Wall clock time and date at job start Mon Mar 30 2020 03:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46903 * 2 1 4 4 C 1.53000 * 109.47076 * 119.99664 * 2 1 3 5 5 N 1.46900 * 109.46781 * 65.23872 * 4 2 1 6 6 C 1.46955 * 110.99919 * 75.91060 * 5 4 2 7 7 C 1.53055 * 109.36305 * 183.18437 * 6 5 4 8 8 N 1.46947 * 109.36605 * 301.59911 * 7 6 5 9 9 C 1.46899 * 111.00201 * 183.18681 * 8 7 6 10 10 H 1.09000 * 109.47184 * 54.99922 * 9 8 7 11 11 C 1.53008 * 109.47221 * 295.00294 * 9 8 7 12 12 C 1.50698 * 109.47772 * 175.00369 * 9 8 7 13 13 H 1.08004 * 119.99443 * 5.16617 * 12 9 8 14 14 C 1.37876 * 120.00271 * 185.45157 * 12 9 8 15 15 N 1.31511 * 120.00151 * 355.27001 * 14 12 9 16 16 Si 1.86804 * 119.99813 * 175.27926 * 14 12 9 17 17 H 1.48496 * 109.47586 * 94.99345 * 16 14 12 18 18 H 1.48506 * 109.46908 * 214.99259 * 16 14 12 19 19 H 1.48501 * 109.47167 * 334.98816 * 16 14 12 20 20 C 1.46955 * 110.88059 * 59.32119 * 8 7 6 21 21 C 1.46961 * 110.99989 * 199.70812 * 5 4 2 22 22 H 1.09001 * 109.46891 * 184.90342 * 1 2 3 23 23 H 1.08993 * 109.47335 * 304.90685 * 1 2 3 24 24 H 1.09005 * 109.46795 * 64.91133 * 1 2 3 25 25 H 1.08999 * 109.47692 * 240.00117 * 2 1 3 26 26 H 1.09000 * 109.46900 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47167 * 299.99715 * 3 2 1 28 28 H 1.08997 * 109.47514 * 59.99943 * 3 2 1 29 29 H 1.09003 * 109.47165 * 305.24182 * 4 2 1 30 30 H 1.08994 * 109.47227 * 185.23616 * 4 2 1 31 31 H 1.09001 * 109.49062 * 63.21988 * 6 5 4 32 32 H 1.08998 * 109.49227 * 303.15012 * 6 5 4 33 33 H 1.08997 * 109.48617 * 181.63231 * 7 6 5 34 34 H 1.08999 * 109.50459 * 61.58189 * 7 6 5 35 35 H 1.09001 * 109.46855 * 174.75183 * 11 9 8 36 36 H 1.08997 * 109.46558 * 294.75246 * 11 9 8 37 37 H 1.08999 * 109.46736 * 54.75346 * 11 9 8 38 38 H 0.96999 * 120.00135 * 180.02562 * 15 14 12 39 39 H 1.09001 * 109.49062 * 60.64507 * 20 8 7 40 40 H 1.09002 * 109.49365 * 180.70752 * 20 8 7 41 41 H 1.09001 * 109.48914 * 296.78113 * 21 5 4 42 42 H 1.09000 * 109.48483 * 56.84398 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6562 -2.1378 1.1877 6 6 2.5090 -2.8739 0.2440 7 6 2.0275 -4.3237 0.1495 8 7 2.0697 -4.9391 1.4832 9 6 1.6860 -6.3557 1.4218 10 1 2.3189 -6.8726 0.7004 11 6 0.2226 -6.4695 0.9899 12 6 1.8586 -6.9825 2.7813 13 1 2.1370 -6.3705 3.6266 14 6 1.6669 -8.3380 2.9449 15 7 1.2433 -9.0687 1.9368 16 14 2.0084 -9.1367 4.5987 17 1 0.7465 -9.2234 5.3767 18 1 2.5536 -10.5016 4.3861 19 1 2.9968 -8.3201 5.3481 20 6 1.2170 -4.2030 2.4269 21 6 1.6985 -2.7533 2.5216 22 1 -0.3633 -1.0239 0.0878 23 1 -0.3633 0.5880 0.8427 24 1 -0.3633 0.4358 -0.9308 25 1 1.8934 -0.5138 -0.8900 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6020 -0.2644 2.1368 30 1 3.1259 -0.6407 1.2974 31 1 3.5406 -2.8555 0.5955 32 1 2.4511 -2.4067 -0.7391 33 1 2.6764 -4.8788 -0.5279 34 1 1.0052 -4.3437 -0.2281 35 1 -0.0355 -7.5198 0.8540 36 1 -0.4175 -6.0343 1.7573 37 1 0.0785 -5.9355 0.0506 38 1 1.1081 -10.0223 2.0520 39 1 0.1854 -4.2214 2.0754 40 1 1.2748 -4.6703 3.4100 41 1 2.7208 -2.7336 2.8990 42 1 1.0496 -2.1981 3.1989 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048738972.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:16 Heat of formation + Delta-G solvation = -1.551252 kcal Electronic energy + Delta-G solvation = -18320.053806 eV Core-core repulsion = 15720.598375 eV Total energy + Delta-G solvation = -2599.455431 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.00891 -36.62796 -34.26196 -32.31042 -30.36687 -29.16067 -27.09715 -26.25928 -25.21313 -23.53118 -22.91240 -20.60640 -19.77411 -18.58430 -16.20128 -15.86219 -15.16864 -14.68321 -14.58150 -14.19160 -14.02198 -13.70218 -13.35852 -12.86790 -12.60013 -12.42676 -12.25153 -11.91541 -11.66700 -11.31272 -11.14513 -11.03480 -10.92095 -10.79737 -10.69403 -10.60913 -10.43964 -10.24214 -10.20446 -9.91334 -9.52839 -8.77985 -8.39125 -8.01256 -7.06992 -5.99068 -4.01511 3.32086 3.39206 3.43733 4.15838 4.43987 4.82361 4.96791 5.04585 5.18408 5.34683 5.41582 5.46906 5.59502 5.65234 5.70146 5.70911 5.87694 5.89153 5.90406 5.98987 6.02961 6.11937 6.14962 6.26951 6.36932 6.48328 6.51589 6.67991 6.72601 6.87228 6.90636 7.18041 7.36192 7.38319 7.57437 7.73977 7.85428 8.16922 8.42265 8.64952 9.04062 9.63137 11.09145 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.048947 B = 0.005148 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.905905 B = 5437.879674 C = 5645.235653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.091 4.091 3 C -0.146 4.146 4 C 0.059 3.941 5 N -0.537 5.537 6 C 0.061 3.939 7 C 0.054 3.946 8 N -0.533 5.533 9 C 0.211 3.789 10 H 0.040 0.960 11 C -0.166 4.166 12 C -0.500 4.500 13 H 0.061 0.939 14 C 0.059 3.941 15 N -0.894 5.894 16 Si 0.894 3.106 17 H -0.283 1.283 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.065 3.935 21 C 0.058 3.942 22 H 0.070 0.930 23 H 0.046 0.954 24 H 0.043 0.957 25 H 0.068 0.932 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.031 0.969 31 H 0.035 0.965 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.035 0.965 35 H 0.078 0.922 36 H 0.031 0.969 37 H 0.009 0.991 38 H 0.259 0.741 39 H 0.033 0.967 40 H 0.084 0.916 41 H 0.035 0.965 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.211 15.985 -3.076 16.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 C -0.204 4.204 4 C -0.069 4.069 5 N -0.261 5.261 6 C -0.067 4.067 7 C -0.075 4.075 8 N -0.257 5.257 9 C 0.105 3.895 10 H 0.058 0.942 11 C -0.225 4.225 12 C -0.539 4.539 13 H 0.079 0.921 14 C -0.142 4.142 15 N -0.533 5.533 16 Si 0.722 3.278 17 H -0.209 1.209 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.063 4.063 21 C -0.070 4.070 22 H 0.089 0.911 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.087 0.913 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.053 0.947 35 H 0.097 0.903 36 H 0.050 0.950 37 H 0.028 0.972 38 H 0.069 0.931 39 H 0.052 0.948 40 H 0.103 0.897 41 H 0.053 0.947 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.182 15.778 -3.110 16.083 hybrid contribution 0.146 -0.550 0.829 1.006 sum 0.328 15.228 -2.280 15.401 Atomic orbital electron populations 1.21716 0.94719 1.02817 1.00276 1.21088 0.96695 0.94965 0.98284 1.21827 1.00670 0.96340 1.01573 1.22143 0.97631 0.89020 0.98098 1.62122 1.53395 1.01313 1.09314 1.22183 0.94524 0.94333 0.95671 1.22062 0.99488 0.92849 0.93082 1.62507 1.52870 1.04632 1.05734 1.19291 0.90982 0.81828 0.97428 0.94213 1.22358 1.00867 1.02791 0.96467 1.21106 1.45945 0.92588 0.94218 0.92065 1.24923 0.95251 0.97296 0.96742 1.69922 1.46213 1.06398 1.30756 0.86543 0.78371 0.78739 0.84098 1.20935 1.21274 1.19843 1.21997 0.94874 0.90850 0.98622 1.22259 0.99610 0.95953 0.89189 0.91139 0.93485 0.93773 0.91327 0.93022 0.92751 0.92850 0.91392 0.95092 0.94641 0.91408 0.91426 0.94658 0.90305 0.95033 0.97171 0.93074 0.94838 0.89742 0.94664 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.14 37.16 0.34 -1.19 16 2 C -0.09 -0.99 2.98 -90.62 -0.27 -1.26 16 3 C -0.15 -1.31 9.19 37.16 0.34 -0.97 16 4 C 0.06 0.74 4.39 -3.82 -0.02 0.72 16 5 N -0.54 -8.13 4.02 -234.46 -0.94 -9.07 16 6 C 0.06 0.96 5.43 -3.77 -0.02 0.94 16 7 C 0.05 1.02 5.26 -3.77 -0.02 1.00 16 8 N -0.53 -11.62 4.69 -227.88 -1.07 -12.69 16 9 C 0.21 5.35 2.29 -68.86 -0.16 5.19 16 10 H 0.04 1.11 8.11 -51.93 -0.42 0.69 16 11 C -0.17 -4.05 8.21 37.16 0.31 -3.75 16 12 C -0.50 -13.70 7.94 -34.44 -0.27 -13.97 16 13 H 0.06 1.68 6.58 -52.48 -0.35 1.33 16 14 C 0.06 1.63 5.36 -17.82 -0.10 1.54 16 15 N -0.89 -25.63 11.60 55.43 0.64 -24.98 16 16 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 C 0.07 1.30 4.86 -3.77 -0.02 1.28 16 21 C 0.06 0.95 5.56 -3.77 -0.02 0.93 16 22 H 0.07 0.92 7.63 -51.93 -0.40 0.53 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.79 6.74 -51.93 -0.35 0.44 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.81 7.84 -51.93 -0.41 0.40 16 30 H 0.03 0.39 7.99 -51.93 -0.42 -0.03 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.94 6.72 -51.93 -0.35 0.59 16 33 H 0.07 1.25 8.12 -51.93 -0.42 0.83 16 34 H 0.04 0.69 6.49 -51.93 -0.34 0.35 16 35 H 0.08 2.11 6.47 -51.93 -0.34 1.78 16 36 H 0.03 0.76 6.76 -51.93 -0.35 0.40 16 37 H 0.01 0.21 6.35 -51.93 -0.33 -0.12 16 38 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.03 0.70 6.59 -51.93 -0.34 0.35 16 40 H 0.08 1.80 6.36 -51.93 -0.33 1.47 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.98 8.00 -51.93 -0.42 0.57 16 LS Contribution 313.83 15.07 4.73 4.73 Total: -1.00 -27.95 313.83 -9.21 -37.15 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -7.64 Total: -1.98 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.54 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: -1.37 Total: -46.74 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.95 -9.21 -37.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048738972.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.603 kcal (2) G-P(sol) polarization free energy of solvation -27.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds