Wall clock time and date at job start Mon Mar 30 2020 03:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47053 * 2 1 4 4 C 1.52999 * 109.46786 * 119.99510 * 2 1 3 5 5 N 1.46897 * 109.47184 * 66.05615 * 4 2 1 6 6 C 1.46899 * 111.00435 * 183.63438 * 5 4 2 7 7 C 1.53003 * 109.47581 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.46971 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00172 * 0.02562 * 8 7 6 10 10 C 1.37875 * 119.99611 * 179.97438 * 8 7 6 11 11 N 1.31522 * 120.00004 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00223 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47386 * 89.99769 * 12 10 8 14 14 H 1.48503 * 109.47607 * 210.00500 * 12 10 8 15 15 H 1.48509 * 109.47085 * 330.00393 * 12 10 8 16 16 N 1.46900 * 109.47240 * 239.99575 * 2 1 3 17 17 C 1.46846 * 110.99592 * 62.32851 * 16 2 1 18 18 C 1.53045 * 109.51858 * 185.83697 * 17 16 2 19 19 C 1.53117 * 109.27903 * 300.82490 * 18 17 16 20 20 C 1.53113 * 109.21428 * 57.62072 * 19 18 17 21 21 C 1.46852 * 110.99788 * 186.53885 * 16 2 1 22 22 H 1.08998 * 109.47247 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47089 * 300.00212 * 1 2 3 24 24 H 1.08998 * 109.46955 * 60.00185 * 1 2 3 25 25 H 1.09008 * 109.47092 * 186.05546 * 4 2 1 26 26 H 1.09003 * 109.47470 * 306.05675 * 4 2 1 27 27 H 1.00898 * 111.00245 * 307.59187 * 5 4 2 28 28 H 1.09001 * 109.47536 * 300.00456 * 6 5 4 29 29 H 1.09005 * 109.47028 * 59.99801 * 6 5 4 30 30 H 1.09002 * 109.46680 * 300.00300 * 7 6 5 31 31 H 1.08999 * 109.46488 * 59.99968 * 7 6 5 32 32 H 0.97000 * 119.99667 * 179.97438 * 11 10 8 33 33 H 1.09000 * 109.46340 * 65.82987 * 17 16 2 34 34 H 1.08994 * 109.45698 * 305.84522 * 17 16 2 35 35 H 1.09003 * 109.50020 * 180.88079 * 18 17 16 36 36 H 1.09004 * 109.49781 * 60.76586 * 18 17 16 37 37 H 1.08996 * 109.52087 * 177.56472 * 19 18 17 38 38 H 1.09004 * 109.52328 * 297.68225 * 19 18 17 39 39 H 1.08999 * 109.50164 * 62.32118 * 20 19 18 40 40 H 1.09003 * 109.50012 * 182.43816 * 20 19 18 41 41 H 1.09002 * 109.46151 * 294.17614 * 21 16 2 42 42 H 1.08993 * 109.46104 * 54.15694 * 21 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6732 -2.1419 1.1786 6 6 2.0715 -2.8500 2.4025 7 6 1.6744 -4.3234 2.2914 8 6 2.0836 -5.0499 3.5467 9 1 2.5770 -4.5142 4.3442 10 6 1.8270 -6.3982 3.6776 11 7 1.2256 -7.0505 2.7066 12 14 2.3335 -7.2987 5.2338 13 1 1.2245 -7.2451 6.2200 14 1 2.6391 -8.7152 4.9090 15 1 3.5397 -6.6517 5.8098 16 7 2.0197 -0.6926 -1.1994 17 6 1.5949 0.0047 -2.4199 18 6 1.9962 -0.8194 -3.6456 19 6 3.5149 -1.0139 -3.6488 20 6 3.9381 -1.6975 -2.3457 21 6 3.4793 -0.8488 -1.1577 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 3.1246 -0.6282 1.3052 26 1 1.5908 -0.2737 2.1360 27 1 0.6859 -2.2521 1.0021 28 1 3.1511 -2.7738 2.5315 29 1 1.5706 -2.4020 3.2608 30 1 0.5948 -4.4000 2.1623 31 1 2.1757 -4.7710 1.4332 32 1 1.0454 -7.9991 2.7985 33 1 2.0757 0.9818 -2.4661 34 1 0.5125 0.1326 -2.4069 35 1 1.6946 -0.2941 -4.5518 36 1 1.5048 -1.7916 -3.6071 37 1 3.8005 -1.6367 -4.4964 38 1 4.0062 -0.0441 -3.7276 39 1 3.4782 -2.6840 -2.2863 40 1 5.0232 -1.7993 -2.3239 41 1 3.9512 0.1324 -1.2097 42 1 3.7655 -1.3407 -0.2281 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044993606.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:40 Heat of formation + Delta-G solvation = -14.848072 kcal Electronic energy + Delta-G solvation = -17880.409529 eV Core-core repulsion = 15280.377505 eV Total energy + Delta-G solvation = -2600.032024 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.28836 -36.28638 -34.08390 -32.55550 -30.86369 -30.26004 -28.64256 -25.83224 -24.07416 -23.32533 -22.46226 -20.48600 -19.94478 -19.36162 -16.57338 -16.20493 -15.28123 -14.81337 -14.56657 -14.36409 -14.19594 -13.59039 -13.51438 -13.27773 -13.07377 -12.63753 -12.46508 -12.07293 -11.68728 -11.66541 -11.27496 -11.07772 -11.03155 -10.90787 -10.82438 -10.61940 -10.44300 -10.17989 -9.98837 -9.89663 -9.28161 -9.07762 -8.29423 -8.02244 -7.58139 -5.94183 -3.96440 3.35089 3.41188 3.44634 3.97381 4.48782 4.81740 4.88861 4.91789 5.04642 5.12011 5.14819 5.35213 5.41561 5.47402 5.51087 5.55409 5.64951 5.74710 5.80480 5.85256 5.91337 5.97616 6.03530 6.07127 6.08762 6.23816 6.33887 6.39087 6.43313 6.52102 6.54000 7.08008 7.31272 7.37470 7.63244 7.83341 7.93371 8.11064 8.20223 8.51325 9.11307 9.66921 11.17204 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.031223 B = 0.004695 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.565767 B = 5962.654826 C = 6355.704280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.084 3.916 3 H 0.034 0.966 4 C 0.062 3.938 5 N -0.671 5.671 6 C 0.065 3.935 7 C 0.027 3.973 8 C -0.520 4.520 9 H 0.053 0.947 10 C 0.058 3.942 11 N -0.893 5.893 12 Si 0.891 3.109 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.274 1.274 16 N -0.510 5.510 17 C 0.052 3.948 18 C -0.115 4.115 19 C -0.120 4.120 20 C -0.116 4.116 21 C 0.060 3.940 22 H 0.071 0.929 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.025 0.975 27 H 0.337 0.663 28 H 0.054 0.946 29 H 0.010 0.990 30 H 0.012 0.988 31 H 0.026 0.974 32 H 0.260 0.740 33 H 0.022 0.978 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.017 0.983 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.475 15.616 -10.518 18.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.024 4.024 3 H 0.052 0.948 4 C -0.068 4.068 5 N -0.303 5.303 6 C -0.063 4.063 7 C -0.010 4.010 8 C -0.559 4.559 9 H 0.071 0.929 10 C -0.143 4.143 11 N -0.532 5.532 12 Si 0.719 3.281 13 H -0.208 1.208 14 H -0.212 1.212 15 H -0.199 1.199 16 N -0.236 5.236 17 C -0.076 4.076 18 C -0.153 4.153 19 C -0.158 4.158 20 C -0.154 4.154 21 C -0.067 4.067 22 H 0.089 0.911 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.043 0.957 27 H 0.156 0.844 28 H 0.073 0.927 29 H 0.028 0.972 30 H 0.031 0.969 31 H 0.044 0.956 32 H 0.069 0.931 33 H 0.040 0.960 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.035 0.965 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.778 14.797 -10.912 18.471 hybrid contribution -0.037 0.623 1.519 1.642 sum 1.742 15.420 -9.393 18.139 Atomic orbital electron populations 1.21902 0.94630 1.03006 1.01088 1.21651 0.95577 0.94468 0.90748 0.94787 1.22012 1.00120 0.90364 0.94295 1.60495 1.23188 1.08407 1.38249 1.22160 0.99133 0.97237 0.87810 1.19033 0.96553 0.88222 0.97188 1.21200 1.38501 0.93928 1.02302 0.92895 1.24995 0.95321 0.97665 0.96356 1.69983 1.42137 1.09071 1.32053 0.86614 0.78869 0.79036 0.83571 1.20763 1.21220 1.19933 1.61780 1.11780 1.49640 1.00354 1.22146 1.00342 0.94546 0.90570 1.21562 0.96170 1.01126 0.96467 1.21573 0.96018 1.00099 0.98073 1.21559 0.99910 1.00362 0.93544 1.22077 0.87005 0.97487 1.00168 0.91052 0.92612 0.92735 0.91622 0.95718 0.84410 0.92747 0.97176 0.96948 0.95606 0.93060 0.95972 0.90807 0.92239 0.90833 0.92212 0.92938 0.90452 0.92081 0.96484 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.83 37.16 0.33 -1.41 16 2 C 0.08 1.08 2.44 -67.71 -0.17 0.91 16 3 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 4 C 0.06 0.92 4.62 -3.83 -0.02 0.91 16 5 N -0.67 -12.20 6.12 -113.77 -0.70 -12.90 16 6 C 0.06 1.40 5.62 -3.82 -0.02 1.38 16 7 C 0.03 0.73 5.23 -27.88 -0.15 0.59 16 8 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 9 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 10 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 11 N -0.89 -27.36 13.29 55.43 0.74 -26.62 16 12 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 16 N -0.51 -6.82 4.23 -226.68 -0.96 -7.78 16 17 C 0.05 0.59 5.26 -3.83 -0.02 0.57 16 18 C -0.12 -1.23 6.10 -26.65 -0.16 -1.40 16 19 C -0.12 -1.27 6.00 -26.61 -0.16 -1.43 16 20 C -0.12 -1.44 6.10 -26.65 -0.16 -1.60 16 21 C 0.06 0.80 5.08 -3.83 -0.02 0.78 16 22 H 0.07 0.94 6.63 -51.93 -0.34 0.59 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.57 6.33 -51.93 -0.33 0.24 16 25 H 0.07 0.98 6.57 -51.92 -0.34 0.64 16 26 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.34 6.12 6.92 -39.29 -0.27 5.85 16 28 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 0.80 6.08 -51.93 -0.32 0.48 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.09 1.36 5.91 -51.93 -0.31 1.06 16 LS Contribution 320.97 15.07 4.84 4.84 Total: -1.00 -29.97 320.97 -9.85 -39.82 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -7.79 Total: 0.16 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -0.96 Total: -14.47 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -0.92 Total: -47.30 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.97 -9.85 -39.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044993606.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.974 kcal (2) G-P(sol) polarization free energy of solvation -29.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds