Wall clock time and date at job start Mon Mar 30 2020 03:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47349 * 2 1 4 4 N 1.46906 * 109.46786 * 119.99336 * 2 1 3 5 5 C 1.47849 * 110.99874 * 184.60995 * 4 2 1 6 6 C 1.54904 * 104.79512 * 213.63783 * 5 4 2 7 7 C 1.55146 * 101.65375 * 37.07499 * 6 5 4 8 8 H 1.09001 * 110.85558 * 82.79530 * 7 6 5 9 9 C 1.52996 * 110.70581 * 205.96463 * 7 6 5 10 10 N 1.46907 * 109.47050 * 288.59638 * 9 7 6 11 11 C 1.46892 * 111.00307 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.47193 * 325.00047 * 11 10 9 13 13 C 1.52996 * 109.47119 * 84.99613 * 11 10 9 14 14 C 1.50701 * 109.47196 * 205.00036 * 11 10 9 15 15 H 1.07996 * 120.00067 * 359.97438 * 14 11 10 16 16 C 1.37878 * 119.99742 * 179.97438 * 14 11 10 17 17 N 1.31515 * 120.00296 * 0.02562 * 16 14 11 18 18 Si 1.86802 * 120.00044 * 179.97438 * 16 14 11 19 19 H 1.48505 * 109.46981 * 60.00002 * 18 16 14 20 20 H 1.48495 * 109.47502 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47065 * 300.00533 * 18 16 14 22 22 C 1.47443 * 110.99673 * 63.77142 * 4 2 1 23 23 H 1.09001 * 109.47678 * 300.00496 * 1 2 3 24 24 H 1.09006 * 109.46949 * 60.00330 * 1 2 3 25 25 H 1.08997 * 109.46945 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47416 * 239.99528 * 2 1 3 27 27 H 1.08992 * 109.47477 * 185.77938 * 3 2 1 28 28 H 1.09001 * 109.46779 * 305.77652 * 3 2 1 29 29 H 1.09007 * 109.47194 * 65.77256 * 3 2 1 30 30 H 1.08999 * 110.37396 * 332.47134 * 5 4 2 31 31 H 1.09001 * 110.36784 * 94.81154 * 5 4 2 32 32 H 1.08994 * 110.99522 * 278.98020 * 6 5 4 33 33 H 1.09004 * 111.02128 * 155.17483 * 6 5 4 34 34 H 1.08997 * 109.47480 * 48.59071 * 9 7 6 35 35 H 1.08997 * 109.47336 * 168.60002 * 9 7 6 36 36 H 1.00901 * 110.99834 * 56.04784 * 10 9 7 37 37 H 1.09003 * 109.47194 * 60.00757 * 13 11 10 38 38 H 1.09004 * 109.47366 * 180.02562 * 13 11 10 39 39 H 1.09000 * 109.47430 * 300.00268 * 13 11 10 40 40 H 0.97000 * 119.99898 * 179.97438 * 17 16 14 41 41 H 1.08996 * 109.89013 * 242.66185 * 22 4 2 42 42 H 1.09003 * 109.88799 * 3.85032 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1996 5 6 3.4933 -0.6168 1.2905 6 6 3.9185 -1.9556 1.9434 7 6 2.9134 -2.9494 1.3038 8 1 3.2553 -3.2671 0.3187 9 6 2.6948 -4.1591 2.2146 10 7 3.8995 -4.9998 2.2097 11 6 3.7257 -6.1740 3.0750 12 1 3.1194 -5.9020 3.9391 13 6 3.0261 -7.2861 2.2910 14 6 5.0744 -6.6592 3.5403 15 1 5.9711 -6.1469 3.2244 16 6 5.1636 -7.7574 4.3693 17 7 4.0717 -8.3817 4.7535 18 14 6.8354 -8.3593 4.9455 19 1 7.5152 -7.2798 5.7057 20 1 6.6597 -9.5463 5.8204 21 1 7.6607 -8.7307 3.7681 22 6 1.6221 -2.1122 1.1893 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 3.1250 1.4442 -0.1035 28 1 1.5947 1.9852 -0.8338 29 1 1.7635 1.9256 0.9372 30 1 3.9306 -0.5235 0.2965 31 1 3.7921 0.2230 1.9178 32 1 3.7958 -1.9186 3.0258 33 1 4.9440 -2.2121 1.6773 34 1 2.4942 -3.8178 3.2301 35 1 1.8460 -4.7386 1.8516 36 1 4.7128 -4.4677 2.4808 37 1 3.6324 -7.5582 1.4269 38 1 2.8967 -8.1573 2.9332 39 1 2.0506 -6.9351 1.9545 40 1 4.1345 -9.1544 5.3364 41 1 0.9688 -2.3205 2.0366 42 1 1.1094 -2.3470 0.2565 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045135021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:25 Heat of formation + Delta-G solvation = -29.532423 kcal Electronic energy + Delta-G solvation = -17703.814670 eV Core-core repulsion = 15103.145885 eV Total energy + Delta-G solvation = -2600.668786 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.47276 -37.84284 -35.72304 -34.14742 -31.61305 -30.32414 -29.20862 -27.81533 -27.29110 -24.87792 -23.01739 -21.75252 -21.22603 -20.66911 -18.56381 -17.25172 -16.95180 -16.74075 -15.96991 -15.42218 -15.09317 -14.96453 -14.37386 -14.32549 -14.16196 -13.58305 -13.41211 -13.18506 -13.04946 -12.92840 -12.86316 -12.70692 -12.42544 -12.21984 -12.18958 -12.07274 -11.87750 -11.72677 -11.70128 -11.51649 -11.40558 -10.88647 -10.57460 -9.23652 -9.06791 -8.13746 -6.28537 1.42350 1.44514 1.52143 2.41256 3.00229 3.14555 3.48534 3.73546 3.74508 4.08397 4.15108 4.20214 4.38306 4.45829 4.50135 4.51909 4.58454 4.75750 4.84087 4.84593 4.89825 4.94699 4.97201 5.00938 5.04204 5.06580 5.12165 5.18131 5.21724 5.31881 5.38719 5.41660 5.48556 5.66268 5.85257 6.03591 6.21245 6.23794 6.46802 6.77058 7.00058 7.42088 8.91925 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.050316 B = 0.004241 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.347719 B = 6601.101812 C = 6990.120211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.066 3.934 3 C -0.141 4.141 4 N -0.534 5.534 5 C 0.051 3.949 6 C -0.125 4.125 7 C -0.096 4.096 8 H 0.077 0.923 9 C 0.077 3.923 10 N -0.685 5.685 11 C 0.214 3.786 12 H -0.033 1.033 13 C -0.112 4.112 14 C -0.540 4.540 15 H 0.060 0.940 16 C 0.012 3.988 17 N -0.919 5.919 18 Si 0.964 3.036 19 H -0.270 1.270 20 H -0.284 1.284 21 H -0.271 1.271 22 C 0.054 3.946 23 H 0.058 0.942 24 H 0.073 0.927 25 H 0.049 0.951 26 H 0.037 0.963 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.011 0.989 35 H 0.056 0.944 36 H 0.332 0.668 37 H 0.028 0.972 38 H 0.057 0.943 39 H 0.020 0.980 40 H 0.263 0.737 41 H 0.068 0.932 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.034 17.028 -9.006 19.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.043 4.043 3 C -0.199 4.199 4 N -0.259 5.259 5 C -0.076 4.076 6 C -0.163 4.163 7 C -0.116 4.116 8 H 0.096 0.904 9 C -0.053 4.053 10 N -0.315 5.315 11 C 0.105 3.895 12 H -0.016 1.016 13 C -0.171 4.171 14 C -0.578 4.578 15 H 0.078 0.922 16 C -0.187 4.187 17 N -0.558 5.558 18 Si 0.789 3.211 19 H -0.195 1.195 20 H -0.209 1.209 21 H -0.196 1.196 22 C -0.075 4.075 23 H 0.077 0.923 24 H 0.092 0.908 25 H 0.068 0.932 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.029 0.971 35 H 0.074 0.926 36 H 0.150 0.850 37 H 0.047 0.953 38 H 0.075 0.925 39 H 0.039 0.961 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.519 16.803 -9.055 19.616 hybrid contribution 0.992 -0.789 0.748 1.472 sum -3.527 16.014 -8.307 18.382 Atomic orbital electron populations 1.21852 0.93710 1.01882 1.02502 1.21909 0.96412 0.95699 0.90244 1.21843 1.01015 0.94375 1.02630 1.63729 1.11180 1.12146 1.38886 1.22975 0.87225 0.97620 0.99787 1.22750 0.99226 0.94332 0.99969 1.22297 0.96211 0.93951 0.99149 0.90448 1.21839 0.93738 0.93273 0.96425 1.60648 1.04661 1.09348 1.56872 1.18920 0.94696 0.87746 0.88128 1.01589 1.21535 0.96400 1.00480 0.98675 1.21568 0.93087 1.13884 1.29282 0.92189 1.25764 1.00410 0.96509 0.96000 1.70023 1.29240 1.21091 1.35444 0.85520 0.79608 0.77709 0.78236 1.19479 1.20909 1.19572 1.22748 0.96383 0.86936 1.01409 0.92289 0.90801 0.93187 0.94530 0.92604 0.90835 0.92209 0.92899 0.89681 0.91963 0.90387 0.97117 0.92566 0.85029 0.95322 0.92461 0.96070 0.92802 0.91363 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.13 71.98 0.66 -1.74 16 2 C 0.07 1.23 2.23 44.91 0.10 1.33 16 3 C -0.14 -2.17 8.87 71.98 0.64 -1.53 16 4 N -0.53 -12.26 5.03 -860.36 -4.33 -16.59 16 5 C 0.05 1.12 5.44 86.77 0.47 1.59 16 6 C -0.12 -3.25 5.92 31.98 0.19 -3.06 16 7 C -0.10 -2.76 3.16 -9.61 -0.03 -2.79 16 8 H 0.08 2.28 8.14 -2.39 -0.02 2.27 16 9 C 0.08 2.83 4.83 86.30 0.42 3.24 16 10 N -0.68 -29.64 6.30 -495.46 -3.12 -32.76 16 11 C 0.21 11.22 2.60 44.17 0.11 11.34 16 12 H -0.03 -1.95 7.80 -2.38 -0.02 -1.97 16 13 C -0.11 -5.79 9.19 71.98 0.66 -5.12 16 14 C -0.54 -30.19 8.59 25.60 0.22 -29.97 16 15 H 0.06 3.26 7.62 -2.91 -0.02 3.23 16 16 C 0.01 0.69 5.30 84.65 0.45 1.14 16 17 N -0.92 -53.74 11.32 21.45 0.24 -53.50 16 18 Si 0.96 43.74 29.54 68.60 2.03 45.77 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 22 C 0.05 1.35 5.76 86.65 0.50 1.85 16 23 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 25 H 0.05 0.90 6.73 -2.39 -0.02 0.88 16 26 H 0.04 0.72 8.13 -2.39 -0.02 0.70 16 27 H 0.05 0.84 7.03 -2.39 -0.02 0.82 16 28 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.05 1.07 7.38 -2.39 -0.02 1.05 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 1.77 7.94 -2.39 -0.02 1.75 16 33 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.01 0.41 7.91 -2.39 -0.02 0.40 16 35 H 0.06 2.11 7.43 -2.39 -0.02 2.09 16 36 H 0.33 13.98 7.65 -89.69 -0.69 13.29 16 37 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.06 3.21 6.07 -2.39 -0.01 3.19 16 39 H 0.02 0.96 7.45 -2.39 -0.02 0.94 16 40 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 41 H 0.07 1.84 7.82 -2.39 -0.02 1.82 16 42 H 0.06 1.46 6.60 -2.39 -0.02 1.44 16 Total: -1.00 -59.92 321.55 -0.52 -60.43 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: 0.28 Total: 20.37 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: 4.39 Total: -23.72 kcal Atomic # 7 Polarization: -95.64 SS G_CDS: -7.21 Total: -102.85 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -59.92 -0.52 -60.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045135021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.901 kcal (2) G-P(sol) polarization free energy of solvation -59.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds