Wall clock time and date at job start Mon Mar 30 2020 03:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47349 * 2 1 4 4 N 1.46906 * 109.46786 * 119.99336 * 2 1 3 5 5 C 1.47849 * 110.99874 * 184.60995 * 4 2 1 6 6 C 1.54904 * 104.79512 * 213.63783 * 5 4 2 7 7 C 1.55146 * 101.65375 * 37.07499 * 6 5 4 8 8 H 1.09001 * 110.85558 * 82.79530 * 7 6 5 9 9 C 1.52996 * 110.70581 * 205.96463 * 7 6 5 10 10 N 1.46907 * 109.47050 * 288.59638 * 9 7 6 11 11 C 1.46892 * 111.00307 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.47193 * 325.00047 * 11 10 9 13 13 C 1.52996 * 109.47119 * 84.99613 * 11 10 9 14 14 C 1.50701 * 109.47196 * 205.00036 * 11 10 9 15 15 H 1.07996 * 120.00067 * 359.97438 * 14 11 10 16 16 C 1.37878 * 119.99742 * 179.97438 * 14 11 10 17 17 N 1.31515 * 120.00296 * 0.02562 * 16 14 11 18 18 Si 1.86802 * 120.00044 * 179.97438 * 16 14 11 19 19 H 1.48505 * 109.46981 * 60.00002 * 18 16 14 20 20 H 1.48495 * 109.47502 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47065 * 300.00533 * 18 16 14 22 22 C 1.47443 * 110.99673 * 63.77142 * 4 2 1 23 23 H 1.09001 * 109.47678 * 300.00496 * 1 2 3 24 24 H 1.09006 * 109.46949 * 60.00330 * 1 2 3 25 25 H 1.08997 * 109.46945 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47416 * 239.99528 * 2 1 3 27 27 H 1.08992 * 109.47477 * 185.77938 * 3 2 1 28 28 H 1.09001 * 109.46779 * 305.77652 * 3 2 1 29 29 H 1.09007 * 109.47194 * 65.77256 * 3 2 1 30 30 H 1.08999 * 110.37396 * 332.47134 * 5 4 2 31 31 H 1.09001 * 110.36784 * 94.81154 * 5 4 2 32 32 H 1.08994 * 110.99522 * 278.98020 * 6 5 4 33 33 H 1.09004 * 111.02128 * 155.17483 * 6 5 4 34 34 H 1.08997 * 109.47480 * 48.59071 * 9 7 6 35 35 H 1.08997 * 109.47336 * 168.60002 * 9 7 6 36 36 H 1.00901 * 110.99834 * 56.04784 * 10 9 7 37 37 H 1.09003 * 109.47194 * 60.00757 * 13 11 10 38 38 H 1.09004 * 109.47366 * 180.02562 * 13 11 10 39 39 H 1.09000 * 109.47430 * 300.00268 * 13 11 10 40 40 H 0.97000 * 119.99898 * 179.97438 * 17 16 14 41 41 H 1.08996 * 109.89013 * 242.66185 * 22 4 2 42 42 H 1.09003 * 109.88799 * 3.85032 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1996 5 6 3.4933 -0.6168 1.2905 6 6 3.9185 -1.9556 1.9434 7 6 2.9134 -2.9494 1.3038 8 1 3.2553 -3.2671 0.3187 9 6 2.6948 -4.1591 2.2146 10 7 3.8995 -4.9998 2.2097 11 6 3.7257 -6.1740 3.0750 12 1 3.1194 -5.9020 3.9391 13 6 3.0261 -7.2861 2.2910 14 6 5.0744 -6.6592 3.5403 15 1 5.9711 -6.1469 3.2244 16 6 5.1636 -7.7574 4.3693 17 7 4.0717 -8.3817 4.7535 18 14 6.8354 -8.3593 4.9455 19 1 7.5152 -7.2798 5.7057 20 1 6.6597 -9.5463 5.8204 21 1 7.6607 -8.7307 3.7681 22 6 1.6221 -2.1122 1.1893 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 3.1250 1.4442 -0.1035 28 1 1.5947 1.9852 -0.8338 29 1 1.7635 1.9256 0.9372 30 1 3.9306 -0.5235 0.2965 31 1 3.7921 0.2230 1.9178 32 1 3.7958 -1.9186 3.0258 33 1 4.9440 -2.2121 1.6773 34 1 2.4942 -3.8178 3.2301 35 1 1.8460 -4.7386 1.8516 36 1 4.7128 -4.4677 2.4808 37 1 3.6324 -7.5582 1.4269 38 1 2.8967 -8.1573 2.9332 39 1 2.0506 -6.9351 1.9545 40 1 4.1345 -9.1544 5.3364 41 1 0.9688 -2.3205 2.0366 42 1 1.1094 -2.3470 0.2565 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045135021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:25 Heat of formation + Delta-G solvation = -11.105932 kcal Electronic energy + Delta-G solvation = -17703.015638 eV Core-core repulsion = 15103.145885 eV Total energy + Delta-G solvation = -2599.869753 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.42998 -36.20399 -34.37811 -32.37346 -30.11775 -29.32659 -27.68591 -26.88248 -25.22416 -23.39891 -22.04163 -20.22627 -19.69416 -19.60389 -16.58582 -16.27210 -15.63936 -14.93109 -14.61147 -14.06231 -13.81821 -13.40134 -13.28316 -13.09220 -12.58759 -12.36939 -12.22532 -12.18839 -11.90525 -11.47367 -11.26499 -11.06404 -11.03053 -10.89849 -10.82894 -10.67728 -10.52022 -10.32110 -10.15579 -10.06537 -9.77494 -8.80658 -8.45575 -8.28084 -7.22922 -6.00956 -4.07508 3.31854 3.36249 3.38944 3.92707 4.40922 4.67272 4.80333 4.85500 5.02052 5.04608 5.21691 5.30290 5.36428 5.48714 5.55191 5.60623 5.67108 5.69802 5.78400 5.78780 5.85868 6.00945 6.04754 6.07449 6.17639 6.22903 6.30871 6.47155 6.63624 6.90954 7.01447 7.13996 7.16489 7.26438 7.53785 7.79551 7.92552 8.29797 8.42603 8.70820 9.03515 9.58366 11.05381 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.050316 B = 0.004241 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.347719 B = 6601.101812 C = 6990.120211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.070 3.930 3 C -0.146 4.146 4 N -0.526 5.526 5 C 0.045 3.955 6 C -0.126 4.126 7 C -0.105 4.105 8 H 0.079 0.921 9 C 0.073 3.927 10 N -0.689 5.689 11 C 0.211 3.789 12 H 0.000 1.000 13 C -0.124 4.124 14 C -0.519 4.519 15 H 0.058 0.942 16 C 0.062 3.938 17 N -0.890 5.890 18 Si 0.897 3.103 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.047 3.953 23 H 0.062 0.938 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.039 0.961 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.021 0.979 35 H 0.062 0.938 36 H 0.329 0.671 37 H 0.030 0.970 38 H 0.080 0.920 39 H 0.003 0.997 40 H 0.261 0.739 41 H 0.077 0.923 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.688 15.777 -8.117 18.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.039 4.039 3 C -0.203 4.203 4 N -0.251 5.251 5 C -0.083 4.083 6 C -0.164 4.164 7 C -0.124 4.124 8 H 0.097 0.903 9 C -0.058 4.058 10 N -0.320 5.320 11 C 0.103 3.897 12 H 0.018 0.982 13 C -0.182 4.182 14 C -0.557 4.557 15 H 0.077 0.923 16 C -0.140 4.140 17 N -0.529 5.529 18 Si 0.725 3.275 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.081 4.081 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.039 0.961 35 H 0.080 0.920 36 H 0.146 0.854 37 H 0.049 0.951 38 H 0.098 0.902 39 H 0.022 0.978 40 H 0.071 0.929 41 H 0.095 0.905 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.170 15.529 -8.152 18.285 hybrid contribution 1.250 -0.430 0.482 1.407 sum -3.920 15.098 -7.670 17.383 Atomic orbital electron populations 1.21865 0.94408 1.02100 1.01834 1.21786 0.95785 0.95042 0.91250 1.21874 1.00841 0.95438 1.02157 1.63702 1.10907 1.12933 1.37557 1.23004 0.87439 0.98524 0.99322 1.22780 0.99404 0.93544 1.00653 1.22430 0.94658 0.95074 1.00270 0.90254 1.21833 0.95373 0.92470 0.96085 1.60724 1.03207 1.09600 1.58471 1.19092 0.95828 0.86124 0.88629 0.98226 1.21708 0.95562 1.01425 0.99506 1.21234 0.92326 1.13413 1.28753 0.92337 1.24922 0.96673 0.96417 0.95992 1.69890 1.27159 1.20790 1.35080 0.86587 0.84181 0.78159 0.78616 1.20323 1.21299 1.20211 1.22867 0.97487 0.86466 1.01306 0.91866 0.92549 0.92524 0.94349 0.92771 0.92444 0.91781 0.93857 0.90646 0.90782 0.90631 0.96083 0.91963 0.85384 0.95051 0.90161 0.97775 0.92887 0.90473 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.13 37.16 0.34 -1.02 16 2 C 0.07 0.73 2.23 -67.71 -0.15 0.58 16 3 C -0.15 -1.30 8.87 37.16 0.33 -0.97 16 4 N -0.53 -6.47 5.03 -223.29 -1.12 -7.59 16 5 C 0.04 0.53 5.44 -2.30 -0.01 0.52 16 6 C -0.13 -1.70 5.92 -24.59 -0.15 -1.85 16 7 C -0.10 -1.54 3.16 -88.79 -0.28 -1.82 16 8 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 9 C 0.07 1.33 4.83 -3.82 -0.02 1.31 16 10 N -0.69 -14.87 6.30 -107.96 -0.68 -15.55 16 11 C 0.21 5.44 2.60 -68.87 -0.18 5.27 16 12 H 0.00 0.00 7.80 -51.93 -0.41 -0.40 16 13 C -0.12 -3.15 9.19 37.16 0.34 -2.80 16 14 C -0.52 -14.42 8.59 -34.44 -0.30 -14.71 16 15 H 0.06 1.59 7.62 -52.49 -0.40 1.20 16 16 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 17 N -0.89 -25.74 11.32 55.43 0.63 -25.11 16 18 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.05 0.62 5.76 -2.83 -0.02 0.60 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.55 6.73 -51.93 -0.35 0.20 16 26 H 0.04 0.42 8.13 -51.93 -0.42 0.00 16 27 H 0.05 0.48 7.03 -51.93 -0.37 0.11 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.04 0.49 7.38 -51.93 -0.38 0.11 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.07 7.94 -51.93 -0.41 0.66 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.02 0.40 7.91 -51.93 -0.41 -0.01 16 35 H 0.06 1.16 7.43 -51.93 -0.39 0.78 16 36 H 0.33 6.92 7.65 -39.29 -0.30 6.62 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 39 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 41 H 0.08 1.06 7.82 -51.93 -0.41 0.65 16 42 H 0.05 0.66 6.60 -51.93 -0.34 0.32 16 LS Contribution 321.55 15.07 4.85 4.85 Total: -1.00 -28.40 321.55 -9.34 -37.73 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -7.80 Total: 2.55 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: -0.18 Total: -13.28 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: -1.18 Total: -48.25 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.40 -9.34 -37.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045135021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.628 kcal (2) G-P(sol) polarization free energy of solvation -28.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds