057 0.85766 0.79818 0.76479 0.79760 1.19109 1.22465 1.17753 1.61974 1.60319 1.02043 1.02387 1.22053 0.97250 0.89432 0.98504 1.21591 1.00480 0.98864 0.94800 1.21523 1.01173 0.95600 0.96748 1.21588 1.00488 0.95905 0.97385 1.22089 0.98049 0.97553 0.89209 0.92780 0.91119 0.91266 0.96836 0.91088 0.83788 0.95213 0.92528 0.93118 0.92495 0.93793 0.93064 0.93321 0.91066 0.91277 0.91355 0.92817 0.89819 0.90849 0.93881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.56 8.50 71.98 0.61 -2.95 16 2 C 0.09 2.39 2.66 44.91 0.12 2.51 16 3 H 0.08 2.31 8.08 -2.39 -0.02 2.29 16 4 C 0.07 2.21 4.55 86.30 0.39 2.60 16 5 N -0.67 -28.47 6.29 -495.44 -3.12 -31.59 16 6 C 0.18 8.98 2.19 44.17 0.10 9.07 16 7 H -0.01 -0.56 6.85 -2.39 -0.02 -0.57 16 8 C -0.13 -5.83 8.90 71.98 0.64 -5.19 16 9 C -0.52 -30.71 9.17 25.60 0.23 -30.47 16 10 H 0.04 2.38 7.86 -2.91 -0.02 2.36 16 11 C 0.01 0.78 5.45 84.65 0.46 1.25 16 12 N -0.95 -60.28 13.96 21.45 0.30 -59.98 16 13 Si 0.95 46.19 24.38 68.60 1.67 47.86 16 14 H -0.27 -12.20 6.87 99.48 0.68 -11.51 16 15 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 16 H -0.25 -11.49 6.53 99.48 0.65 -10.85 16 17 N -0.54 -14.73 3.72 -871.13 -3.24 -17.97 16 18 C 0.06 1.48 4.58 86.33 0.40 1.87 16 19 C -0.12 -2.99 6.09 30.65 0.19 -2.81 16 20 C -0.11 -2.24 6.00 30.67 0.18 -2.06 16 21 C -0.12 -2.36 6.09 30.64 0.19 -2.18 16 22 C 0.06 1.27 5.02 86.33 0.43 1.70 16 23 H 0.05 1.13 6.52 -2.39 -0.02 1.11 16 24 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.07 1.22 6.65 -2.38 -0.02 1.21 16 26 H 0.01 0.47 6.48 -2.39 -0.02 0.45 16 27 H 0.07 2.24 7.44 -2.39 -0.02 2.22 16 28 H 0.34 15.51 7.32 -89.70 -0.66 14.85 16 29 H 0.03 1.33 3.28 -2.39 -0.01 1.32 16 30 H 0.06 2.11 7.45 -2.38 -0.02 2.09 16 31 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 33 H 0.04 1.03 6.62 -2.39 -0.02 1.02 16 34 H 0.05 1.63 6.14 -2.39 -0.01 1.61 16 35 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.07 1.57 8.08 -2.39 -0.02 1.55 16 42 H 0.04 0.82 6.73 -2.39 -0.02 0.80 16 Total: -1.00 -64.98 307.01 -0.20 -65.18 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: 0.24 Total: 23.13 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: 3.94 Total: -26.64 kcal Atomic # 7 Polarization: -103.48 SS G_CDS: -6.06 Total: -109.54 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.67 Total: 47.86 kcal Total: -64.98 -0.20 -65.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044993114.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.151 kcal (2) G-P(sol) polarization free energy of solvation -64.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds