Wall clock time and date at job start Mon Mar 30 2020 03:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47108 * 2 1 4 4 C 1.50702 * 109.47069 * 239.99867 * 2 1 3 5 5 H 1.07995 * 119.99816 * 240.00461 * 4 2 1 6 6 C 1.37873 * 119.99575 * 60.00050 * 4 2 1 7 7 N 1.31514 * 120.00612 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99677 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47105 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47454 * 120.00095 * 8 6 4 11 11 H 1.48500 * 109.47101 * 239.99925 * 8 6 4 12 12 N 1.46900 * 109.47082 * 120.00028 * 2 1 3 13 13 C 1.46904 * 110.99969 * 275.00144 * 12 2 1 14 14 C 1.53001 * 109.46785 * 174.91979 * 13 12 2 15 15 H 1.08998 * 109.46574 * 185.95149 * 14 13 12 16 16 C 1.52999 * 109.47440 * 65.95127 * 14 13 12 17 17 N 1.46897 * 109.47221 * 305.94649 * 14 13 12 18 18 C 1.46845 * 111.00152 * 303.06715 * 17 14 13 19 19 C 1.53043 * 109.52103 * 174.15766 * 18 17 14 20 20 C 1.53117 * 109.27925 * 59.17957 * 19 18 17 21 21 C 1.53117 * 109.15911 * 302.34359 * 20 19 18 22 22 C 1.46843 * 111.00035 * 178.85236 * 17 14 13 23 23 H 1.09006 * 109.47196 * 299.99971 * 1 2 3 24 24 H 1.08997 * 109.47136 * 60.00169 * 1 2 3 25 25 H 1.09002 * 109.47108 * 180.02562 * 1 2 3 26 26 H 0.96995 * 120.00371 * 179.97438 * 7 6 4 27 27 H 1.00897 * 111.00119 * 151.04196 * 12 2 1 28 28 H 1.09001 * 109.46823 * 294.91579 * 13 12 2 29 29 H 1.08996 * 109.47299 * 54.91789 * 13 12 2 30 30 H 1.09001 * 109.46979 * 60.00114 * 16 14 13 31 31 H 1.08993 * 109.47086 * 179.97438 * 16 14 13 32 32 H 1.08990 * 109.47042 * 300.00206 * 16 14 13 33 33 H 1.08994 * 109.46347 * 294.17146 * 18 17 14 34 34 H 1.08998 * 109.46578 * 54.14236 * 18 17 14 35 35 H 1.08999 * 109.50599 * 299.23370 * 19 18 17 36 36 H 1.09003 * 109.53229 * 179.13976 * 19 18 17 37 37 H 1.09000 * 109.52173 * 182.43812 * 20 19 18 38 38 H 1.09004 * 109.57544 * 62.27752 * 20 19 18 39 39 H 1.08999 * 109.50759 * 297.71135 * 21 20 19 40 40 H 1.09006 * 109.53528 * 177.61200 * 21 20 19 41 41 H 1.08995 * 109.46590 * 305.85744 * 22 17 14 42 42 H 1.08999 * 109.46258 * 65.83645 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 3.1464 -2.2871 -3.6037 10 1 1.1660 -1.5867 -4.8161 11 1 3.1465 -0.1874 -4.8165 12 7 2.0197 -0.6925 1.1994 13 6 2.0824 0.2226 2.3469 14 6 2.4737 -0.5597 3.6022 15 1 2.4176 0.0960 4.4711 16 6 3.9027 -1.0850 3.4511 17 7 1.5528 -1.6901 3.7816 18 6 0.1610 -1.2281 3.8577 19 6 -0.7774 -2.4364 3.8976 20 6 -0.4391 -3.2992 5.1165 21 6 1.0290 -3.7270 5.0374 22 6 1.9151 -2.4814 4.9644 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7095 1.1618 -3.4843 27 1 2.9173 -1.1206 1.0287 28 1 2.8259 0.9962 2.1545 29 1 1.1069 0.6853 2.4965 30 1 4.5860 -0.2463 3.3181 31 1 4.1815 -1.6420 4.3456 32 1 3.9588 -1.7406 2.5823 33 1 0.0248 -0.6325 4.7603 34 1 -0.0679 -0.6192 2.9830 35 1 -0.6518 -3.0250 2.9889 36 1 -1.8097 -2.0938 3.9695 37 1 -1.0763 -4.1835 5.1249 38 1 -0.6023 -2.7239 6.0278 39 1 1.1831 -4.3360 4.1466 40 1 1.2880 -4.3064 5.9237 41 1 2.9601 -2.7828 4.8937 42 1 1.7706 -1.8799 5.8619 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044993120.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:18 Heat of formation + Delta-G solvation = -25.267444 kcal Electronic energy + Delta-G solvation = -18457.473289 eV Core-core repulsion = 15856.989447 eV Total energy + Delta-G solvation = -2600.483842 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.25804 -37.72623 -35.69813 -33.86887 -31.78171 -31.31330 -29.48338 -27.45429 -26.40616 -24.76120 -23.42606 -21.89359 -20.93245 -20.30131 -18.52805 -17.39812 -16.94054 -15.97546 -15.81121 -15.43343 -15.10598 -14.99141 -14.58718 -14.26490 -14.14111 -14.08483 -13.72563 -13.33593 -12.87062 -12.83616 -12.63546 -12.51053 -12.29427 -12.20498 -12.10337 -12.00744 -11.96171 -11.67629 -11.46877 -11.05059 -10.91764 -10.81160 -10.55100 -8.95253 -8.81212 -8.10789 -6.24194 1.41517 1.43365 1.55407 2.43202 3.04072 3.17723 3.78037 3.93919 4.00768 4.06445 4.18513 4.22119 4.43113 4.51117 4.57691 4.64404 4.72694 4.79362 4.82686 4.87819 4.92715 4.98426 5.02066 5.11168 5.13949 5.17001 5.18480 5.28052 5.32477 5.40104 5.46965 5.51622 5.59706 5.71097 5.91256 6.26658 6.37926 6.47005 6.58268 6.88700 7.11116 7.46519 8.95099 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.029799 B = 0.005908 C = 0.005665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.401831 B = 4737.887627 C = 4941.558380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.215 3.785 3 H -0.039 1.039 4 C -0.531 4.531 5 H 0.057 0.943 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.962 3.038 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.281 1.281 12 N -0.658 5.658 13 C 0.067 3.933 14 C 0.093 3.907 15 H 0.043 0.957 16 C -0.141 4.141 17 N -0.523 5.523 18 C 0.062 3.938 19 C -0.113 4.113 20 C -0.114 4.114 21 C -0.112 4.112 22 C 0.051 3.949 23 H 0.016 0.984 24 H 0.052 0.948 25 H 0.025 0.975 26 H 0.261 0.739 27 H 0.330 0.670 28 H 0.015 0.985 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.025 0.975 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.142 -5.878 16.116 17.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.107 3.893 3 H -0.021 1.021 4 C -0.569 4.569 5 H 0.075 0.925 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.787 3.213 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.206 1.206 12 N -0.290 5.290 13 C -0.063 4.063 14 C -0.016 4.016 15 H 0.060 0.940 16 C -0.198 4.198 17 N -0.248 5.248 18 C -0.066 4.066 19 C -0.151 4.151 20 C -0.152 4.152 21 C -0.150 4.150 22 C -0.077 4.077 23 H 0.035 0.965 24 H 0.071 0.929 25 H 0.044 0.956 26 H 0.070 0.930 27 H 0.148 0.852 28 H 0.033 0.967 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.043 0.957 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 0.490 -6.312 15.747 16.972 hybrid contribution 0.732 1.143 -0.737 1.544 sum 1.221 -5.169 15.010 15.922 Atomic orbital electron populations 1.21457 0.97904 0.98468 0.98401 1.18898 0.92605 0.90382 0.87439 1.02126 1.21611 1.31253 1.12391 0.91652 0.92464 1.25730 0.95266 0.95701 1.02028 1.70038 1.37773 1.24207 1.23960 0.85454 0.78084 0.78605 0.79134 1.19101 1.20670 1.20643 1.60496 1.32151 1.32241 1.04082 1.21982 0.98824 0.93500 0.91973 1.21559 0.93577 0.91345 0.95106 0.93973 1.21836 0.94040 1.01365 1.02584 1.61735 1.01653 1.22236 1.39190 1.21979 0.88647 0.96787 0.99149 1.21518 0.98126 0.96554 0.98885 1.21541 0.96713 0.99590 0.97319 1.21557 0.94589 0.96796 1.02080 1.22225 1.00255 0.94919 0.90259 0.96482 0.92886 0.95589 0.92966 0.85246 0.96726 0.92988 0.92092 0.90923 0.92645 0.95685 0.92310 0.92983 0.91405 0.91106 0.91829 0.92476 0.89951 0.90067 0.95264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.37 9.19 71.98 0.66 -4.71 16 2 C 0.22 11.31 2.60 44.17 0.11 11.42 16 3 H -0.04 -2.26 7.86 -2.39 -0.02 -2.28 16 4 C -0.53 -29.88 8.59 25.60 0.22 -29.66 16 5 H 0.06 3.18 7.62 -2.91 -0.02 3.16 16 6 C 0.01 0.65 5.30 84.65 0.45 1.09 16 7 N -0.92 -54.16 11.32 21.45 0.24 -53.91 16 8 Si 0.96 44.37 29.54 68.60 2.03 46.40 16 9 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 N -0.66 -28.57 5.96 -495.43 -2.95 -31.52 16 13 C 0.07 2.48 4.47 86.30 0.39 2.86 16 14 C 0.09 2.70 2.44 44.92 0.11 2.81 16 15 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 16 C -0.14 -3.60 8.72 71.98 0.63 -2.98 16 17 N -0.52 -15.22 4.23 -871.14 -3.68 -18.90 16 18 C 0.06 1.84 5.16 86.33 0.45 2.29 16 19 C -0.11 -2.98 6.09 30.65 0.19 -2.79 16 20 C -0.11 -2.36 6.00 30.67 0.18 -2.18 16 21 C -0.11 -2.34 6.09 30.65 0.19 -2.16 16 22 C 0.05 1.17 5.20 86.33 0.45 1.62 16 23 H 0.02 0.77 7.38 -2.38 -0.02 0.76 16 24 H 0.05 2.99 6.07 -2.39 -0.01 2.98 16 25 H 0.02 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 27 H 0.33 14.25 6.70 -89.70 -0.60 13.65 16 28 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.05 2.00 5.77 -2.39 -0.01 1.98 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 31 H 0.07 1.53 6.26 -2.39 -0.01 1.52 16 32 H 0.05 1.61 6.82 -2.39 -0.02 1.60 16 33 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 2.09 6.05 -2.39 -0.01 2.07 16 35 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.08 1.74 5.97 -2.39 -0.01 1.73 16 42 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -60.60 314.75 0.02 -60.58 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.37 Total: 19.74 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: 4.02 Total: -22.38 kcal Atomic # 7 Polarization: -97.94 SS G_CDS: -6.39 Total: -104.34 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -60.60 0.02 -60.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044993120.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.310 kcal (2) G-P(sol) polarization free energy of solvation -60.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds