Wall clock time and date at job start Mon Mar 30 2020 03:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46903 * 2 1 4 4 C 1.53000 * 109.47076 * 119.99664 * 2 1 3 5 5 N 1.46900 * 109.46781 * 65.23872 * 4 2 1 6 6 C 1.46955 * 110.99919 * 75.91060 * 5 4 2 7 7 C 1.53055 * 109.36305 * 183.18437 * 6 5 4 8 8 N 1.46947 * 109.36605 * 301.59911 * 7 6 5 9 9 C 1.46899 * 111.00201 * 183.18681 * 8 7 6 10 10 H 1.09000 * 109.47184 * 54.99922 * 9 8 7 11 11 C 1.53008 * 109.47221 * 295.00294 * 9 8 7 12 12 C 1.50698 * 109.47772 * 175.00369 * 9 8 7 13 13 H 1.08004 * 119.99443 * 5.16617 * 12 9 8 14 14 C 1.37876 * 120.00271 * 185.45157 * 12 9 8 15 15 N 1.31511 * 120.00151 * 355.27001 * 14 12 9 16 16 Si 1.86804 * 119.99813 * 175.27926 * 14 12 9 17 17 H 1.48496 * 109.47586 * 94.99345 * 16 14 12 18 18 H 1.48506 * 109.46908 * 214.99259 * 16 14 12 19 19 H 1.48501 * 109.47167 * 334.98816 * 16 14 12 20 20 C 1.46955 * 110.88059 * 59.32119 * 8 7 6 21 21 C 1.46961 * 110.99989 * 199.70812 * 5 4 2 22 22 H 1.09001 * 109.46891 * 184.90342 * 1 2 3 23 23 H 1.08993 * 109.47335 * 304.90685 * 1 2 3 24 24 H 1.09005 * 109.46795 * 64.91133 * 1 2 3 25 25 H 1.08999 * 109.47692 * 240.00117 * 2 1 3 26 26 H 1.09000 * 109.46900 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47167 * 299.99715 * 3 2 1 28 28 H 1.08997 * 109.47514 * 59.99943 * 3 2 1 29 29 H 1.09003 * 109.47165 * 305.24182 * 4 2 1 30 30 H 1.08994 * 109.47227 * 185.23616 * 4 2 1 31 31 H 1.09001 * 109.49062 * 63.21988 * 6 5 4 32 32 H 1.08998 * 109.49227 * 303.15012 * 6 5 4 33 33 H 1.08997 * 109.48617 * 181.63231 * 7 6 5 34 34 H 1.08999 * 109.50459 * 61.58189 * 7 6 5 35 35 H 1.09001 * 109.46855 * 174.75183 * 11 9 8 36 36 H 1.08997 * 109.46558 * 294.75246 * 11 9 8 37 37 H 1.08999 * 109.46736 * 54.75346 * 11 9 8 38 38 H 0.96999 * 120.00135 * 180.02562 * 15 14 12 39 39 H 1.09001 * 109.49062 * 60.64507 * 20 8 7 40 40 H 1.09002 * 109.49365 * 180.70752 * 20 8 7 41 41 H 1.09001 * 109.48914 * 296.78113 * 21 5 4 42 42 H 1.09000 * 109.48483 * 56.84398 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6562 -2.1378 1.1877 6 6 2.5090 -2.8739 0.2440 7 6 2.0275 -4.3237 0.1495 8 7 2.0697 -4.9391 1.4832 9 6 1.6860 -6.3557 1.4218 10 1 2.3189 -6.8726 0.7004 11 6 0.2226 -6.4695 0.9899 12 6 1.8586 -6.9825 2.7813 13 1 2.1370 -6.3705 3.6266 14 6 1.6669 -8.3380 2.9449 15 7 1.2433 -9.0687 1.9368 16 14 2.0084 -9.1367 4.5987 17 1 0.7465 -9.2234 5.3767 18 1 2.5536 -10.5016 4.3861 19 1 2.9968 -8.3201 5.3481 20 6 1.2170 -4.2030 2.4269 21 6 1.6985 -2.7533 2.5216 22 1 -0.3633 -1.0239 0.0878 23 1 -0.3633 0.5880 0.8427 24 1 -0.3633 0.4358 -0.9308 25 1 1.8934 -0.5138 -0.8900 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6020 -0.2644 2.1368 30 1 3.1259 -0.6407 1.2974 31 1 3.5406 -2.8555 0.5955 32 1 2.4511 -2.4067 -0.7391 33 1 2.6764 -4.8788 -0.5279 34 1 1.0052 -4.3437 -0.2281 35 1 -0.0355 -7.5198 0.8540 36 1 -0.4175 -6.0343 1.7573 37 1 0.0785 -5.9355 0.0506 38 1 1.1081 -10.0223 2.0520 39 1 0.1854 -4.2214 2.0754 40 1 1.2748 -4.6703 3.4100 41 1 2.7208 -2.7336 2.8990 42 1 1.0496 -2.1981 3.1989 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048738972.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:15 Heat of formation + Delta-G solvation = -19.013020 kcal Electronic energy + Delta-G solvation = -18320.811006 eV Core-core repulsion = 15720.598375 eV Total energy + Delta-G solvation = -2600.212630 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.42806 -37.98674 -35.65128 -34.13787 -31.82610 -30.90750 -27.87463 -27.68314 -27.28974 -24.86995 -24.37213 -22.32808 -20.72601 -20.17896 -18.22391 -17.35221 -16.49612 -16.22924 -15.78635 -15.73466 -15.45001 -15.20959 -14.64197 -14.39104 -14.16180 -13.66434 -13.51452 -13.14379 -12.99285 -12.88645 -12.70755 -12.59457 -12.49705 -12.35581 -12.10751 -12.04777 -11.83262 -11.73723 -11.63735 -11.35233 -11.15034 -10.79955 -10.51798 -9.23106 -8.83430 -8.11325 -6.20965 1.42113 1.43566 1.54711 2.43477 2.98217 3.17979 3.40125 3.90598 4.04157 4.14906 4.25481 4.34627 4.40699 4.45687 4.53955 4.67600 4.71678 4.73973 4.78539 4.85131 4.88761 4.90760 4.96578 5.03323 5.08181 5.13009 5.15482 5.19877 5.24403 5.33791 5.50524 5.53635 5.59893 5.70974 5.75256 6.11461 6.20805 6.22039 6.51455 6.75971 6.92238 7.47873 8.96291 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.048947 B = 0.005148 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.905905 B = 5437.879674 C = 5645.235653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.088 4.088 3 C -0.141 4.141 4 C 0.061 3.939 5 N -0.542 5.542 6 C 0.071 3.929 7 C 0.054 3.946 8 N -0.542 5.542 9 C 0.215 3.785 10 H 0.006 0.994 11 C -0.148 4.148 12 C -0.515 4.515 13 H 0.057 0.943 14 C 0.011 3.989 15 N -0.922 5.922 16 Si 0.959 3.041 17 H -0.277 1.277 18 H -0.284 1.284 19 H -0.269 1.269 20 C 0.069 3.931 21 C 0.068 3.932 22 H 0.047 0.953 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.034 0.966 31 H 0.032 0.968 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.027 0.973 35 H 0.052 0.948 36 H 0.028 0.972 37 H 0.025 0.975 38 H 0.261 0.739 39 H 0.022 0.978 40 H 0.065 0.935 41 H 0.031 0.969 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.456 17.962 -2.637 18.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.107 4.107 3 C -0.199 4.199 4 C -0.067 4.067 5 N -0.267 5.267 6 C -0.057 4.057 7 C -0.074 4.074 8 N -0.267 5.267 9 C 0.108 3.892 10 H 0.024 0.976 11 C -0.207 4.207 12 C -0.553 4.553 13 H 0.075 0.925 14 C -0.188 4.188 15 N -0.562 5.562 16 Si 0.785 3.215 17 H -0.202 1.202 18 H -0.209 1.209 19 H -0.193 1.193 20 C -0.059 4.059 21 C -0.060 4.060 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.045 0.955 35 H 0.071 0.929 36 H 0.047 0.953 37 H 0.044 0.956 38 H 0.070 0.930 39 H 0.041 0.959 40 H 0.083 0.917 41 H 0.049 0.951 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.429 17.784 -2.674 17.989 hybrid contribution 0.059 -1.130 0.646 1.303 sum 0.487 16.653 -2.029 16.784 Atomic orbital electron populations 1.21673 0.94877 1.01518 1.01133 1.21073 0.96477 0.96035 0.97154 1.21779 1.00923 0.94868 1.02349 1.22225 0.97985 0.87060 0.99400 1.62123 1.53509 1.02736 1.08322 1.22078 0.94090 0.92368 0.97166 1.22121 0.99117 0.94833 0.91371 1.62415 1.53273 1.03223 1.07756 1.19047 0.90579 0.83876 0.95716 0.97592 1.22129 1.00369 1.01137 0.97105 1.21364 1.45950 0.93068 0.94927 0.92488 1.25706 0.94994 0.97849 1.00206 1.70047 1.46879 1.06604 1.32634 0.85525 0.78372 0.77664 0.79937 1.20247 1.20947 1.19341 1.21946 0.94116 0.92888 0.96973 1.22121 0.99636 0.93782 0.90469 0.93422 0.92854 0.92779 0.91865 0.92603 0.91860 0.92244 0.90469 0.94737 0.95009 0.89056 0.91723 0.95456 0.92895 0.95266 0.95584 0.93010 0.95941 0.91654 0.95063 0.89254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.14 71.98 0.66 -2.00 16 2 C -0.09 -1.68 2.98 -10.79 -0.03 -1.71 16 3 C -0.14 -2.08 9.19 71.98 0.66 -1.41 16 4 C 0.06 1.34 4.39 86.30 0.38 1.72 16 5 N -0.54 -15.36 4.02 -895.71 -3.60 -18.97 16 6 C 0.07 2.12 5.43 86.31 0.47 2.59 16 7 C 0.05 2.02 5.26 86.31 0.45 2.48 16 8 N -0.54 -23.88 4.69 -874.89 -4.10 -27.98 16 9 C 0.22 11.20 2.29 44.17 0.10 11.30 16 10 H 0.01 0.36 8.11 -2.39 -0.02 0.34 16 11 C -0.15 -7.42 8.21 71.98 0.59 -6.82 16 12 C -0.51 -28.71 7.94 25.60 0.20 -28.50 16 13 H 0.06 3.16 6.58 -2.91 -0.02 3.14 16 14 C 0.01 0.61 5.36 84.65 0.45 1.07 16 15 N -0.92 -53.85 11.60 21.45 0.25 -53.60 16 16 Si 0.96 44.17 29.54 68.60 2.03 46.20 16 17 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 18 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 20 C 0.07 2.76 4.86 86.31 0.42 3.18 16 21 C 0.07 2.13 5.56 86.31 0.48 2.61 16 22 H 0.05 1.16 7.63 -2.39 -0.02 1.14 16 23 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 25 H 0.06 1.28 6.74 -2.39 -0.02 1.26 16 26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.08 1.58 7.84 -2.39 -0.02 1.56 16 30 H 0.03 0.76 7.99 -2.39 -0.02 0.74 16 31 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.09 2.32 6.72 -2.39 -0.02 2.31 16 33 H 0.06 2.41 8.12 -2.39 -0.02 2.39 16 34 H 0.03 1.06 6.49 -2.39 -0.02 1.05 16 35 H 0.05 2.91 6.47 -2.39 -0.02 2.90 16 36 H 0.03 1.42 6.76 -2.39 -0.02 1.41 16 37 H 0.03 1.17 6.35 -2.39 -0.02 1.15 16 38 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 39 H 0.02 0.94 6.59 -2.39 -0.02 0.92 16 40 H 0.07 2.82 6.36 -2.39 -0.02 2.80 16 41 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.09 2.41 8.00 -2.39 -0.02 2.39 16 Total: -1.00 -60.01 313.83 0.36 -59.65 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 0.96 Total: 10.22 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: 4.84 Total: -15.51 kcal Atomic # 7 Polarization: -93.09 SS G_CDS: -7.46 Total: -100.55 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -60.01 0.36 -59.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048738972.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.636 kcal (2) G-P(sol) polarization free energy of solvation -60.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds