Wall clock time and date at job start Mon Mar 30 2020 03:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47053 * 2 1 4 4 C 1.52999 * 109.46786 * 119.99510 * 2 1 3 5 5 N 1.46897 * 109.47184 * 66.05615 * 4 2 1 6 6 C 1.46899 * 111.00435 * 183.63438 * 5 4 2 7 7 C 1.53003 * 109.47581 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.46971 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00172 * 0.02562 * 8 7 6 10 10 C 1.37875 * 119.99611 * 179.97438 * 8 7 6 11 11 N 1.31522 * 120.00004 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00223 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47386 * 89.99769 * 12 10 8 14 14 H 1.48503 * 109.47607 * 210.00500 * 12 10 8 15 15 H 1.48509 * 109.47085 * 330.00393 * 12 10 8 16 16 N 1.46900 * 109.47240 * 239.99575 * 2 1 3 17 17 C 1.46846 * 110.99592 * 62.32851 * 16 2 1 18 18 C 1.53045 * 109.51858 * 185.83697 * 17 16 2 19 19 C 1.53117 * 109.27903 * 300.82490 * 18 17 16 20 20 C 1.53113 * 109.21428 * 57.62072 * 19 18 17 21 21 C 1.46852 * 110.99788 * 186.53885 * 16 2 1 22 22 H 1.08998 * 109.47247 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47089 * 300.00212 * 1 2 3 24 24 H 1.08998 * 109.46955 * 60.00185 * 1 2 3 25 25 H 1.09008 * 109.47092 * 186.05546 * 4 2 1 26 26 H 1.09003 * 109.47470 * 306.05675 * 4 2 1 27 27 H 1.00898 * 111.00245 * 307.59187 * 5 4 2 28 28 H 1.09001 * 109.47536 * 300.00456 * 6 5 4 29 29 H 1.09005 * 109.47028 * 59.99801 * 6 5 4 30 30 H 1.09002 * 109.46680 * 300.00300 * 7 6 5 31 31 H 1.08999 * 109.46488 * 59.99968 * 7 6 5 32 32 H 0.97000 * 119.99667 * 179.97438 * 11 10 8 33 33 H 1.09000 * 109.46340 * 65.82987 * 17 16 2 34 34 H 1.08994 * 109.45698 * 305.84522 * 17 16 2 35 35 H 1.09003 * 109.50020 * 180.88079 * 18 17 16 36 36 H 1.09004 * 109.49781 * 60.76586 * 18 17 16 37 37 H 1.08996 * 109.52087 * 177.56472 * 19 18 17 38 38 H 1.09004 * 109.52328 * 297.68225 * 19 18 17 39 39 H 1.08999 * 109.50164 * 62.32118 * 20 19 18 40 40 H 1.09003 * 109.50012 * 182.43816 * 20 19 18 41 41 H 1.09002 * 109.46151 * 294.17614 * 21 16 2 42 42 H 1.08993 * 109.46104 * 54.15694 * 21 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6732 -2.1419 1.1786 6 6 2.0715 -2.8500 2.4025 7 6 1.6744 -4.3234 2.2914 8 6 2.0836 -5.0499 3.5467 9 1 2.5770 -4.5142 4.3442 10 6 1.8270 -6.3982 3.6776 11 7 1.2256 -7.0505 2.7066 12 14 2.3335 -7.2987 5.2338 13 1 1.2245 -7.2451 6.2200 14 1 2.6391 -8.7152 4.9090 15 1 3.5397 -6.6517 5.8098 16 7 2.0197 -0.6926 -1.1994 17 6 1.5949 0.0047 -2.4199 18 6 1.9962 -0.8194 -3.6456 19 6 3.5149 -1.0139 -3.6488 20 6 3.9381 -1.6975 -2.3457 21 6 3.4793 -0.8488 -1.1577 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 3.1246 -0.6282 1.3052 26 1 1.5908 -0.2737 2.1360 27 1 0.6859 -2.2521 1.0021 28 1 3.1511 -2.7738 2.5315 29 1 1.5706 -2.4020 3.2608 30 1 0.5948 -4.4000 2.1623 31 1 2.1757 -4.7710 1.4332 32 1 1.0454 -7.9991 2.7985 33 1 2.0757 0.9818 -2.4661 34 1 0.5125 0.1326 -2.4069 35 1 1.6946 -0.2941 -4.5518 36 1 1.5048 -1.7916 -3.6071 37 1 3.8005 -1.6367 -4.4964 38 1 4.0062 -0.0441 -3.7276 39 1 3.4782 -2.6840 -2.2863 40 1 5.0232 -1.7993 -2.3239 41 1 3.9512 0.1324 -1.2097 42 1 3.7655 -1.3407 -0.2281 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044993606.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:39 Heat of formation + Delta-G solvation = -34.301168 kcal Electronic energy + Delta-G solvation = -17881.253078 eV Core-core repulsion = 15280.377505 eV Total energy + Delta-G solvation = -2600.875574 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.30617 -37.62812 -35.66771 -34.38028 -31.88381 -31.62702 -30.14546 -27.28659 -25.55103 -24.66275 -23.45164 -22.40316 -20.98687 -20.37723 -18.48019 -17.62280 -16.67789 -16.40334 -15.88743 -15.71541 -15.19127 -14.93616 -14.63114 -14.46292 -14.22680 -14.07960 -13.87016 -13.73913 -13.07232 -12.91202 -12.71413 -12.60133 -12.48677 -12.17196 -12.02985 -11.97444 -11.86763 -11.55160 -11.34617 -11.20320 -11.08556 -10.93707 -10.54910 -9.11026 -8.98102 -8.18582 -6.30323 1.40492 1.42421 1.53544 2.41579 2.98165 3.14559 3.53753 3.85202 3.97975 4.02760 4.14868 4.16940 4.38686 4.42932 4.53721 4.57212 4.63834 4.64418 4.71556 4.76310 4.83274 4.88706 4.93728 4.99338 5.10370 5.11387 5.13535 5.16086 5.30111 5.35429 5.44011 5.46887 5.56762 5.71446 5.81571 6.17740 6.27904 6.38589 6.46116 6.67215 6.87680 7.38925 8.93633 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.031223 B = 0.004695 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.565767 B = 5962.654826 C = 6355.704280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.088 3.912 3 H 0.051 0.949 4 C 0.064 3.936 5 N -0.675 5.675 6 C 0.085 3.915 7 C 0.036 3.964 8 C -0.545 4.545 9 H 0.059 0.941 10 C 0.001 3.999 11 N -0.932 5.932 12 Si 0.967 3.033 13 H -0.271 1.271 14 H -0.281 1.281 15 H -0.263 1.263 16 N -0.531 5.531 17 C 0.052 3.948 18 C -0.115 4.115 19 C -0.115 4.115 20 C -0.116 4.116 21 C 0.063 3.937 22 H 0.051 0.949 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.033 0.967 27 H 0.337 0.663 28 H 0.052 0.948 29 H 0.014 0.986 30 H -0.012 1.012 31 H -0.008 1.008 32 H 0.264 0.736 33 H 0.032 0.968 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.054 0.946 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.049 0.951 40 H 0.069 0.931 41 H 0.029 0.971 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.832 17.092 -10.290 20.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.020 4.020 3 H 0.069 0.931 4 C -0.066 4.066 5 N -0.307 5.307 6 C -0.045 4.045 7 C -0.001 4.001 8 C -0.583 4.583 9 H 0.077 0.923 10 C -0.197 4.197 11 N -0.572 5.572 12 Si 0.791 3.209 13 H -0.197 1.197 14 H -0.207 1.207 15 H -0.187 1.187 16 N -0.256 5.256 17 C -0.075 4.075 18 C -0.152 4.152 19 C -0.153 4.153 20 C -0.154 4.154 21 C -0.065 4.065 22 H 0.070 0.930 23 H 0.085 0.915 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.051 0.949 27 H 0.156 0.844 28 H 0.071 0.929 29 H 0.032 0.968 30 H 0.006 0.994 31 H 0.010 0.990 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.047 0.953 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.136 16.298 -10.690 19.608 hybrid contribution -0.158 0.181 1.393 1.414 sum 1.977 16.479 -9.297 19.024 Atomic orbital electron populations 1.21868 0.93751 1.02133 1.02443 1.21624 0.96207 0.94700 0.89502 0.93129 1.22073 1.00231 0.88238 0.96023 1.60393 1.23216 1.10733 1.36344 1.21765 0.98871 0.94406 0.89408 1.18866 0.94482 0.91474 0.95327 1.21625 1.38791 0.94764 1.03124 0.92261 1.25980 0.95025 0.98640 1.00062 1.70124 1.43115 1.09570 1.34403 0.85421 0.78968 0.77505 0.78967 1.19671 1.20689 1.18746 1.61771 1.11752 1.50745 1.01372 1.22194 1.00796 0.94792 0.89723 1.21569 0.96030 1.00391 0.97242 1.21545 0.96076 1.00608 0.97055 1.21542 1.00230 0.99009 0.94610 1.21986 0.87367 0.97847 0.99274 0.92969 0.91543 0.91134 0.91727 0.94860 0.84438 0.92903 0.96816 0.99350 0.98992 0.92773 0.94945 0.90177 0.90023 0.92686 0.91383 0.91650 0.93261 0.91262 0.95276 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.83 71.98 0.64 -2.50 16 2 C 0.09 2.12 2.44 44.92 0.11 2.23 16 3 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 4 C 0.06 1.84 4.62 86.30 0.40 2.24 16 5 N -0.67 -24.85 6.12 -513.87 -3.15 -28.00 16 6 C 0.08 3.70 5.62 86.30 0.49 4.19 16 7 C 0.04 1.99 5.23 29.85 0.16 2.15 16 8 C -0.54 -31.95 9.11 25.60 0.23 -31.72 16 9 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 10 C 0.00 0.05 5.46 84.65 0.46 0.51 16 11 N -0.93 -58.22 13.29 21.45 0.28 -57.93 16 12 Si 0.97 45.06 29.54 68.60 2.03 47.08 16 13 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 14 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 15 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 16 N -0.53 -13.68 4.23 -871.09 -3.68 -17.36 16 17 C 0.05 1.09 5.26 86.33 0.45 1.54 16 18 C -0.11 -2.26 6.10 30.65 0.19 -2.07 16 19 C -0.12 -2.26 6.00 30.67 0.18 -2.08 16 20 C -0.12 -2.86 6.10 30.65 0.19 -2.67 16 21 C 0.06 1.64 5.08 86.33 0.44 2.08 16 22 H 0.05 1.34 6.63 -2.39 -0.02 1.32 16 23 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.07 1.30 6.33 -2.39 -0.02 1.28 16 25 H 0.06 1.88 6.57 -2.38 -0.02 1.87 16 26 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.34 12.48 6.92 -89.70 -0.62 11.86 16 28 H 0.05 2.31 8.14 -2.39 -0.02 2.30 16 29 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 30 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 31 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 32 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 33 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.08 1.55 6.08 -2.39 -0.01 1.54 16 35 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 39 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.07 2.01 5.91 -2.39 -0.01 1.99 16 Total: -1.00 -64.89 320.97 -0.25 -65.14 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.34 Total: 17.17 kcal Atomic # 6 Polarization: -30.03 SS G_CDS: 3.93 Total: -26.10 kcal Atomic # 7 Polarization: -96.75 SS G_CDS: -6.54 Total: -103.29 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -64.89 -0.25 -65.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044993606.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.834 kcal (2) G-P(sol) polarization free energy of solvation -64.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds