Wall clock time and date at job start Mon Mar 30 2020 03:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46809 * 2 1 4 4 C 1.50690 * 109.47235 * 239.99726 * 2 1 3 5 5 H 1.08009 * 120.00230 * 245.45782 * 4 2 1 6 6 C 1.37873 * 120.00362 * 65.45761 * 4 2 1 7 7 N 1.31519 * 120.00132 * 9.55095 * 6 4 2 8 8 Si 1.86805 * 120.00360 * 189.55010 * 6 4 2 9 9 H 1.48499 * 109.46811 * 84.99704 * 8 6 4 10 10 H 1.48498 * 109.47141 * 204.99282 * 8 6 4 11 11 H 1.48496 * 109.47093 * 324.99732 * 8 6 4 12 12 N 1.46904 * 109.47122 * 119.99280 * 2 1 3 13 13 C 1.46898 * 111.00240 * 275.00323 * 12 2 1 14 14 H 1.09002 * 109.47197 * 35.00099 * 13 12 2 15 15 C 1.52995 * 109.47151 * 274.99925 * 13 12 2 16 16 C 1.52992 * 109.47297 * 154.99830 * 13 12 2 17 17 N 1.46899 * 109.47137 * 305.00273 * 16 13 12 18 18 C 1.46850 * 111.00041 * 294.20540 * 17 16 13 19 19 C 1.53035 * 109.52521 * 174.16142 * 18 17 16 20 20 C 1.53114 * 109.27835 * 59.18271 * 19 18 17 21 21 C 1.53123 * 109.16054 * 302.34498 * 20 19 18 22 22 C 1.46852 * 111.00205 * 169.99856 * 17 16 13 23 23 H 1.08999 * 109.46789 * 184.34676 * 1 2 3 24 24 H 1.08994 * 109.47425 * 304.34709 * 1 2 3 25 25 H 1.09003 * 109.47099 * 64.34923 * 1 2 3 26 26 H 0.96996 * 120.00472 * 179.97438 * 7 6 4 27 27 H 1.00893 * 110.99825 * 151.04846 * 12 2 1 28 28 H 1.09002 * 109.47212 * 300.00165 * 15 13 12 29 29 H 1.09006 * 109.47117 * 60.00124 * 15 13 12 30 30 H 1.08998 * 109.47299 * 179.97438 * 15 13 12 31 31 H 1.09002 * 109.47132 * 64.99515 * 16 13 12 32 32 H 1.09000 * 109.47422 * 184.99767 * 16 13 12 33 33 H 1.08998 * 109.46229 * 294.18006 * 18 17 16 34 34 H 1.08998 * 109.45714 * 54.14389 * 18 17 16 35 35 H 1.09003 * 109.50488 * 299.23818 * 19 18 17 36 36 H 1.08996 * 109.50360 * 179.12440 * 19 18 17 37 37 H 1.09003 * 109.52411 * 182.43975 * 20 19 18 38 38 H 1.08995 * 109.57730 * 62.28070 * 20 19 18 39 39 H 1.08999 * 109.50227 * 297.71250 * 21 20 19 40 40 H 1.08997 * 109.50399 * 177.60022 * 21 20 19 41 41 H 1.08996 * 109.46159 * 305.85371 * 22 17 16 42 42 H 1.08999 * 109.46139 * 65.82297 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2303 5 1 2.5787 -1.6371 -1.1337 6 6 1.7946 -0.1775 -2.4795 7 7 1.2991 1.0354 -2.5936 8 14 2.1763 -1.1783 -4.0100 9 1 1.0244 -2.0613 -4.3240 10 1 2.4228 -0.2616 -5.1520 11 1 3.3848 -2.0073 -3.7708 12 7 2.0197 -0.6924 1.1996 13 6 2.0824 0.2228 2.3469 14 1 1.2575 0.9331 2.2907 15 6 3.4110 0.9811 2.3224 16 6 1.9769 -0.5793 3.6454 17 7 0.7588 -1.3999 3.6166 18 6 -0.4437 -0.5570 3.6218 19 6 -1.6845 -1.4351 3.4448 20 6 -1.7487 -2.4553 4.5847 21 6 -0.4636 -3.2879 4.5871 22 6 0.7418 -2.3561 4.7310 23 1 -0.3633 -1.0247 0.0779 24 1 -0.3634 0.5798 0.8484 25 1 -0.3633 0.4449 -0.9264 26 1 1.1321 1.4104 -3.4724 27 1 2.9173 -1.1203 1.0289 28 1 4.2359 0.2708 2.3786 29 1 3.4861 1.5526 1.3972 30 1 3.4574 1.6605 3.1735 31 1 2.8485 -1.2264 3.7446 32 1 1.9341 0.1050 4.4928 33 1 -0.5089 -0.0231 4.5699 34 1 -0.3873 0.1612 2.8039 35 1 -1.6266 -1.9588 2.4905 36 1 -2.5778 -0.8109 3.4643 37 1 -2.6072 -3.1109 4.4390 38 1 -1.8464 -1.9336 5.5367 39 1 -0.3865 -3.8407 3.6509 40 1 -0.4847 -3.9874 5.4227 41 1 1.6592 -2.9445 4.7186 42 1 0.6711 -1.8138 5.6738 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049501487.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:39 Heat of formation + Delta-G solvation = -12.498703 kcal Electronic energy + Delta-G solvation = -18493.415148 eV Core-core repulsion = 15893.485000 eV Total energy + Delta-G solvation = -2599.930148 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.84733 -36.45146 -33.72843 -32.22749 -30.56583 -30.27712 -26.84957 -25.95801 -25.03745 -23.03357 -22.57752 -20.32149 -19.54549 -19.18254 -16.41870 -15.77726 -15.11618 -14.64974 -14.27364 -14.18091 -13.73699 -13.64987 -13.25403 -12.91503 -12.72681 -12.21492 -11.99924 -11.97812 -11.54403 -11.42463 -11.08344 -10.93043 -10.82435 -10.63523 -10.50946 -10.42313 -10.31139 -10.15210 -10.07135 -9.87962 -9.60946 -8.77624 -8.35714 -7.74302 -6.95452 -5.98368 -3.99020 3.35240 3.41186 3.44203 4.24826 4.47581 5.00035 5.04980 5.10727 5.27281 5.35819 5.46069 5.51348 5.66677 5.68563 5.73990 5.79265 5.84008 5.92815 6.00377 6.01075 6.08340 6.13880 6.22220 6.36103 6.36642 6.45048 6.59188 6.64302 6.67079 6.97576 7.25252 7.32393 7.49465 7.58497 7.64072 7.88599 7.99559 8.30272 8.55549 8.86433 9.15317 9.65684 11.10891 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027031 B = 0.006375 C = 0.005833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.597100 B = 4390.879884 C = 4799.200163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.212 3.788 3 H 0.004 0.996 4 C -0.515 4.515 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.890 3.110 9 H -0.280 1.280 10 H -0.289 1.289 11 H -0.275 1.275 12 N -0.661 5.661 13 C 0.087 3.913 14 H 0.068 0.932 15 C -0.178 4.178 16 C 0.072 3.928 17 N -0.507 5.507 18 C 0.059 3.941 19 C -0.116 4.116 20 C -0.119 4.119 21 C -0.115 4.115 22 C 0.057 3.943 23 H 0.035 0.965 24 H 0.005 0.995 25 H 0.057 0.943 26 H 0.259 0.741 27 H 0.327 0.673 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.067 0.933 32 H 0.020 0.980 33 H 0.016 0.984 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.179 -3.481 14.095 14.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.104 3.896 3 H 0.021 0.979 4 C -0.553 4.553 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.718 3.282 9 H -0.206 1.206 10 H -0.215 1.215 11 H -0.200 1.200 12 N -0.291 5.291 13 C -0.025 4.025 14 H 0.086 0.914 15 C -0.238 4.238 16 C -0.056 4.056 17 N -0.231 5.231 18 C -0.069 4.069 19 C -0.153 4.153 20 C -0.156 4.156 21 C -0.153 4.153 22 C -0.071 4.071 23 H 0.054 0.946 24 H 0.024 0.976 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.145 0.855 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.038 0.962 33 H 0.034 0.966 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -2.865 -3.867 13.679 14.501 hybrid contribution 0.946 0.605 -0.378 1.185 sum -1.918 -3.262 13.301 13.829 Atomic orbital electron populations 1.21616 0.98436 0.98669 0.98282 1.19063 0.91979 0.92662 0.85912 0.97856 1.21249 1.35410 1.07984 0.90706 0.92327 1.24906 0.95416 0.94595 0.98940 1.69975 1.45363 1.14015 1.23599 0.86643 0.78704 0.80098 0.82708 1.20595 1.21536 1.20049 1.60653 1.31700 1.31834 1.04921 1.21506 0.95609 0.93225 0.92166 0.91431 1.22488 0.98954 1.00688 1.01675 1.22108 0.92436 0.95004 0.96061 1.61690 1.01324 1.17701 1.42352 1.22095 0.90022 0.95208 0.99564 1.21551 0.96696 0.97541 0.99544 1.21560 0.97593 0.97991 0.98484 1.21553 0.94164 0.97503 1.02052 1.22051 0.98627 0.94878 0.91563 0.94602 0.97609 0.92454 0.93081 0.85537 0.92981 0.91972 0.93652 0.91492 0.96225 0.96599 0.89854 0.90491 0.92304 0.92347 0.92987 0.90812 0.92399 0.91296 0.96249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.74 9.26 37.16 0.34 -2.40 16 2 C 0.21 5.32 2.28 -68.87 -0.16 5.16 16 3 H 0.00 0.10 7.06 -51.93 -0.37 -0.26 16 4 C -0.51 -14.22 8.48 -34.45 -0.29 -14.51 16 5 H 0.06 1.62 7.69 -52.48 -0.40 1.21 16 6 C 0.06 1.77 5.16 -17.82 -0.09 1.67 16 7 N -0.89 -25.89 12.16 55.43 0.67 -25.21 16 8 Si 0.89 21.61 29.55 -169.99 -5.02 16.58 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 N -0.66 -13.97 5.77 -100.96 -0.58 -14.55 16 13 C 0.09 1.54 2.18 -67.72 -0.15 1.39 16 14 H 0.07 1.30 5.70 -51.93 -0.30 1.00 16 15 C -0.18 -2.91 9.15 37.16 0.34 -2.57 16 16 C 0.07 1.11 4.65 -3.83 -0.02 1.10 16 17 N -0.51 -7.92 4.38 -234.68 -1.03 -8.95 16 18 C 0.06 0.90 5.29 -3.83 -0.02 0.88 16 19 C -0.12 -1.60 6.09 -26.65 -0.16 -1.76 16 20 C -0.12 -1.40 6.00 -26.61 -0.16 -1.56 16 21 C -0.11 -1.39 6.09 -26.65 -0.16 -1.55 16 22 C 0.06 0.75 5.46 -3.83 -0.02 0.73 16 23 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.00 0.11 6.00 -51.93 -0.31 -0.20 16 25 H 0.06 1.54 6.82 -51.93 -0.35 1.18 16 26 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.33 6.98 8.00 -39.30 -0.31 6.66 16 28 H 0.05 0.79 8.13 -51.93 -0.42 0.37 16 29 H 0.06 1.15 7.43 -51.93 -0.39 0.77 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.99 7.99 -51.93 -0.41 0.58 16 32 H 0.02 0.28 8.12 -51.93 -0.42 -0.14 16 33 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 34 H 0.08 1.44 4.82 -51.93 -0.25 1.19 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.88 8.01 -51.93 -0.42 0.46 16 42 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 LS Contribution 318.79 15.07 4.80 4.80 Total: -1.00 -28.26 318.79 -9.42 -37.69 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -7.72 Total: 3.07 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -0.55 Total: -13.43 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: -0.94 Total: -48.71 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.26 -9.42 -37.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049501487.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.188 kcal (2) G-P(sol) polarization free energy of solvation -28.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds