Wall clock time and date at job start Mon Mar 30 2020 03:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47108 * 2 1 4 4 C 1.50702 * 109.47069 * 239.99867 * 2 1 3 5 5 H 1.07995 * 119.99816 * 240.00461 * 4 2 1 6 6 C 1.37873 * 119.99575 * 60.00050 * 4 2 1 7 7 N 1.31514 * 120.00612 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99677 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47105 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47454 * 120.00095 * 8 6 4 11 11 H 1.48500 * 109.47101 * 239.99925 * 8 6 4 12 12 N 1.46900 * 109.47082 * 120.00028 * 2 1 3 13 13 C 1.46904 * 110.99969 * 275.00144 * 12 2 1 14 14 C 1.53001 * 109.46785 * 174.91979 * 13 12 2 15 15 H 1.08998 * 109.46574 * 185.95149 * 14 13 12 16 16 C 1.52999 * 109.47440 * 65.95127 * 14 13 12 17 17 N 1.46897 * 109.47221 * 305.94649 * 14 13 12 18 18 C 1.46845 * 111.00152 * 303.06715 * 17 14 13 19 19 C 1.53043 * 109.52103 * 174.15766 * 18 17 14 20 20 C 1.53117 * 109.27925 * 59.17957 * 19 18 17 21 21 C 1.53117 * 109.15911 * 302.34359 * 20 19 18 22 22 C 1.46843 * 111.00035 * 178.85236 * 17 14 13 23 23 H 1.09006 * 109.47196 * 299.99971 * 1 2 3 24 24 H 1.08997 * 109.47136 * 60.00169 * 1 2 3 25 25 H 1.09002 * 109.47108 * 180.02562 * 1 2 3 26 26 H 0.96995 * 120.00371 * 179.97438 * 7 6 4 27 27 H 1.00897 * 111.00119 * 151.04196 * 12 2 1 28 28 H 1.09001 * 109.46823 * 294.91579 * 13 12 2 29 29 H 1.08996 * 109.47299 * 54.91789 * 13 12 2 30 30 H 1.09001 * 109.46979 * 60.00114 * 16 14 13 31 31 H 1.08993 * 109.47086 * 179.97438 * 16 14 13 32 32 H 1.08990 * 109.47042 * 300.00206 * 16 14 13 33 33 H 1.08994 * 109.46347 * 294.17146 * 18 17 14 34 34 H 1.08998 * 109.46578 * 54.14236 * 18 17 14 35 35 H 1.08999 * 109.50599 * 299.23370 * 19 18 17 36 36 H 1.09003 * 109.53229 * 179.13976 * 19 18 17 37 37 H 1.09000 * 109.52173 * 182.43812 * 20 19 18 38 38 H 1.09004 * 109.57544 * 62.27752 * 20 19 18 39 39 H 1.08999 * 109.50759 * 297.71135 * 21 20 19 40 40 H 1.09006 * 109.53528 * 177.61200 * 21 20 19 41 41 H 1.08995 * 109.46590 * 305.85744 * 22 17 14 42 42 H 1.08999 * 109.46258 * 65.83645 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 3.1464 -2.2871 -3.6037 10 1 1.1660 -1.5867 -4.8161 11 1 3.1465 -0.1874 -4.8165 12 7 2.0197 -0.6925 1.1994 13 6 2.0824 0.2226 2.3469 14 6 2.4737 -0.5597 3.6022 15 1 2.4176 0.0960 4.4711 16 6 3.9027 -1.0850 3.4511 17 7 1.5528 -1.6901 3.7816 18 6 0.1610 -1.2281 3.8577 19 6 -0.7774 -2.4364 3.8976 20 6 -0.4391 -3.2992 5.1165 21 6 1.0290 -3.7270 5.0374 22 6 1.9151 -2.4814 4.9644 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7095 1.1618 -3.4843 27 1 2.9173 -1.1206 1.0287 28 1 2.8259 0.9962 2.1545 29 1 1.1069 0.6853 2.4965 30 1 4.5860 -0.2463 3.3181 31 1 4.1815 -1.6420 4.3456 32 1 3.9588 -1.7406 2.5823 33 1 0.0248 -0.6325 4.7603 34 1 -0.0679 -0.6192 2.9830 35 1 -0.6518 -3.0250 2.9889 36 1 -1.8097 -2.0938 3.9695 37 1 -1.0763 -4.1835 5.1249 38 1 -0.6023 -2.7239 6.0278 39 1 1.1831 -4.3360 4.1466 40 1 1.2880 -4.3064 5.9237 41 1 2.9601 -2.7828 4.8937 42 1 1.7706 -1.8799 5.8619 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044993120.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:18 Heat of formation + Delta-G solvation = -7.448128 kcal Electronic energy + Delta-G solvation = -18456.700586 eV Core-core repulsion = 15856.989447 eV Total energy + Delta-G solvation = -2599.711139 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.08814 -36.12191 -34.14383 -32.03798 -30.71560 -29.89307 -27.85030 -25.54597 -24.76534 -23.57494 -22.32533 -20.04827 -19.71024 -19.02585 -16.58754 -16.06634 -15.08492 -14.64072 -14.37723 -14.06207 -13.91219 -13.45574 -13.32486 -12.94187 -12.85174 -12.49797 -12.31563 -11.65899 -11.46971 -11.33866 -11.01989 -10.95811 -10.89315 -10.64412 -10.60323 -10.48821 -10.21405 -10.08542 -10.00598 -9.93540 -9.61083 -8.72856 -8.40863 -7.80008 -7.00669 -5.96419 -4.01766 3.32309 3.40119 3.44809 4.17872 4.45823 4.97851 5.02559 5.08109 5.30015 5.33837 5.37969 5.47730 5.49152 5.65112 5.69840 5.77542 5.78925 5.86455 5.99250 6.06490 6.14721 6.18196 6.24278 6.26524 6.33261 6.35425 6.56523 6.57708 6.67210 6.96626 7.22832 7.33512 7.51455 7.57606 7.65082 7.86801 8.00575 8.37186 8.54958 8.82688 9.12000 9.64106 11.10015 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.029799 B = 0.005908 C = 0.005665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.401831 B = 4737.887627 C = 4941.558380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.210 3.790 3 H -0.005 1.005 4 C -0.511 4.511 5 H 0.060 0.940 6 C 0.060 3.940 7 N -0.892 5.892 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.286 1.286 12 N -0.666 5.666 13 C 0.066 3.934 14 C 0.087 3.913 15 H 0.028 0.972 16 C -0.146 4.146 17 N -0.505 5.505 18 C 0.060 3.940 19 C -0.114 4.114 20 C -0.119 4.119 21 C -0.115 4.115 22 C 0.051 3.949 23 H 0.000 1.000 24 H 0.077 0.923 25 H 0.031 0.969 26 H 0.259 0.741 27 H 0.329 0.671 28 H 0.019 0.981 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.015 0.985 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.051 0.949 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.074 0.926 42 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.533 -4.686 14.758 15.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.102 3.898 3 H 0.012 0.988 4 C -0.550 4.550 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.531 5.531 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.297 5.297 13 C -0.065 4.065 14 C -0.022 4.022 15 H 0.046 0.954 16 C -0.204 4.204 17 N -0.230 5.230 18 C -0.067 4.067 19 C -0.152 4.152 20 C -0.157 4.157 21 C -0.152 4.152 22 C -0.077 4.077 23 H 0.019 0.981 24 H 0.096 0.904 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.147 0.853 28 H 0.037 0.963 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.033 0.967 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.092 0.908 42 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -0.125 -5.113 14.366 15.250 hybrid contribution 0.937 0.737 -0.361 1.245 sum 0.812 -4.376 14.006 14.696 Atomic orbital electron populations 1.21678 0.98053 0.99202 0.98869 1.19094 0.92536 0.92078 0.86078 0.98754 1.21317 1.30977 1.12251 0.90472 0.92231 1.24919 0.95170 0.95025 0.99001 1.69911 1.36993 1.23043 1.23170 0.86501 0.78578 0.79630 0.83030 1.19772 1.21058 1.21233 1.60581 1.32188 1.32119 1.04862 1.21945 0.99335 0.93568 0.91652 1.21647 0.92717 0.91164 0.96648 0.95395 1.21885 0.94988 1.01231 1.02294 1.61748 1.01790 1.22137 1.37307 1.22067 0.88078 0.96410 1.00193 1.21545 0.97891 0.97042 0.98746 1.21570 0.96493 0.99419 0.98208 1.21553 0.94749 0.97277 1.01653 1.22151 0.99580 0.94870 0.91104 0.98095 0.90442 0.94939 0.93131 0.85267 0.96332 0.92018 0.92784 0.93165 0.90938 0.96686 0.89206 0.90558 0.92273 0.92385 0.92982 0.90934 0.92422 0.90813 0.96207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.01 9.19 37.16 0.34 -2.67 16 2 C 0.21 5.36 2.60 -68.86 -0.18 5.18 16 3 H -0.01 -0.14 7.86 -51.93 -0.41 -0.55 16 4 C -0.51 -14.20 8.59 -34.44 -0.30 -14.49 16 5 H 0.06 1.64 7.62 -52.49 -0.40 1.24 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -25.84 11.32 55.43 0.63 -25.21 16 8 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 9 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 12 N -0.67 -14.22 5.96 -107.95 -0.64 -14.86 16 13 C 0.07 1.20 4.47 -3.82 -0.02 1.18 16 14 C 0.09 1.32 2.44 -67.71 -0.17 1.16 16 15 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 16 C -0.15 -2.01 8.72 37.16 0.32 -1.68 16 17 N -0.50 -7.68 4.23 -226.70 -0.96 -8.64 16 18 C 0.06 0.91 5.16 -3.83 -0.02 0.89 16 19 C -0.11 -1.56 6.09 -26.65 -0.16 -1.72 16 20 C -0.12 -1.38 6.00 -26.61 -0.16 -1.54 16 21 C -0.11 -1.34 6.09 -26.65 -0.16 -1.51 16 22 C 0.05 0.65 5.20 -3.83 -0.02 0.63 16 23 H 0.00 0.00 7.38 -51.93 -0.38 -0.38 16 24 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 25 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.33 7.04 6.70 -39.29 -0.26 6.78 16 28 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 1.17 5.77 -51.93 -0.30 0.87 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.60 6.26 -51.93 -0.33 0.28 16 32 H 0.07 1.10 6.82 -51.93 -0.35 0.74 16 33 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 34 H 0.09 1.58 6.05 -51.93 -0.31 1.26 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.90 5.97 -51.93 -0.31 0.59 16 42 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 314.75 15.07 4.74 4.74 Total: -1.00 -28.24 314.75 -9.44 -37.68 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -7.58 Total: 2.72 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -0.61 Total: -12.98 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: -0.97 Total: -48.71 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.24 -9.44 -37.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044993120.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.235 kcal (2) G-P(sol) polarization free energy of solvation -28.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds