Wall clock time and date at job start Mon Mar 30 2020 03:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46809 * 2 1 4 4 C 1.50690 * 109.47235 * 239.99726 * 2 1 3 5 5 H 1.08009 * 120.00230 * 245.45782 * 4 2 1 6 6 C 1.37873 * 120.00362 * 65.45761 * 4 2 1 7 7 N 1.31519 * 120.00132 * 9.55095 * 6 4 2 8 8 Si 1.86805 * 120.00360 * 189.55010 * 6 4 2 9 9 H 1.48499 * 109.46811 * 84.99704 * 8 6 4 10 10 H 1.48498 * 109.47141 * 204.99282 * 8 6 4 11 11 H 1.48496 * 109.47093 * 324.99732 * 8 6 4 12 12 N 1.46904 * 109.47122 * 119.99280 * 2 1 3 13 13 C 1.46898 * 111.00240 * 275.00323 * 12 2 1 14 14 H 1.09002 * 109.47197 * 35.00099 * 13 12 2 15 15 C 1.52995 * 109.47151 * 274.99925 * 13 12 2 16 16 C 1.52992 * 109.47297 * 154.99830 * 13 12 2 17 17 N 1.46899 * 109.47137 * 305.00273 * 16 13 12 18 18 C 1.46850 * 111.00041 * 294.20540 * 17 16 13 19 19 C 1.53035 * 109.52521 * 174.16142 * 18 17 16 20 20 C 1.53114 * 109.27835 * 59.18271 * 19 18 17 21 21 C 1.53123 * 109.16054 * 302.34498 * 20 19 18 22 22 C 1.46852 * 111.00205 * 169.99856 * 17 16 13 23 23 H 1.08999 * 109.46789 * 184.34676 * 1 2 3 24 24 H 1.08994 * 109.47425 * 304.34709 * 1 2 3 25 25 H 1.09003 * 109.47099 * 64.34923 * 1 2 3 26 26 H 0.96996 * 120.00472 * 179.97438 * 7 6 4 27 27 H 1.00893 * 110.99825 * 151.04846 * 12 2 1 28 28 H 1.09002 * 109.47212 * 300.00165 * 15 13 12 29 29 H 1.09006 * 109.47117 * 60.00124 * 15 13 12 30 30 H 1.08998 * 109.47299 * 179.97438 * 15 13 12 31 31 H 1.09002 * 109.47132 * 64.99515 * 16 13 12 32 32 H 1.09000 * 109.47422 * 184.99767 * 16 13 12 33 33 H 1.08998 * 109.46229 * 294.18006 * 18 17 16 34 34 H 1.08998 * 109.45714 * 54.14389 * 18 17 16 35 35 H 1.09003 * 109.50488 * 299.23818 * 19 18 17 36 36 H 1.08996 * 109.50360 * 179.12440 * 19 18 17 37 37 H 1.09003 * 109.52411 * 182.43975 * 20 19 18 38 38 H 1.08995 * 109.57730 * 62.28070 * 20 19 18 39 39 H 1.08999 * 109.50227 * 297.71250 * 21 20 19 40 40 H 1.08997 * 109.50399 * 177.60022 * 21 20 19 41 41 H 1.08996 * 109.46159 * 305.85371 * 22 17 16 42 42 H 1.08999 * 109.46139 * 65.82297 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2303 5 1 2.5787 -1.6371 -1.1337 6 6 1.7946 -0.1775 -2.4795 7 7 1.2991 1.0354 -2.5936 8 14 2.1763 -1.1783 -4.0100 9 1 1.0244 -2.0613 -4.3240 10 1 2.4228 -0.2616 -5.1520 11 1 3.3848 -2.0073 -3.7708 12 7 2.0197 -0.6924 1.1996 13 6 2.0824 0.2228 2.3469 14 1 1.2575 0.9331 2.2907 15 6 3.4110 0.9811 2.3224 16 6 1.9769 -0.5793 3.6454 17 7 0.7588 -1.3999 3.6166 18 6 -0.4437 -0.5570 3.6218 19 6 -1.6845 -1.4351 3.4448 20 6 -1.7487 -2.4553 4.5847 21 6 -0.4636 -3.2879 4.5871 22 6 0.7418 -2.3561 4.7310 23 1 -0.3633 -1.0247 0.0779 24 1 -0.3634 0.5798 0.8484 25 1 -0.3633 0.4449 -0.9264 26 1 1.1321 1.4104 -3.4724 27 1 2.9173 -1.1203 1.0289 28 1 4.2359 0.2708 2.3786 29 1 3.4861 1.5526 1.3972 30 1 3.4574 1.6605 3.1735 31 1 2.8485 -1.2264 3.7446 32 1 1.9341 0.1050 4.4928 33 1 -0.5089 -0.0231 4.5699 34 1 -0.3873 0.1612 2.8039 35 1 -1.6266 -1.9588 2.4905 36 1 -2.5778 -0.8109 3.4643 37 1 -2.6072 -3.1109 4.4390 38 1 -1.8464 -1.9336 5.5367 39 1 -0.3865 -3.8407 3.6509 40 1 -0.4847 -3.9874 5.4227 41 1 1.6592 -2.9445 4.7186 42 1 0.6711 -1.8138 5.6738 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049501487.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:39 Heat of formation + Delta-G solvation = -30.534033 kcal Electronic energy + Delta-G solvation = -18494.197219 eV Core-core repulsion = 15893.485000 eV Total energy + Delta-G solvation = -2600.712219 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.03597 -38.02081 -35.43048 -33.77874 -32.01533 -31.63517 -28.63378 -27.22403 -27.09996 -24.22099 -23.69061 -22.08595 -20.97408 -20.43854 -18.41117 -17.13736 -16.80774 -16.09624 -15.64624 -15.39243 -15.25444 -15.07730 -14.53049 -14.25737 -14.19044 -13.68746 -13.54026 -13.46105 -13.10373 -12.79914 -12.68259 -12.59358 -12.46606 -12.24454 -12.14700 -12.00705 -11.85482 -11.58870 -11.45880 -11.14630 -11.00245 -10.82370 -10.50584 -8.89891 -8.72199 -8.13390 -6.21270 1.41587 1.44044 1.52473 2.43838 3.10632 3.18387 3.73078 3.97342 4.01514 4.10771 4.19887 4.34280 4.41806 4.48527 4.58761 4.63366 4.71648 4.75796 4.80875 4.88898 4.93126 4.94658 5.02702 5.12676 5.14794 5.16137 5.19649 5.29865 5.32852 5.34385 5.42139 5.52503 5.58723 5.72982 5.92771 6.23382 6.39928 6.47811 6.60613 6.95309 7.16468 7.48510 8.95560 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027031 B = 0.006375 C = 0.005833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.597100 B = 4390.879884 C = 4799.200163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.221 3.779 3 H -0.031 1.031 4 C -0.532 4.532 5 H 0.056 0.944 6 C 0.015 3.985 7 N -0.921 5.921 8 Si 0.955 3.045 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.267 1.267 12 N -0.657 5.657 13 C 0.086 3.914 14 H 0.049 0.951 15 C -0.170 4.170 16 C 0.081 3.919 17 N -0.530 5.530 18 C 0.062 3.938 19 C -0.115 4.115 20 C -0.113 4.113 21 C -0.113 4.113 22 C 0.057 3.943 23 H 0.030 0.970 24 H 0.020 0.980 25 H 0.029 0.971 26 H 0.261 0.739 27 H 0.326 0.674 28 H 0.064 0.936 29 H 0.031 0.969 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.038 0.962 33 H 0.029 0.971 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.970 -4.625 15.671 16.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.112 3.888 3 H -0.014 1.014 4 C -0.571 4.571 5 H 0.074 0.926 6 C -0.184 4.184 7 N -0.560 5.560 8 Si 0.781 3.219 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.192 1.192 12 N -0.286 5.286 13 C -0.025 4.025 14 H 0.067 0.933 15 C -0.230 4.230 16 C -0.047 4.047 17 N -0.254 5.254 18 C -0.066 4.066 19 C -0.153 4.153 20 C -0.151 4.151 21 C -0.151 4.151 22 C -0.071 4.071 23 H 0.049 0.951 24 H 0.039 0.961 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.143 0.857 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.056 0.944 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.651 -5.019 15.277 16.297 hybrid contribution 0.880 0.990 -0.814 1.555 sum -1.771 -4.029 14.463 15.118 Atomic orbital electron populations 1.21380 0.98163 0.98199 0.97455 1.18809 0.92054 0.90827 0.87114 1.01357 1.21576 1.35528 1.07989 0.91970 0.92580 1.25685 0.95320 0.95463 1.01939 1.70095 1.46277 1.15395 1.24280 0.85624 0.78715 0.78632 0.78973 1.20227 1.21107 1.19193 1.60589 1.31598 1.32235 1.04227 1.21571 0.95783 0.92977 0.92153 0.93264 1.22370 0.98411 1.00951 1.01220 1.21979 0.92917 0.95182 0.94666 1.61660 1.01322 1.18224 1.44215 1.22009 0.90597 0.95019 0.98987 1.21531 0.96580 0.97937 0.99216 1.21532 0.97992 0.97576 0.97987 1.21553 0.93856 0.97581 1.02086 1.22109 0.99365 0.94498 0.91090 0.95053 0.96060 0.95169 0.93030 0.85685 0.91705 0.95020 0.90969 0.90592 0.94406 0.95310 0.92724 0.93208 0.91287 0.91154 0.91605 0.92724 0.89926 0.90849 0.94980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -4.73 9.26 71.98 0.67 -4.07 16 2 C 0.22 11.41 2.28 44.17 0.10 11.52 16 3 H -0.03 -1.81 7.06 -2.38 -0.02 -1.82 16 4 C -0.53 -29.89 8.48 25.60 0.22 -29.67 16 5 H 0.06 3.11 7.69 -2.91 -0.02 3.09 16 6 C 0.01 0.84 5.16 84.65 0.44 1.28 16 7 N -0.92 -54.68 12.16 21.45 0.26 -54.42 16 8 Si 0.95 44.58 29.55 68.60 2.03 46.60 16 9 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 10 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 12 N -0.66 -28.03 5.77 -473.33 -2.73 -30.76 16 13 C 0.09 3.04 2.18 44.91 0.10 3.14 16 14 H 0.05 1.92 5.70 -2.39 -0.01 1.91 16 15 C -0.17 -5.44 9.15 71.98 0.66 -4.78 16 16 C 0.08 2.33 4.65 86.30 0.40 2.74 16 17 N -0.53 -15.78 4.38 -896.38 -3.93 -19.71 16 18 C 0.06 1.82 5.29 86.32 0.46 2.28 16 19 C -0.11 -3.07 6.09 30.64 0.19 -2.88 16 20 C -0.11 -2.40 6.00 30.67 0.18 -2.22 16 21 C -0.11 -2.46 6.09 30.65 0.19 -2.27 16 22 C 0.06 1.35 5.46 86.32 0.47 1.82 16 23 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.02 0.96 6.00 -2.39 -0.01 0.95 16 25 H 0.03 1.65 6.82 -2.39 -0.02 1.64 16 26 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 27 H 0.33 13.94 8.00 -89.70 -0.72 13.23 16 28 H 0.06 1.89 8.13 -2.39 -0.02 1.87 16 29 H 0.03 1.19 7.43 -2.38 -0.02 1.17 16 30 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.08 2.06 7.99 -2.39 -0.02 2.04 16 32 H 0.04 0.97 8.12 -2.39 -0.02 0.95 16 33 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.05 1.90 4.82 -2.39 -0.01 1.89 16 35 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.07 1.67 8.01 -2.39 -0.02 1.65 16 42 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -61.16 318.79 -0.06 -61.21 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 0.25 Total: 20.19 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 4.06 Total: -23.12 kcal Atomic # 7 Polarization: -98.49 SS G_CDS: -6.40 Total: -104.89 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -61.16 -0.06 -61.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049501487.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.681 kcal (2) G-P(sol) polarization free energy of solvation -61.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds